ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48a02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463670.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 270 bits (136), Expect = 2e-69 Identities = 205/228 (89%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||||||| |||||| | || Sbjct: 37 gaggcggagctccggcgcgggttcaagacgctcgccgtgacgcggcccgacccgtccgcg 96 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 |||||||||||||| ||||||| ||||||| ||| || |||||| |||||||||||| || Sbjct: 97 gcggtctacgaggtccgcctcaaccgccccacccggctcaacgccctcagcccggacgcc 156 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 157 ttcgcggagatcccgcgcgccatggcgctcctcgaccgcgcccccgccgcgcgcgccgtc 216 Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 217 gtgctctccgccgccggcccgcacttctgcgccggcatcgagctcggc 264
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 270 bits (136), Expect = 2e-69 Identities = 205/228 (89%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||||||| |||||| | || Sbjct: 40555981 gaggcggagctccggcgcgggttcaagacgctcgccgtgacgcggcccgacccgtccgcg 40556040 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 |||||||||||||| ||||||| ||||||| ||| || |||||| |||||||||||| || Sbjct: 40556041 gcggtctacgaggtccgcctcaaccgccccacccggctcaacgccctcagcccggacgcc 40556100 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 40556101 ttcgcggagatcccgcgcgccatggcgctcctcgaccgcgcccccgccgcgcgcgccgtc 40556160 Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 40556161 gtgctctccgccgccggcccgcacttctgcgccggcatcgagctcggc 40556208 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 253 gcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||||||||||||||||| |||| ||||||||||| Sbjct: 15431295 gcgcaccgtcgtgctctccgccgccggcctgcacttctgcgc 15431336 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 2957073 cgcgccgtcgtgctctccgccg 2957052 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 23852984 gatggccaccggcggcggcg 23853003
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 270 bits (136), Expect = 2e-69 Identities = 205/228 (89%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||||||| |||||| | || Sbjct: 117605 gaggcggagctccggcgcgggttcaagacgctcgccgtgacgcggcccgacccgtccgcg 117664 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 |||||||||||||| ||||||| ||||||| ||| || |||||| |||||||||||| || Sbjct: 117665 gcggtctacgaggtccgcctcaaccgccccacccggctcaacgccctcagcccggacgcc 117724 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 117725 ttcgcggagatcccgcgcgccatggcgctcctcgaccgcgcccccgccgcgcgcgccgtc 117784 Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 117785 gtgctctccgccgccggcccgcacttctgcgccggcatcgagctcggc 117832
>dbj|AK109471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E06, full insert sequence Length = 1365 Score = 270 bits (136), Expect = 2e-69 Identities = 205/228 (89%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||||||| |||||| | || Sbjct: 90 gaggcggagctccggcgcgggttcaagacgctcgccgtgacgcggcccgacccgtccgcg 149 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 |||||||||||||| ||||||| ||||||| ||| || |||||| |||||||||||| || Sbjct: 150 gcggtctacgaggtccgcctcaaccgccccacccggctcaacgccctcagcccggacgcc 209 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 210 ttcgcggagatcccgcgcgccatggcgctcctcgaccgcgcccccgccgcgcgcgccgtc 269 Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 270 gtgctctccgccgccggcccgcacttctgcgccggcatcgagctcggc 317
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 270 bits (136), Expect = 2e-69 Identities = 205/228 (89%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||||||| |||||| | || Sbjct: 35996 gaggcggagctccggcgcgggttcaagacgctcgccgtgacgcggcccgacccgtccgcg 36055 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 |||||||||||||| ||||||| ||||||| ||| || |||||| |||||||||||| || Sbjct: 36056 gcggtctacgaggtccgcctcaaccgccccacccggctcaacgccctcagcccggacgcc 36115 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 36116 ttcgcggagatcccgcgcgccatggcgctcctcgaccgcgcccccgccgcgcgcgccgtc 36175 Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 36176 gtgctctccgccgccggcccgcacttctgcgccggcatcgagctcggc 36223
