ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predic... 129 3e-27
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 3e-27
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 3e-27
4dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 3e-27
5dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 3e-27
6dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 3e-27
7dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 3e-27
8gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 129 3e-27
9ref|XM_396811.2| PREDICTED: Apis mellifera similar to Six2 prote... 44 0.14
10dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 0.56
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.56
12dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.56
13gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 0.56
14gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 2.2
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 2.2
16emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 2.2
17dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 2.2
18gb|AC084866.5| Homo sapiens BAC clone RP11-6E9 from 4, complete ... 40 2.2
19ref|XM_237381.2| PREDICTED: Rattus norvegicus centaurin, gamma 2... 40 2.2
20gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.2
21ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 ... 40 2.2
22emb|AJ336213.1|HSA336213 Homo sapiens genomic sequence surroundi... 40 2.2
23emb|AJ336209.1|HSA336209 Homo sapiens genomic sequence surroundi... 40 2.2
24gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 2.2
25gb|AC170805.2| Mus musculus BAC clone RP24-363B14 from chromosom... 38 8.7
26ref|XM_482650.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.7
27ref|XM_466526.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.7
28gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.7
29ref|XM_362410.1| Magnaporthe grisea 70-15 predicted protein (MG0... 38 8.7
30gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.7
31emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete ch... 38 8.7
32gb|AC091506.2| Sus scrofa clone RP44-348C20, complete sequence 38 8.7
33gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 8.7
34emb|X95703.1|SLMELOPER Streptomyces lincolnensis melC1, melC2, O... 38 8.7
35emb|X64131.1|RMFIX23 R.meliloti DNA for fix23 ORF1, ORF2, ORF3, ... 38 8.7
36emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 38 8.7
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
40gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 38 8.7
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 8.7
42dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
43dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 8.7
44dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 8.7
45dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
46dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
47dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
48dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
49emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 8.7
50gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 38 8.7
51gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosom... 38 8.7

>ref|XM_470547.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1788

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 84  gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 186 gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 245

                                        
Query: 144 ctcggtgcgcgtgcgccgccggctgccgg 172
           ||||||||| ||||| || ||||||||||
Sbjct: 246 ctcggtgcgggtgcggcggcggctgccgg 274



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                           
Query: 84      gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
               |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 4248730 gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 4248789

                                            
Query: 144     ctcggtgcgcgtgcgccgccggctgccgg 172
               ||||||||| ||||| || ||||||||||
Sbjct: 4248790 ctcggtgcgggtgcggcggcggctgccgg 4248818



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                           
Query: 84      gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
               |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 4248845 gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 4248904

                                            
Query: 144     ctcggtgcgcgtgcgccgccggctgccgg 172
               ||||||||| ||||| || ||||||||||
Sbjct: 4248905 ctcggtgcgggtgcggcggcggctgccgg 4248933



to top

>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full
           insert sequence
          Length = 1912

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 84  gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 81  gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 140

                                        
Query: 144 ctcggtgcgcgtgcgccgccggctgccgg 172
           ||||||||| ||||| || ||||||||||
Sbjct: 141 ctcggtgcgggtgcggcggcggctgccgg 169



to top

>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full
           insert sequence
          Length = 1903

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 84  gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 72  gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 131

                                        
Query: 144 ctcggtgcgcgtgcgccgccggctgccgg 172
           ||||||||| ||||| || ||||||||||
Sbjct: 132 ctcggtgcgggtgcggcggcggctgccgg 160



to top

>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full
           insert sequence
          Length = 1909

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 84  gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 81  gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 140

                                        
Query: 144 ctcggtgcgcgtgcgccgccggctgccgg 172
           ||||||||| ||||| || ||||||||||
Sbjct: 141 ctcggtgcgggtgcggcggcggctgccgg 169



to top

>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full
           insert sequence
          Length = 1907

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 84  gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 76  gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 135

                                        
Query: 144 ctcggtgcgcgtgcgccgccggctgccgg 172
           ||||||||| ||||| || ||||||||||
Sbjct: 136 ctcggtgcgggtgcggcggcggctgccgg 164



to top

>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score =  129 bits (65), Expect = 3e-27
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                         
Query: 84    gacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgccgacctt 143
             |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 77345 gacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgtt 77404

