| Clone Name | bast47h12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ250864.1|HVU250864 Hordeum vulgare mRNA for allene oxide synthase (aos gene) Length = 1819 Score = 466 bits (235), Expect = e-128 Identities = 241/243 (99%) Strand = Plus / Plus Query: 1 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 421 Query: 61 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 120 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 cccggtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 481 Query: 121 cttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 cttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctc 541 Query: 181 ctcgctgctcgccaccgtcgagtcgcagctccttctcagcggcaagtccaacttcaacac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 ctcgctgctcgccaccgtcgagtcgcagctccttctcagcggcaagtccaacttcaacac 601 Query: 241 gct 243 ||| Sbjct: 602 gct 604
>gb|AY196004.1| Triticum aestivum allene oxide synthase (TaAOS) mRNA, complete cds Length = 1779 Score = 442 bits (223), Expect = e-121 Identities = 238/243 (97%) Strand = Plus / Plus Query: 1 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 366 Query: 61 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 426 Query: 121 cttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctc 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 427 cttctccctcctcgcctcgcgcaaggacgccgtcatcccggccttccgctcccacttctc 486 Query: 181 ctcgctgctcgccaccgtcgagtcgcagctccttctcagcggcaagtccaacttcaacac 240 |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 487 ctcgctcctcgccaccgtcgagtcgcagctcgttctcgccggcaagtccaacttcaacac 546 Query: 241 gct 243 ||| Sbjct: 547 gct 549
>emb|AJ251304.1|HVU251304 Hordeum vulgare mRNA for allene oxide synthase (aos2 gene) Length = 1722 Score = 426 bits (215), Expect = e-116 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 303 cgagaagaagaacctcttcaccggcacctacatgccctccacctcactcaccggaggctt 362 Query: 61 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ccgcgtctgcgcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 422 Query: 121 cttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctc 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 423 cttctccctcctcgcctcgcgcaaggacgccgtcatcccggccttccgctcccacttctc 482 Query: 181 ctcgctgctcgccaccgtcgagtcgcagctccttctcagcggcaagtccaacttcaacac 240 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 483 ctcgctcctcgccaccgtcgagtcgcagctagttctcagcggcaagtccaacttcaacac 542 Query: 241 gct 243 ||| Sbjct: 543 gct 545
>gb|BT009396.1| Triticum aestivum clone wlm96.pk039.g16:fis, full insert mRNA sequence Length = 1870 Score = 394 bits (199), Expect = e-107 Identities = 232/243 (95%) Strand = Plus / Plus Query: 1 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 373 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggaggctt 432 Query: 61 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgct 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 433 ccgcgtctgctcctacctcgacccctccgagcccatccacaccaaggtcaagcagctgct 492 Query: 121 cttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctc 180 |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 493 cttctccctccttgcctcccgcaaggacgccttcatcccggccttccgttcccacttctc 552 Query: 181 ctcgctgctcgccaccgtcgagtcgcagctccttctcagcggcaagtccaacttcaacac 240 |||||| ||||||||||| ||||||||| || | ||| |||||||||||||||||||||| Sbjct: 553 ctcgctcctcgccaccgtggagtcgcagatcgtgctcggcggcaagtccaacttcaacac 612 Query: 241 gct 243 ||| Sbjct: 613 gct 615
>gb|AY488135.1| Zea mays allene oxide synthase (aos) mRNA, complete cds Length = 1768 Score = 240 bits (121), Expect = 2e-60 Identities = 178/197 (90%) Strand = Plus / Plus Query: 2 gagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggcttc 61 ||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||| | Sbjct: 379 gagaagaaggacctgttcacgggcacctacatgccgtccacctccctcaccggcggctac 438 Query: 62 cgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgctc 121 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 439 cgcgtctgctcgtacctggacccctccgagcccacccacaccaaggtgaagcagctgctc 498 Query: 122 ttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctcc 181 ||||||||||| ||| |||||||||| | | ||||| ||||||||||| |||||||| Sbjct: 499 ttctccctcctgctctcccgcaaggacgacgtgatccccaccttccgctccaacttctcc 558 Query: 182 tcgctgctcgccaccgt 198 ||||| ||||||||||| Sbjct: 559 tcgctcctcgccaccgt 575
>gb|AY104188.1| Zea mays PCO060855 mRNA sequence Length = 1768 Score = 240 bits (121), Expect = 2e-60 Identities = 178/197 (90%) Strand = Plus / Plus Query: 2 gagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggcttc 61 ||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||| | Sbjct: 379 gagaagaaggacctgttcacgggcacctacatgccgtccacctccctcaccggcggctac 438 Query: 62 cgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagcagctgctc 121 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 439 cgcgtctgctcgtacctggacccctccgagcccacccacaccaaggtgaagcagctgctc 498 Query: 122 ttctccctcctcgcctcgcgcaaggacgccttcatcccggccttccgctcccacttctcc 181 ||||||||||| ||| |||||||||| | | ||||| ||||||||||| |||||||| Sbjct: 499 ttctccctcctgctctcccgcaaggacgacgtgatccccaccttccgctccaacttctcc 558 Query: 182 tcgctgctcgccaccgt 198 ||||| ||||||||||| Sbjct: 559 tcgctcctcgccaccgt 575
>ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 274 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 333 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 334 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 393 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 394 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 453 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 454 gtcgagtcgcagctc 468
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 6577393 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 6577452 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 6577453 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 6577512 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 6577513 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 6577572 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 6577573 gtcgagtcgcagctc 6577587 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 31462462 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 31462403 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 31462402 cctaccttgacccctccgagcccaaccac 31462374
>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene oxide synthase (AOS) gene, complete cds Length = 2465 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 669 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 728 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 729 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 788 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 789 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 848 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 849 gtcgagtcgcagctc 863
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 120155 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 120214 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 120215 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 120274 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 120275 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 120334 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 120335 gtcgagtcgcagctc 120349
>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA, complete cds Length = 1775 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 391 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 450 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 451 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 510 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 511 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 570 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 571 gtcgagtcgcagctc 585
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 6576606 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 6576665 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 6576666 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 6576725 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 6576726 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 6576785 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 6576786 gtcgagtcgcagctc 6576800 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 31552978 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 31552919 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 31552918 cctaccttgacccctccgagcccaaccac 31552890
>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full insert sequence Length = 1974 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 537 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 596 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 597 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 656 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 657 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 716 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 717 gtcgagtcgcagctc 731
>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full insert sequence Length = 1843 Score = 220 bits (111), Expect = 2e-54 Identities = 174/195 (89%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 414 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 473 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||| | | Sbjct: 474 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctctccctcctggtc 533 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 534 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 593 Query: 197 gtcgagtcgcagctc 211 ||||||||||||||| Sbjct: 594 gtcgagtcgcagctc 608
