ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7... 32 0.47
2HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein h... 32 0.47
3YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III 30 2.3
4PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC ... 29 3.0
5PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor c... 29 3.0
6LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 28 5.2
7MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A) ... 28 6.8
8NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i... 28 6.8
9ARLY2_RHILO (Q981V0) Argininosuccinate lyase 2 (EC 4.3.2.1) (Arg... 28 6.8
10PHNC1_PSEAE (Q9HYT0) Phosphonates import ATP-binding protein phn... 28 8.8

>CBK1_CANGA (Q6FP74) Serine/threonine-protein kinase CBK1 (EC 2.7.11.1)|
          Length = 773

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 149 TEKVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWR 33
           T K G P    DGS  R T+ VDS +  M+ R  +  WR
Sbjct: 537 TTKNGAPNDAGDGSNNRQTMIVDSINLTMSNRQQIQTWR 575



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>HTPG_NITWN (Q3SNS6) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 637

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 158 RTRTEKVGDPASGTDGSTPRFTISVDSSSRAMA 60
           R R E + DPA  TD + PR +I++D+  R +A
Sbjct: 52  RLRYEAISDPALLTDETRPRISITIDAERRQLA 84



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>YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III|
          Length = 964

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 176  SPGSRRRTRTEKVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWRARLVGGGD 9
            SPG++      +  +P  GT+  +   T S+   S ++   S V A +++   GGD
Sbjct: 840  SPGAKTSPNASRAPEPTGGTNSISQDTTQSLQMQSNSVNSSSMVDASKSKEKSGGD 895



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>PRMA_CHLTE (Q8KG70) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -3

Query: 119 TDGSTPRFTISVDSSSRAMAGRSWVAAWRARL 24
           T GS PRFT S       MA R+W A W A L
Sbjct: 67  TFGSVPRFTASF------MADRNWNAEWEAHL 92



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>PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor component 2|
           (Progesterone membrane-binding protein) (Steroid
           receptor protein DG6)
          Length = 223

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 143 KVGDPASGTDGSTPRFTISVDSSSRAMAGRSWVAAWRARLVGGGD 9
           K+G   SG++ S    + S   +  A  G  W AA  A L GGG+
Sbjct: 9   KLGTLGSGSESSNDGGSESPGDAGAAAEGGGWAAAALALLTGGGE 53



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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 173 PGSRRRTRTEKVGDPASGTDGSTPRFTISVDSSSRAM 63
           PG+ RRT   KVG  ++ T  +T   T+S DS+  A+
Sbjct: 34  PGNGRRTSVSKVGSTSTSTT-TTTTTTLSADSNGAAV 69



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>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)|
            (Proliferation-related protein p80) [Contains: MAP1 light
            chain LC2]
          Length = 2805

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +1

Query: 4    PSSPPPTSLARQAATQLRPAMAREELSTEIVNRGVEPSVPDAGSPTFSVRV-----RRRL 168
            PSS  P   A        P   R ELS   +N  + PS+ D    T  VR+     RRR+
Sbjct: 2423 PSSASPEVEAGPQGCXTEPRPHRGELSPSFLNPPLPPSIDDRDLSTEEVRLVGRGGRRRV 2482

Query: 169  PG 174
             G
Sbjct: 2483 GG 2484



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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2067

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 4    PSSPPPTSLARQAATQLRPAMAREELSTEIVNRGVEPSVPDAGS-PTFSVRVRRRLP 171
            PS  P TSL+   +++    +AR ELS   V+    PS+P   S P  S  +   LP
Sbjct: 1542 PSKEPSTSLSSPHSSEPCSTLARSELSE--VSSNAAPSIPPVMSRPVSSSSISTPLP 1596



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>ARLY2_RHILO (Q981V0) Argininosuccinate lyase 2 (EC 4.3.2.1) (Arginosuccinase 2)|
           (ASAL 2)
          Length = 927

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 1   GPSSPPPTSLARQAATQLRPAMAREELSTEIVNRGVEPSVPDAG 132
           G    PP   AR  A + R A    +L +   +R  +P+VP+AG
Sbjct: 334 GEGFTPPRGSARAGAIRFRLAPTSGKLKSLGFSRNPDPTVPEAG 377



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>PHNC1_PSEAE (Q9HYT0) Phosphonates import ATP-binding protein phnC 1 (EC|
           3.6.3.28)
          Length = 267

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   GPSSPPPTSLARQAATQLRPAMAREELSTE 90
           GPS    TSL R  A+Q RP+  R EL  E
Sbjct: 36  GPSGAGKTSLLRVLASQWRPSAGRVELLGE 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,487,064
Number of Sequences: 219361
Number of extensions: 234747
Number of successful extensions: 837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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