ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48a11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195147.1| Oryza sativa (japonica cultivar-group) putative calcium-binding protein (OSJNBa0051J07.19), mRNA Length = 1254 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Plus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 75 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 134 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 135 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 194 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 195 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 254 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 255 ggcgcaggccgaccacatcta 275
>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence Length = 148301 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 127272 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 127213 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 127212 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 127153 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 127152 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 127093 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 127092 ggcgcaggccgaccacatcta 127072
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 4980351 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 4980292 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 4980291 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 4980232 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 4980231 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 4980172 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 4980171 ggcgcaggccgaccacatcta 4980151
>dbj|AK102990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116D13, full insert sequence Length = 1582 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Plus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 214 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 273 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 274 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 333 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 334 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 393 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 394 ggcgcaggccgaccacatcta 414
>dbj|AK064016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H07, full insert sequence Length = 1643 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Plus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 213 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 272 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 273 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 332 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 333 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 392 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 393 ggcgcaggccgaccacatcta 413
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 240 bits (121), Expect = 3e-60 Identities = 181/201 (90%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||| Sbjct: 4981138 ggtggtggacgggtcggagatcctgcagctggtggagaacaaggaggcgtttggtaagtt 4981079 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 ||||||| | |||||| ||| || ||||||||||||||||||||| ||||| ||| ||| Sbjct: 4981078 cgtggagcagaagttcaggctgctcgacgccgacggcgacgggaggctgtcggtgaggga 4981019 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 4981018 gctccagccggccgtcgctgacatcggcgccgccatcgggttgccggcgagggggtcgtc 4980959 Query: 410 ggcgcaggcggaccacatcta 430 ||||||||| ||||||||||| Sbjct: 4980958 ggcgcaggccgaccacatcta 4980938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 166/201 (82%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| || ||||||||||||||| ||| ||||||||||| || ||| Sbjct: 7888906 ggtggtggacgggtcggagatacgggagctggtggaggacagggaggcgttcgggatgtt 7888847 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 || ||||| |||||||||| | || ||||||||||||||||| ||| |||| || || Sbjct: 7888846 cgcggagagcaagttccgggagctcgacgccgacggcgacggcaggctgtccgtgcgtga 7888787 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||| ||||| || || | || |||||||||||| |||||||||||||| | ||||| || Sbjct: 7888786 gctgcagccggcggtggagggcatcggcgccgcgctcgggctgccggcgcgcgggtcttc 7888727 Query: 410 ggcgcaggcggaccacatcta 430 | | | || ||||||||||| Sbjct: 7888726 gcccaacgccgaccacatcta 7888706