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 161 bits (81), Expect = 2e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||| ||| |||||| | | Sbjct: 15885749 gaggcggagctccggcgtgggttcaagacgctcgccgtgacgccgcccgacccgtccacg 15885690 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 | ||| ||| |||| ||||||| |||| ||||||||| |||||| |||||||||||| || Sbjct: 15885689 gtggtttacaaggtccgcctcaaccgctccgcccagctcaacgccctcagcccggacgcc 15885630 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 |||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||| Sbjct: 15885629 ttcgcggagatcccacgcgccatggcgctcctcgaccgcatcctagccgcgcatgccgtc 15885570 Query: 263 gtgctctcc 271 ||||||||| Sbjct: 15885569 gtgctctcc 15885561
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 161 bits (81), Expect = 2e-36 Identities = 162/189 (85%) Strand = Plus / Minus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||| ||| |||||| | | Sbjct: 15838982 gaggcggagctccggcgtgggttcaagacgctcgccgtgacgccgcccgacccgtccacg 15838923 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 | ||| ||| |||| ||||||| |||| ||||||||| |||||| |||||||||||| || Sbjct: 15838922 gtggtttacaaggtccgcctcaaccgctccgcccagctcaacgccctcagcccggacgcc 15838863 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 |||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||| Sbjct: 15838862 ttcgcggagatcccacgcgccatggcgctcctcgaccgcatcctagccgcgcatgccgtc 15838803 Query: 263 gtgctctcc 271 ||||||||| Sbjct: 15838802 gtgctctcc 15838794
>emb|AL731754.3|CNS08C83 Oryza sativa chromosome 12, . BAC OJ1016_H08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113212 Score = 161 bits (81), Expect = 2e-36 Identities = 162/189 (85%) Strand = Plus / Plus Query: 83 gaggcggagctgcggcggggcttcaaggccctggccgtgacgcggccggacccggcggcc 142 ||||||||||| ||||| || |||||| | || |||||||||| ||| |||||| | | Sbjct: 51685 gaggcggagctccggcgtgggttcaagacgctcgccgtgacgccgcccgacccgtccacg 51744 Query: 143 gcggtctacgaggtgcgcctcagccgccccgcccagcgcaacgcgctcagcccggactcc 202 | ||| ||| |||| ||||||| |||| ||||||||| |||||| |||||||||||| || Sbjct: 51745 gtggtttacaaggtccgcctcaaccgctccgcccagctcaacgccctcagcccggacgcc 51804 Query: 203 ttcgcggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtc 262 |||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||| Sbjct: 51805 ttcgcggagatcccacgcgccatggcgctcctcgaccgcatcctagccgcgcatgccgtc 51864 Query: 263 gtgctctcc 271 ||||||||| Sbjct: 51865 gtgctctcc 51873
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 3e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 ||||||| |||||| ||||| |||||||||||||||||||| |||||| Sbjct: 6748934 gtgctctacgccgccggcccgcacttctgcgcgggcatcgaactcggc 6748981 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 15457963 cccgccgcgcgcgccgtcgt 15457944 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 15457611 cccgccgcgcgcgccgtcgt 15457592
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 63.9 bits (32), Expect = 3e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 263 gtgctctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 ||||||| |||||| ||||| |||||||||||||||||||| |||||| Sbjct: 78613 gtgctctacgccgccggcccgcacttctgcgcgggcatcgaactcggc 78660
>ref|XM_466837.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 60.0 bits (30), Expect = 4e-06 Identities = 49/54 (90%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 254 cgcgccgtcgtgctctccgccgcgggcccacacttctgcgcgggcatcgagctc 307 |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| Sbjct: 43 cgcgccgtcgtgctctccaccgccggccctcacttctgcgc-cgcatcgagctc 95
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 4e-06 Identities = 49/54 (90%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 254 cgcgccgtcgtgctctccgccgcgggcccacacttctgcgcgggcatcgagctc 307 |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| Sbjct: 24966557 cgcgccgtcgtgctctccaccgccggccctcacttctgcgc-cgcatcgagctc 24966505
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 60.0 bits (30), Expect = 4e-06 Identities = 49/54 (90%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 254 cgcgccgtcgtgctctccgccgcgggcccacacttctgcgcgggcatcgagctc 307 |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| Sbjct: 127840 cgcgccgtcgtgctctccaccgccggccctcacttctgcgc-cgcatcgagctc 127788
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 3e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 208 ggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtcgtgct 267 ||||||||| || ||||||||||| |||||||| |||| | || || | |||| |||| Sbjct: 19453154 ggagatcccacgtgccatggcgctcctcgaccgtctccctgtcgtgctcttcgtcatgct 19453213 Query: 268 ctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||| | || ||||||||||| | | |||||||||||||||| Sbjct: 19453214 ctccactgccggcccacacttttacttgggcatcgagctcggc 19453256 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 gcgccgtcgtgctctccgccg 275 ||||||||||||||||||||| Sbjct: 3384391 gcgccgtcgtgctctccgccg 3384371 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 2135786 gatggccaccggcggcggcg 2135767