>gb|AY055775.1| Oryza sativa allene oxide synthase (AOS) mRNA, complete cds Length = 1809 Score = 204 bits (103), Expect = 9e-50 Identities = 172/195 (88%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctac 76 ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct: 400 ttcaccggcacgttcatgccgtccacctccctcaccggcggctaccgcgtctgcgcctac 459 Query: 77 ctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttctccctcctcgcc 136 |||||||| |||||||||| |||| ||||| |||||||||||||| | |||||||| | | Sbjct: 460 ctcgacccgtccgagcccaaccacgccaagatcaagcagctgctcctttccctcctggtc 519 Query: 137 tcgcgcaaggacgccttcatcccggccttccgctcccacttctcctcgctgctcgccacc 196 || ||||||||||||||| |||||| |||||||||| ||||| | |||| |||| |||| Sbjct: 520 tctcgcaaggacgccttcgtcccggtcttccgctccaacttcggcgcgctcctcgacacc 579 Query: 197 gtcgagtcgcagctc 211 ||| ||||||||||| Sbjct: 580 gtccagtcgcagctc 594
>ref|XM_469909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1682 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 386 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 445 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 446 cctaccttgacccctccgagcccaaccac 474
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 130134 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 130193 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 130194 cctaccttgacccctccgagcccaaccac 130222
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 33338 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 33397 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 33398 cctaccttgacccctccgagcccaaccac 33426
>dbj|AB116527.1| Oryza sativa (japonica cultivar-group) aos mRNA for allene oxide synthase, complete cds Length = 1918 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 509 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 568 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 569 cctaccttgacccctccgagcccaaccac 597
>dbj|AK068620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K19, full insert sequence Length = 1997 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 603 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 662 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 663 cctaccttgacccctccgagcccaaccac 691
>dbj|AK066137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054B10, full insert sequence Length = 3951 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 12 acctcttcaccggcacctacatgccctccacctccctcaccggcggcttccgcgtctgct 71 |||||||||||||||||| |||||| |||||| |||||||||||| | ||||||| || Sbjct: 2869 acctcttcaccggcaccttcatgccgtccaccgacctcaccggcgggtaccgcgtcctct 2810 Query: 72 cctacctcgacccctccgagcccacccac 100 ||||||| |||||||||||||||| |||| Sbjct: 2809 cctaccttgacccctccgagcccaaccac 2781
>gb|U00428.1|U00428 Linum usitatissimum allene oxide synthase mRNA complete cds Length = 2038 Score = 75.8 bits (38), Expect = 6e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 1 cgagaagaagaacctcttcaccggcacctacatgccctccacctccctcaccggcggctt 60 |||||||||| | |||||||| || || ||||||||||| || ||||||||||| | Sbjct: 695 cgagaagaaggatctcttcactggaacttacatgccctctactgagctcaccggcggtta 754 Query: 61 ccgcgtctgctcctacctcgacccctccgagcccacccacaccaaggtcaagca 114 ||| || |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 755 ccgtatcctctcctacctcgacccctccgagcccaatcacaccaagctcaagca 808
>emb|AJ578748.1|PDU578748 Prunus dulcis cyp74C5 gene for cytochrome P450 Length = 2316 Score = 61.9 bits (31), Expect = 9e-07 Identities = 67/79 (84%) Strand = Plus / Plus Query: 22 cggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctacctcga 81 |||||| ||||||||||||||| || ||||||||||| |||||||||| | || || || Sbjct: 956 cggcacttacatgccctccaccgcctacaccggcggctaccgcgtctgcgcttatcttga 1015 Query: 82 cccctccgagcccacccac 100 ||| || ||||||| |||| Sbjct: 1016 cccttcggagcccaaccac 1034
>gb|DQ340253.1| Glycine max cytochrome P450 monooxygenase CYP74A (CYP74A) mRNA, complete cds Length = 1756 Score = 61.9 bits (31), Expect = 9e-07 Identities = 67/79 (84%) Strand = Plus / Plus Query: 22 cggcacctacatgccctccacctccctcaccggcggcttccgcgtctgctcctacctcga 81 |||||||| |||||| |||||| |||||||||| |||||||||||| |||||||||| Sbjct: 359 cggcaccttcatgccttccaccaagttcaccggcgggttccgcgtctgcgcctacctcga 418 Query: 82 cccctccgagcccacccac 100 | || |||| |||| |||| Sbjct: 419 caccaccgaacccaaccac 437
>gb|AY243478.1| Citrus sinensis allene oxide synthase (AOS) mRNA, complete cds Length = 2251 Score = 52.0 bits (26), Expect = 8e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 17 ttcaccggcacctacatgccctccac 42 |||||||||||||||||||||||||| Sbjct: 665 ttcaccggcacctacatgccctccac 690
>emb|AJ867809.1| Allium sativum mRNA for unspecific 9/13 divinyl ether synthase (des1 gene) Length = 1655 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Plus Query: 72 cctacctcgacccctccgagcccacccacaccaaggtcaagcagctgctcttc 124 |||||||||| || ||||||||||||||||| || |||||||| || ||||| Sbjct: 361 cctacctcgatccgtccgagcccacccacactaaaatcaagcaggtgttcttc 413
>dbj|AP004629.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT07I01b, TM0091b, complete sequence Length = 59720 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 22 cggcacctacatgccctccacctccctcaccggcggcttccgcgtctgc 70 |||||||| ||||||||||||| | |||||||||||| ||||| |||| Sbjct: 59396 cggcaccttcatgccctccaccggcttcaccggcggctaccgcgcctgc 59348