                                          
Query: 144   ctcggtgcgcgtgcgccgccggctgccgg 172
             ||||||||| ||||| || ||||||||||
Sbjct: 77405 ctcggtgcgggtgcggcggcggctgccgg 77433



to top

>ref|XM_396811.2| PREDICTED: Apis mellifera similar to Six2 protein (LOC413366), mRNA
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 41   ccgccacccagctgcgcccagc 62
            ||||||||||||||||||||||
Sbjct: 1144 ccgccacccagctgcgcccagc 1165



to top

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 30      cgcccgccaggccgccaccca 50
               |||||||||||||||||||||
Sbjct: 3708358 cgcccgccaggccgccaccca 3708378



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 34       cgccaggccgccacccagctgcgcc 58
                ||||||||||||||| |||||||||
Sbjct: 12861431 cgccaggccgccaccgagctgcgcc 12861455



to top

>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1230_H04
          Length = 123818

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 34    cgccaggccgccacccagctgcgcc 58
             ||||||||||||||| |||||||||
Sbjct: 33918 cgccaggccgccaccgagctgcgcc 33942



to top

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 30      cgcccgccaggccgccaccca 50
               |||||||||||||||||||||
Sbjct: 3699954 cgcccgccaggccgccaccca 3699974



to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 149     tgcgcgtgcgccgccggctgccgg 172
               |||||||| |||||||||||||||
Sbjct: 1317453 tgcgcgtgtgccgccggctgccgg 1317430



to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 149     tgcgcgtgcgccgccggctgccgg 172
               |||||||| |||||||||||||||
Sbjct: 2144137 tgcgcgtgtgccgccggctgccgg 2144160



to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 149     tgcgcgtgcgccgccggctgccgg 172
               |||||||| |||||||||||||||
Sbjct: 2230552 tgcgcgtgtgccgccggctgccgg 2230529



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 21      caccagtctcgcccgccaggccgccacc 48
               |||||||| | |||||||||||||||||
Sbjct: 2312996 caccagtcgctcccgccaggccgccacc 2312969



to top

>gb|AC084866.5| Homo sapiens BAC clone RP11-6E9 from 4, complete sequence
          Length = 196852

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    tgcgccgccggctgccggga 174
              ||||||||||||||||||||
Sbjct: 103226 tgcgccgccggctgccggga 103245



to top

>ref|XM_237381.2| PREDICTED: Rattus norvegicus centaurin, gamma 2 (predicted)
            (Centg2_predicted), mRNA
          Length = 6136

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  gcgccgccggctgccgggac 175
            ||||||||||||||||||||
Sbjct: 1778 gcgccgccggctgccgggac 1759



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 134     cgccgaccttctcggtgcgcgtgcgccgccgg 165
               ||||||||||| ||| ||||| ||||||||||
Sbjct: 3873533 cgccgaccttcgcggcgcgcgcgcgccgccgg 3873564



to top

>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156),
            partial mRNA
          Length = 7809

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  tgcgcgtgcgccgccggctg 168
            ||||||||||||||||||||
Sbjct: 3190 tgcgcgtgcgccgccggctg 3209



to top

>emb|AJ336213.1|HSA336213 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-HC10R
          Length = 497

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 tgcgccgccggctgccggga 174
           ||||||||||||||||||||
Sbjct: 90  tgcgccgccggctgccggga 109



to top

>emb|AJ336209.1|HSA336209 Homo sapiens genomic sequence surrounding NotI site, clone NL6-HC8R
          Length = 506

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 tgcgccgccggctgccggga 174
           ||||||||||||||||||||
Sbjct: 90  tgcgccgccggctgccggga 109



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     ccggacgccgggtcgccgac 140
               ||||||||||||||||||||
Sbjct: 3172587 ccggacgccgggtcgccgac 3172606



to top

>gb|AC170805.2| Mus musculus BAC clone RP24-363B14 from chromosome 16, complete
           sequence
          Length = 149317

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 10  tcaccaccgcccaccagtc 28
           |||||||||||||||||||
Sbjct: 602 tcaccaccgcccaccagtc 620



to top

>ref|XM_482650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 28  ctcgcccgccaggccgcca 46
           |||||||||||||||||||
Sbjct: 177 ctcgcccgccaggccgcca 159



to top

>ref|XM_466526.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 303

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 gtggagccgtcggtcccgg 124
           |||||||||||||||||||
Sbjct: 40  gtggagccgtcggtcccgg 22



to top

>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
              complete sequence
          Length = 131860

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 153    cgtgcgccgccggctgccg 171
              |||||||||||||||||||
Sbjct: 122507 cgtgcgccgccggctgccg 122525



to top

>ref|XM_362410.1| Magnaporthe grisea 70-15 predicted protein (MG07993.4) partial
          mRNA
          Length = 417