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 54.0 bits (27), Expect = 3e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 208 ggagatcccgcgcgccatggcgctgctcgaccgcatccccgccgcgcgcgccgtcgtgct 267 ||||||||| || ||||||||||| |||||||| |||| | || || | |||| |||| Sbjct: 142692 ggagatcccacgtgccatggcgctcctcgaccgtctccctgtcgtgctcttcgtcatgct 142751 Query: 268 ctccgccgcgggcccacacttctgcgcgggcatcgagctcggc 310 |||| | || ||||||||||| | | |||||||||||||||| Sbjct: 142752 ctccactgccggcccacacttttacttgggcatcgagctcggc 142794
>tpg|BK000323.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) transposon Rim2-M44, complete sequence Length = 2086 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 253 gcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||||||||||||||||| |||| ||||||||||| Sbjct: 752 gcgcaccgtcgtgctctccgccgccggcctgcacttctgcgc 711
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 253 gcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||||||||||||||||| |||| ||||||||||| Sbjct: 108836 gcgcaccgtcgtgctctccgccgccggcctgcacttctgcgc 108877
>ref|XM_473261.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 46.1 bits (23), Expect = 0.068 Identities = 38/43 (88%) Strand = Plus / Plus Query: 252 cgcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||||| || ||||||||||| ||||| | ||||||||| Sbjct: 312 cgcgcgccgttgttctctccgccgccggcccgcccttctgcgc 354
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 46.1 bits (23), Expect = 0.068 Identities = 26/27 (96%) Strand = Plus / Minus Query: 68 ggcgcgtcggacgcggaggcggagctg 94 |||||||||||||||||||||| |||| Sbjct: 32559 ggcgcgtcggacgcggaggcggtgctg 32533
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.068 Identities = 38/43 (88%) Strand = Plus / Plus Query: 252 cgcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||||| || ||||||||||| ||||| | ||||||||| Sbjct: 26411119 cgcgcgccgttgttctctccgccgccggcccgcccttctgcgc 26411161
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 46.1 bits (23), Expect = 0.068 Identities = 38/43 (88%) Strand = Plus / Plus Query: 252 cgcgcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||||| || ||||||||||| ||||| | ||||||||| Sbjct: 51752 cgcgcgccgttgttctctccgccgccggcccgcccttctgcgc 51794
>ref|NM_184424.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1232 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 369 cgcgccgtcgtgctctccgccg 390
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039N21, complete sequence Length = 151732 Score = 44.1 bits (22), Expect = 0.27 Identities = 34/38 (89%) Strand = Plus / Minus Query: 257 gccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||| ||||||||||| ||||| | ||||||||| Sbjct: 55375 gccgtcgttctctccgccgccggcccgcccttctgcgc 55338
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.27 Identities = 34/38 (89%) Strand = Plus / Minus Query: 257 gccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||| ||||||||||| ||||| | ||||||||| Sbjct: 16912371 gccgtcgttctctccgccgccggcccgcccttctgcgc 16912334 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 cgccgtcgtgctctccgccgc 276 ||||||||||||||||||||| Sbjct: 4806666 cgccgtcgtgctctccgccgc 4806686 Score = 40.1 bits (20), Expect = 4.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 255 gcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||| ||||||||||| ||||| | ||||||||| Sbjct: 17501672 gcgcagtcgttctctccgccgccggcccgcccttctgcgc 17501711 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 6306254 gatggccaccggcggcggcg 6306235
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 agatggccaccggcggcggcgc 72 |||||||||||||||||||||| Sbjct: 14721809 agatggccaccggcggcggcgc 14721830 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gacgcggaggcggagctgcg 96 |||||||||||||||||||| Sbjct: 15494423 gacgcggaggcggagctgcg 15494404