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 166/201 (82%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| || ||||||||||||||| ||| ||||||||||| || ||| Sbjct: 7886741 ggtggtggacgggtcggagatacgggagctggtggaggacagggaggcgttcgggatgtt 7886682 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 || ||||| |||||||||| | || ||||||||||||||||| ||| |||| || || Sbjct: 7886681 cgcggagagcaagttccgggagctcgacgccgacggcgacggcaggctgtccgtgcgtga 7886622 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||| ||||| || || | || |||||||||||| |||||||||||||| | ||||| || Sbjct: 7886621 gctgcagccggcggtggagggcatcggcgccgcgctcgggctgccggcgcgcgggtcttc 7886562 Query: 410 ggcgcaggcggaccacatcta 430 | | | || ||||||||||| Sbjct: 7886561 gcccaacgccgaccacatcta 7886541
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 121 bits (61), Expect = 2e-24 Identities = 166/201 (82%) Strand = Plus / Minus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| || ||||||||||||||| ||| ||||||||||| || ||| Sbjct: 74504 ggtggtggacgggtcggagatacgggagctggtggaggacagggaggcgttcgggatgtt 74445 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 || ||||| |||||||||| | || ||||||||||||||||| ||| |||| || || Sbjct: 74444 cgcggagagcaagttccgggagctcgacgccgacggcgacggcaggctgtccgtgcgtga 74385 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcgagggggtcgtc 409 ||| ||||| || || | || |||||||||||| |||||||||||||| | ||||| || Sbjct: 74384 gctgcagccggcggtggagggcatcggcgccgcgctcgggctgccggcgcgcgggtcttc 74325 Query: 410 ggcgcaggcggaccacatcta 430 | | | || ||||||||||| Sbjct: 74324 gcccaacgccgaccacatcta 74304
>dbj|AK121051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055G22, full insert sequence Length = 3347 Score = 121 bits (61), Expect = 2e-24 Identities = 142/169 (84%) Strand = Plus / Plus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| || ||||||||||||||| ||| ||||||||||| || ||| Sbjct: 285 ggtggtggacgggtcggagatacgggagctggtggaggacagggaggcgttcgggatgtt 344 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgggaggttgtcgttgaagga 349 || ||||| |||||||||| | || ||||||||||||||||| ||| |||| || || Sbjct: 345 cgcggagagcaagttccgggagctcgacgccgacggcgacggcaggctgtccgtgcgtga 404 Query: 350 gctccagcccgccgtcgcggacatcggcgccgccatcgggctgccggcg 398 ||| ||||| || || | || |||||||||||| |||||||||||||| Sbjct: 405 gctgcagccggcggtggagggcatcggcgccgcgctcgggctgccggcg 453
>gb|BT018149.1| Zea mays clone EL01N0555F07.c mRNA sequence Length = 1650 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 230 ggtgctggacgggtcggacatccgggagctggtggagaacaaggaggcgttcgcgaagtt 289 |||| ||||||||||||| |||||||||||||||||| || ||||||||||| || | | Sbjct: 285 ggtggtggacgggtcggagatccgggagctggtggaggaccgggaggcgttcgggatgct 344 Query: 290 cgtggagaacaagttccggcaccttgacgccgacggcgacgg 331 |||||| | |||||||||||| || ||||||||||||||||| Sbjct: 345 cgtggacaccaagttccggcagctcgacgccgacggcgacgg 386
>ref|NM_205071.1| Gallus gallus insulin-like growth factor 2 mRNA binding protein 1 (IGF2BP1), mRNA Length = 2021 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 192 cagagcggccagcagcaagcgaggaggaa 220 ||||||||||||| ||||||||||||||| Sbjct: 1827 cagagcggccagctgcaagcgaggaggaa 1855
>gb|AF026527.1|AF026527 Gallus gallus zipcode-binding protein (ZBP1) mRNA, complete cds Length = 2021 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 192 cagagcggccagcagcaagcgaggaggaa 220 ||||||||||||| ||||||||||||||| Sbjct: 1827 cagagcggccagctgcaagcgaggaggaa 1855
>dbj|AK110087.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-G06, full insert sequence Length = 3507 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Plus Query: 248 catccgggagctggtggagaacaaggaggcgttcg 282 |||||| |||||||||||| ||||||||| ||||| Sbjct: 2988 catccgagagctggtggaggacaaggaggtgttcg 3022
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 gagctggtggagaacaaggagg 276 |||||||||||||||||||||| Sbjct: 72410 gagctggtggagaacaaggagg 72389
>gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O22 map 3p, complete sequence Length = 211012 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 91392 gccagcagcaagcggggaggaagaac 91417
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 gagctggtggagaacaaggagg 276 |||||||||||||||||||||| Sbjct: 4759264 gagctggtggagaacaaggagg 4759285
>gb|AC018505.4|AC018505 Homo sapiens chromosome 3 clone RP11-58I13 map 3p, complete sequence Length = 196044 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 144397 gccagcagcaagcggggaggaagaac 144422
>gb|AC018831.4|AC018831 Homo sapiens chromosome 3 clone RP11-481B18 map 3p, complete sequence Length = 178548 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 172778 gccagcagcaagcggggaggaagaac 172803