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 28 ctcgcccgccaggccgccacccagctg 54
          ||||||| || ||||||||||||||||
Sbjct: 25 ctcgccctcctggccgccacccagctg 51



to top

>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
             complete sequence
          Length = 163130

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 153   cgtgcgccgccggctgccg 171
             |||||||||||||||||||
Sbjct: 10279 cgtgcgccgccggctgccg 10297



to top

>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   cgccgggtcgccgaccttc 144
             |||||||||||||||||||
Sbjct: 80539 cgccgggtcgccgaccttc 80557



to top

>gb|AC091506.2| Sus scrofa clone RP44-348C20, complete sequence
          Length = 194809

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     cagctgcgcccagccatgg 67
              |||||||||||||||||||
Sbjct: 141552 cagctgcgcccagccatgg 141570



to top

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      gcgcccagccatggcgcgg 72
               |||||||||||||||||||
Sbjct: 3552701 gcgcccagccatggcgcgg 3552683



to top

>emb|X95703.1|SLMELOPER Streptomyces lincolnensis melC1, melC2, ORF3 and rnhH genes
          Length = 3149

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 132  gtcgccgaccttctcggtg 150
            |||||||||||||||||||
Sbjct: 1713 gtcgccgaccttctcggtg 1695



to top

>emb|X64131.1|RMFIX23 R.meliloti DNA for fix23 ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6
          Length = 12965

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 126  cgccgggtcgccgaccttc 144
            |||||||||||||||||||
Sbjct: 1062 cgccgggtcgccgaccttc 1044



to top

>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    cccggacgccgggtcgccg 138
              |||||||||||||||||||
Sbjct: 238789 cccggacgccgggtcgccg 238807



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 28       ctcgcccgccaggccgcca 46
                |||||||||||||||||||
Sbjct: 21639842 ctcgcccgccaggccgcca 21639824



 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 6        ctcatcaccaccgcccacc 24
                |||||||||||||||||||
Sbjct: 14478840 ctcatcaccaccgcccacc 14478858



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 153      cgtgcgccgccggctgccg 171
                |||||||||||||||||||
Sbjct: 22420872 cgtgcgccgccggctgccg 22420890



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 106      gtggagccgtcggtcccgg 124
                |||||||||||||||||||
Sbjct: 23130388 gtggagccgtcggtcccgg 23130370



to top

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 155     tgcgccgccggctgccggg 173
               |||||||||||||||||||
Sbjct: 1412007 tgcgccgccggctgccggg 1412025



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 30      cgcccgccaggccgccacc 48
               |||||||||||||||||||
Sbjct: 2854425 cgcccgccaggccgccacc 2854407



to top

>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   gtggagccgtcggtcccgg 124
             |||||||||||||||||||
Sbjct: 97426 gtggagccgtcggtcccgg 97408



to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 52      ctgcgcccagccatggcgc 70
               |||||||||||||||||||
Sbjct: 7050276 ctgcgcccagccatggcgc 7050294



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 42      cgccacccagctgcgcccagccatggc 68
               |||||||||||||||| | ||||||||
Sbjct: 3585935 cgccacccagctgcgcaccgccatggc 3585961



to top

>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0479C12
          Length = 136799

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   ctcgcccgccaggccgcca 46
            |||||||||||||||||||
Sbjct: 7412 ctcgcccgccaggccgcca 7394



to top

>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0708B04
          Length = 170523

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     ctcgcccgccaggccgcca 46
              |||||||||||||||||||
Sbjct: 100016 ctcgcccgccaggccgcca 99998



to top

>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049I01
          Length = 140261

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     ctcatcaccaccgcccacc 24
             |||||||||||||||||||
Sbjct: 73708 ctcatcaccaccgcccacc 73726



to top

>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0670E08
          Length = 133106

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      ctcatcaccaccgcccacc 24
              |||||||||||||||||||
Sbjct: 123123 ctcatcaccaccgcccacc 123141



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 30      cgcccgccaggccgccacc 48
               |||||||||||||||||||
Sbjct: 4130320 cgcccgccaggccgccacc 4130338



to top

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 151    cgcgtgcgccgccggctgc 169
              |||||||||||||||||||
Sbjct: 918128 cgcgtgcgccgccggctgc 918146



to top

>gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosome 16, complete
             sequence
          Length = 177627

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    tcaccaccgcccaccagtc 28
             |||||||||||||||||||
Sbjct: 53497 tcaccaccgcccaccagtc 53479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 960,730
Number of Sequences: 3902068
Number of extensions: 960730
Number of successful extensions: 88403
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84814
Number of HSP's gapped (non-prelim): 3589
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top