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.27 Identities = 34/38 (89%) Strand = Plus / Minus Query: 257 gccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||||||| ||||||||||| ||||| | ||||||||| Sbjct: 16905944 gccgtcgttctctccgccgccggcccgcccttctgcgc 16905907 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 cgccgtcgtgctctccgccgc 276 ||||||||||||||||||||| Sbjct: 4806781 cgccgtcgtgctctccgccgc 4806801 Score = 40.1 bits (20), Expect = 4.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 255 gcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||| ||||||||||| ||||| | ||||||||| Sbjct: 17495213 gcgcagtcgttctctccgccgccggcccgcccttctgcgc 17495252 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 6305467 gatggccaccggcggcggcg 6305448
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 38590 cgcgccgtcgtgctctccgccg 38569
>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0030H07 Length = 168253 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 164071 cgcgccgtcgtgctctccgccg 164050
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 agatggccaccggcggcggcgc 72 |||||||||||||||||||||| Sbjct: 7198 agatggccaccggcggcggcgc 7219
>dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033053C20, full insert sequence Length = 1231 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 368 cgcgccgtcgtgctctccgccg 389
>dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A09, full insert sequence Length = 1274 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 cgcgccgtcgtgctctccgccg 275 |||||||||||||||||||||| Sbjct: 367 cgcgccgtcgtgctctccgccg 388
>ref|NM_194792.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029P06.10), mRNA Length = 1248 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 gaccgcatccccgccgcgcgc 256 ||||||||||||||||||||| Sbjct: 628 gaccgcatccccgccgcgcgc 648
>ref|NM_186423.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1365 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gcgccgtcgtgctctccgccg 275 ||||||||||||||||||||| Sbjct: 434 gcgccgtcgtgctctccgccg 454
>gb|BC069238.1| Homo sapiens zinc finger, CCHC domain containing 3, mRNA (cDNA clone MGC:78475 IMAGE:6287290), complete cds Length = 2773 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 25 atggccaccggcggcggcgcg 45
>gb|BC020460.2| Homo sapiens zinc finger, CCHC domain containing 3, mRNA (cDNA clone IMAGE:4456008) Length = 678 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 630 atggccaccggcggcggcgcg 650
>ref|XM_583674.2| PREDICTED: Bos taurus similar to zinc finger, CCHC domain containing 3 (LOC507116), mRNA Length = 2773 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 99 atggccaccggcggcggcgcg 119
>gb|BC036469.2| Homo sapiens chromosome 20 open reading frame 99, mRNA (cDNA clone IMAGE:5261152), with apparent retained intron Length = 2759 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 13 atggccaccggcggcggcgcg 33
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 gggcttcaaggccctggccgtgacg 124 |||||||| |||||||||||||||| Sbjct: 548101 gggcttcacggccctggccgtgacg 548125
>gb|AF130342.2| Homo sapiens chromosome 8, complete sequence Length = 349992 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 gcagagcagctcagatggcca 59 ||||||||||||||||||||| Sbjct: 182765 gcagagcagctcagatggcca 182785
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 caccggcggcggcgcgtcggacgcg 82 ||||||||||||| ||||||||||| Sbjct: 3333079 caccggcggcggcacgtcggacgcg 3333055
>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13 Contains the C20orf96 gene, the C20orf99 gene, a novel gene, the SOX12 gene for SRY (sex-determining region Y)-box 12, the C20orf98 gene for chromosome 20 open reading frame 98 (similar to mouse VMP, FLJ23329), the C20orf97 gene for a novel kinase domain-containing protein similar to phosphoprotein C8FW and rat NIPK, the gene for a novel defensin protein (DEFB32, UNQ827, KFLL827) and five CpG islands, complete sequence Length = 153170 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 52262 atggccaccggcggcggcgcg 52282
>gb|AE005964.1| Caulobacter crescentus CB15 section 290 of 359 of the complete genome Length = 10554 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 tggccaccggcggcggcgcgt 74 ||||||||||||||||||||| Sbjct: 2868 tggccaccggcggcggcgcgt 2888
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 cgccgtcgtgctctccgccgc 276 ||||||||||||||||||||| Sbjct: 28789 cgccgtcgtgctctccgccgc 28769
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 gaccgcatccccgccgcgcgc 256 ||||||||||||||||||||| Sbjct: 74192 gaccgcatccccgccgcgcgc 74212
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 223 catggcgctgctcgaccgcatccccgccgcgcg 255 |||||||||||| || ||||||| ||||||||| Sbjct: 1026065 catggcgctgcttgaacgcatccgcgccgcgcg 1026033