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 accggcggcttccgcgtctgc 70 ||||||||||||||||||||| Sbjct: 81112 accggcggcttccgcgtctgc 81092
>emb|AJ633680.1| Prunus persica partial mRNA for allene oxide synthase (aos gene) Length = 1035 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 acctcttcaccggcacctacatgcc 36 |||||||||||||||| |||||||| Sbjct: 56 acctcttcaccggcacttacatgcc 80
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 accggcggcttccgcgtctgc 70 ||||||||||||||||||||| Sbjct: 16582373 accggcggcttccgcgtctgc 16582353
>ref|NM_013607.1| Mus musculus myosin, heavy polypeptide 11, smooth muscle (Myh11), mRNA Length = 6214 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 5731 acaccaaggtcaagcagctg 5750
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ccctccacctccctcaccggcggc 58 |||||| ||||||||||||||||| Sbjct: 41466 ccctccgcctccctcaccggcggc 41443
>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20, complete sequence Length = 151042 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ccctccacctccctcaccggcggc 58 |||||| ||||||||||||||||| Sbjct: 141291 ccctccgcctccctcaccggcggc 141268
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccctcaccggcggcttccgc 64 |||||||||||||||||||| Sbjct: 1745369 ccctcaccggcggcttccgc 1745350
>gb|DQ132850.1| Pseudonocardia sp. AB598 putative NRPS gene, partial cds Length = 625 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 239 cgctgctcgccaccgtcgag 258
>gb|AC164291.2| Mus musculus BAC clone RP24-85F23 from chromosome 16, complete sequence Length = 237479 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 79846 acaccaaggtcaagcagctg 79827
>gb|DQ104530.1| Pseudonocardia sp. AB633 NRPS gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 233 cgctgctcgccaccgtcgag 252
>gb|DQ104529.1| Pseudonocardia sp. AB632 NRPS gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 233 cgctgctcgccaccgtcgag 252
>gb|DQ104528.1| Pseudonocardia sp. AB630 NRPS gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 233 cgctgctcgccaccgtcgag 252
>gb|DQ104527.1| Pseudonocardia sp. AB597 NRPS gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 233 cgctgctcgccaccgtcgag 252
>gb|DQ104526.1| Pseudonocardia sp. AB596 NRPS gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgctgctcgccaccgtcgag 202 |||||||||||||||||||| Sbjct: 233 cgctgctcgccaccgtcgag 252
>dbj|AK008768.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210022E23 product:myosin heavy chain 11, smooth muscle, full insert sequence Length = 940 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 132 acaccaaggtcaagcagctg 151
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ccctccacctccctcaccggcggc 58 |||||| ||||||||||||||||| Sbjct: 16400856 ccctccgcctccctcaccggcggc 16400833
>gb|AC112255.4| Homo sapiens BAC clone RP11-1193F23 from 2, complete sequence Length = 136713 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acatgccctccacctccctc 49 |||||||||||||||||||| Sbjct: 36306 acatgccctccacctccctc 36325
>gb|AC117517.7| Homo sapiens X BAC RP13-356M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121628 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctcttctccctcctcgc 135 |||||||||||||||||||| Sbjct: 97739 ctgctcttctccctcctcgc 97720
>gb|AF249879.1|AF249879 Oryctolagus cuniculus liver bile salt export pump (Bsep/spgp) mRNA, complete cds Length = 4687 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ccaaggtcaagcagctgctc 121 |||||||||||||||||||| Sbjct: 4235 ccaaggtcaagcagctgctc 4254
>dbj|AK173045.1| Mus musculus mRNA for mKIAA0866 protein Length = 6554 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 5740 acaccaaggtcaagcagctg 5759
>gb|BC026142.1| Mus musculus myosin, heavy polypeptide 11, smooth muscle, mRNA (cDNA clone MGC:13920 IMAGE:3989495), complete cds Length = 6584 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 5761 acaccaaggtcaagcagctg 5780
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ccctccacctccctcaccggcggc 58 |||||| ||||||||||||||||| Sbjct: 16491871 ccctccgcctccctcaccggcggc 16491848
>dbj|D85924.1| Mus musculus mRNA for myosin, complete cds Length = 6214 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 5731 acaccaaggtcaagcagctg 5750
>dbj|D85923.1| Mus musculus mRNA for myosin, complete cds Length = 6175 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acaccaaggtcaagcagctg 118 |||||||||||||||||||| Sbjct: 5731 acaccaaggtcaagcagctg 5750 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,272,745 Number of Sequences: 3902068 Number of extensions: 2272745 Number of successful extensions: 47505 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47213 Number of HSP's gapped (non-prelim): 291 length of query: 243 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 221 effective length of database: 17,147,199,772 effective search space: 3789531149612 effective search space used: 3789531149612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)