>gb|AC011599.8|AC011599 Homo sapiens 3 BAC RP11-606C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209876 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 65489 gccagcagcaagcggggaggaagaac 65464
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 gagctggtggagaacaaggagg 276 |||||||||||||||||||||| Sbjct: 4778048 gagctggtggagaacaaggagg 4778069
>gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p, complete sequence Length = 229408 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 225093 gccagcagcaagcggggaggaagaac 225118
>gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence Length = 184716 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 gccagcagcaagcgaggaggaagaac 224 |||||||||||||| ||||||||||| Sbjct: 27009 gccagcagcaagcggggaggaagaac 27034
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 371 catcggcgccgccatcg-ggctgccggcg 398 ||||||||||||||||| ||||||||||| Sbjct: 2588548 catcggcgccgccatcgcggctgccggcg 2588520
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 ccttgacgccgacggcgacgg 331 ||||||||||||||||||||| Sbjct: 3731777 ccttgacgccgacggcgacgg 3731797
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 364 tcgcggacatcggcgccgccatcgg 388 ||||||||||| ||||||||||||| Sbjct: 4273891 tcgcggacatccgcgccgccatcgg 4273915 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgtcgcggacatcggcgccgc 382 ||||||||||||||||||||| Sbjct: 1218822 cgtcgcggacatcggcgccgc 1218842
>gb|BT017716.1| Zea mays clone EL01N0446H11.c mRNA sequence Length = 791 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggagctcgacacgatgcaga 195 |||||||||||||||||||| Sbjct: 253 ggagctcgacacgatgcaga 272
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, complete sequence Length = 146677 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tccgccgccatcgccactcg 27 |||||||||||||||||||| Sbjct: 127291 tccgccgccatcgccactcg 127272
>ref|XM_868412.1| PREDICTED: Bos taurus similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein) (LOC616399), mRNA Length = 2049 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gagcggccagcagcaagcga 213 |||||||||||||||||||| Sbjct: 1398 gagcggccagcagcaagcga 1417
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 catcggcgccgccatcgggctgcc 394 ||||| |||||||||||||||||| Sbjct: 2472398 catcgacgccgccatcgggctgcc 2472421
>gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cluster, complete sequence Length = 45000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 acgatgcagagcggccagca 205 |||||||||||||||||||| Sbjct: 2779 acgatgcagagcggccagca 2760
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tcggcgccgccatcgggctg 392 |||||||||||||||||||| Sbjct: 2320985 tcggcgccgccatcgggctg 2320966
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gacatcggcgccgccatcgg 388 |||||||||||||||||||| Sbjct: 4288476 gacatcggcgccgccatcgg 4288457
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 392 gccggcgagggggtcgtcggcgcaggcg 419 |||||||||| |||||||||||| |||| Sbjct: 18645 gccggcgaggcggtcgtcggcgccggcg 18618
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ctccagcccgccgtcgcgga 370 |||||||||||||||||||| Sbjct: 1241405 ctccagcccgccgtcgcgga 1241386
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggagctcgacacgatgcaga 195 |||||||||||||||||||| Sbjct: 20376849 ggagctcgacacgatgcaga 20376830
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tccgccgccatcgccactcg 27 |||||||||||||||||||| Sbjct: 9355346 tccgccgccatcgccactcg 9355327
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgacggcgacgggaggttgt 339 |||||||||||||||||||| Sbjct: 19640571 cgacggcgacgggaggttgt 19640552
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggagctcgacacgatgcaga 195 |||||||||||||||||||| Sbjct: 4988 ggagctcgacacgatgcaga 4969
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cgacggcgacgggaggttgt 339 |||||||||||||||||||| Sbjct: 106857 cgacggcgacgggaggttgt 106838
>dbj|AK121125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075A07, full insert sequence Length = 3117 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggagctcgacacgatgcaga 195 |||||||||||||||||||| Sbjct: 308 ggagctcgacacgatgcaga 327
>gb|AY104581.1| Zea mays PCO117879 mRNA sequence Length = 652 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggagctcgacacgatgcaga 195 |||||||||||||||||||| Sbjct: 289 ggagctcgacacgatgcaga 308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,120,261 Number of Sequences: 3902068 Number of extensions: 3120261 Number of successful extensions: 69127 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67872 Number of HSP's gapped (non-prelim): 1255 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