>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence Length = 164472 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cagagcagctcagatggccac 60 ||||||||||||||||||||| Sbjct: 48910 cagagcagctcagatggccac 48890
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 gaccgcatccccgccgcgcgc 256 ||||||||||||||||||||| Sbjct: 2417460 gaccgcatccccgccgcgcgc 2417480
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 ggcggcgcgtcggacgcggaggcgg 89 ||||||||| ||||||||||||||| Sbjct: 23078942 ggcggcgcggcggacgcggaggcgg 23078918 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 26846844 cccgccgcgcgcgccgtcgt 26846863 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 18742490 gatggccaccggcggcggcg 18742509
>ref|NM_033089.6| Homo sapiens zinc finger, CCHC domain containing 3 (ZCCHC3), mRNA Length = 2773 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 25 atggccaccggcggcggcgcg 45
>gb|AY204469.1| Myxococcus xanthus clone C1213 putative histidine kinase, sensor protein, MsrA-like protein, adventurous gliding motility protein R (aglR), adventurous gliding motility protein S (aglS), putative membrane protein, histidine kinase, hypothetical proteins, and NH3-dependent NAD+ synthetase genes, complete cds Length = 20250 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 catccccgccgcgcgcgccgt 261 ||||||||||||||||||||| Sbjct: 9257 catccccgccgcgcgcgccgt 9237
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 ggcggcgcgtcggacgcggaggcgg 89 ||||||||| ||||||||||||||| Sbjct: 2041 ggcggcgcggcggacgcggaggcgg 2017
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 gcgccgtcgtgctctccgccg 275 ||||||||||||||||||||| Sbjct: 24211 gcgccgtcgtgctctccgccg 24191
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 ggcggcgcgtcggacgcggaggcgg 89 ||||||||| ||||||||||||||| Sbjct: 138670 ggcggcgcggcggacgcggaggcgg 138646
>dbj|D88390.1| Oryza sativa transgene, left border of integrated DNA Length = 1327 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 253 gcgcgccgtcgtgctctccgccgcgggcc 281 |||| ||||||||||||||||||| |||| Sbjct: 823 gcgcaccgtcgtgctctccgccgccggcc 795
>dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F04, full insert sequence Length = 1366 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gcgccgtcgtgctctccgccg 275 ||||||||||||||||||||| Sbjct: 434 gcgccgtcgtgctctccgccg 454
>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete sequence Length = 153042 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cagagcagctcagatggccac 60 ||||||||||||||||||||| Sbjct: 106499 cagagcagctcagatggccac 106479
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 gaccgcatccccgccgcgcgc 256 ||||||||||||||||||||| Sbjct: 2417411 gaccgcatccccgccgcgcgc 2417431
>gb|BC107584.1| Homo sapiens zinc finger, CCHC domain containing 3, mRNA (cDNA clone MGC:104290 IMAGE:6457775), complete cds Length = 2285 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 atggccaccggcggcggcgcg 73 ||||||||||||||||||||| Sbjct: 19 atggccaccggcggcggcgcg 39
>dbj|D88392.1| Oryza sativa DNA GC-rich sequence Length = 2025 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 253 gcgcgccgtcgtgctctccgccgcgggcc 281 |||| ||||||||||||||||||| |||| Sbjct: 1521 gcgcaccgtcgtgctctccgccgccggcc 1493
>ref|NM_192684.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2505 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 390 gatggccaccggcggcggcg 409
>ref|XM_468748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 40.1 bits (20), Expect = 4.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 255 gcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||| ||||||||||| ||||| | ||||||||| Sbjct: 841 gcgcagtcgttctctccgccgccggcccgcccttctgcgc 802
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 4.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 255 gcgccgtcgtgctctccgccgcgggcccacacttctgcgc 294 |||| ||||| ||||||||||| ||||| | ||||||||| Sbjct: 62071 gcgcagtcgttctctccgccgccggcccgcccttctgcgc 62032
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22, complete sequence Length = 173903 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ccccgccgcgcgcgccgtcg 263 |||||||||||||||||||| Sbjct: 124331 ccccgccgcgcgcgccgtcg 124312
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gcggccgcggtctacgaggt 156 |||||||||||||||||||| Sbjct: 3136503 gcggccgcggtctacgaggt 3136484
>ref|XM_538505.2| PREDICTED: Canis familiaris similar to KIAA1841 protein (LOC481384), mRNA Length = 2310 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 cactacacggcagagcagctcaga 53 |||| ||||||||||||||||||| Sbjct: 2184 cactgcacggcagagcagctcaga 2207
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 256 cgccgtcgtgctctccgccgcgggcccacacttctg 291 |||| |||||||||| ||| | |||||||||||||| Sbjct: 58124 cgccatcgtgctctcggccaccggcccacacttctg 58089
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcggcgcgtcggacgc 81 |||||||||||||||||||| Sbjct: 218024 ggcggcggcgcgtcggacgc 218043
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 344358 gatggccaccggcggcggcg 344377
>tpg|BK000087.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) cellulose synthase-like C2 gene, complete cds Length = 2589 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 gacgcggaggcggagctgcg 96 |||||||||||||||||||| Sbjct: 146 gacgcggaggcggagctgcg 165
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 256 cgccgtcgtgctctccgccgcgggcccacacttctg 291 |||| |||||||||| ||| | |||||||||||||| Sbjct: 6002041 cgccatcgtgctctcggccaccggcccacacttctg 6002006
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ccccgccgcgcgcgccgtcg 263 |||||||||||||||||||| Sbjct: 2677811 ccccgccgcgcgcgccgtcg 2677792
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 119462 gatggccaccggcggcggcg 119443
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ccaccggcggcggcgcgtcg 76 |||||||||||||||||||| Sbjct: 3798163 ccaccggcggcggcgcgtcg 3798144 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 cgccgtcgtgctctccgccgcggg 279 ||||||||||||| |||||||||| Sbjct: 2128232 cgccgtcgtgctcgccgccgcggg 2128255
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 133569 gatggccaccggcggcggcg 133588
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 125478 cccgccgcgcgcgccgtcgt 125459 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 125126 cccgccgcgcgcgccgtcgt 125107
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gacgcggaggcggagctgcg 96 |||||||||||||||||||| Sbjct: 15278 gacgcggaggcggagctgcg 15259
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gacgcggaggcggagctgcg 96 |||||||||||||||||||| Sbjct: 143715 gacgcggaggcggagctgcg 143696
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 45939 gatggccaccggcggcggcg 45958
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cccgccgcgcgcgccgtcgt 264 |||||||||||||||||||| Sbjct: 109634 cccgccgcgcgcgccgtcgt 109653
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 3688 gatggccaccggcggcggcg 3669
>emb|Z21955.1|MXCRTNODA M.xanthus carotenoid gene cluster Length = 11979 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggcggagctgcggcggggc 103 |||||||||||||||||||| Sbjct: 1392 aggcggagctgcggcggggc 1411
>gb|AF347949.1| Poecile hudsonicus littoralis from USA cytochrome b (cytb) gene, partial cds; mitochondrial Length = 997 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gccacgcactacacggcaga 43 |||||||||||||||||||| Sbjct: 28 gccacgcactacacggcaga 47
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tggccaccggcggcggcgcg 73 |||||||||||||||||||| Sbjct: 346042 tggccaccggcggcggcgcg 346061
>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1417_E01 Length = 118058 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gatggccaccggcggcggcg 71 |||||||||||||||||||| Sbjct: 91579 gatggccaccggcggcggcg 91560
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gcggaggcggagctgcggcg 99 |||||||||||||||||||| Sbjct: 1139892 gcggaggcggagctgcggcg 1139911
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 256 cgccgtcgtgctctccgccgcgggcccacacttctg 291 |||| |||||||||| ||| | |||||||||||||| Sbjct: 6068518 cgccatcgtgctctcggccaccggcccacacttctg 6068483
>emb|CR956418.10| Pig DNA sequence from clone PigE-219P24 on chromosome 6, complete sequence Length = 173652 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gcagctcagatggccaccgg 63 |||||||||||||||||||| Sbjct: 116178 gcagctcagatggccaccgg 116197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,348,690 Number of Sequences: 3902068 Number of extensions: 2348690 Number of successful extensions: 59760 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56930 Number of HSP's gapped (non-prelim): 2837 length of query: 317 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 295 effective length of database: 17,147,199,772 effective search space: 5058423932740 effective search space used: 5058423932740 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
