ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast47h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 93 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 152 Query: 132 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 191 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 153 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 212 Query: 192 gccggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggc 251 ||||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||| Sbjct: 213 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 272 Query: 252 cggcgcgcaggcgctcgt 269 ||| ||||||||||||| Sbjct: 273 cgggacgcaggcgctcgt 290
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 26079482 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 26079541 Query: 132 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 191 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 26079542 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 26079601 Query: 192 gccggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggc 251 ||||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||| Sbjct: 26079602 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 26079661 Query: 252 cggcgcgcaggcgctcgt 269 ||| ||||||||||||| Sbjct: 26079662 cgggacgcaggcgctcgt 26079679 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 176 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 235 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 26067143 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 26067084 Query: 236 cgggcgagggcatggccggcgcgcaggcgctcgt 269 | |||| || ||||||||| ||||||||||||| Sbjct: 26067083 ccggcggcgggatggccggcacgcaggcgctcgt 26067050
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 163 bits (82), Expect = 4e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| | ||||||| |||||||||||| ||| || || || Sbjct: 23413 cgagaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgc 23472 Query: 132 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 191 |||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| || Sbjct: 23473 ggcgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggc 23532 Query: 192 gccggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggc 251 ||||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||| Sbjct: 23533 gccggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggc 23592 Query: 252 cggcgcgcaggcgctcgt 269 ||| ||||||||||||| Sbjct: 23593 cgggacgcaggcgctcgt 23610 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 176 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 235 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 11074 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 11015 Query: 236 cgggcgagggcatggccggcgcgcaggcgctcgt 269 | |||| || ||||||||| ||||||||||||| Sbjct: 11014 ccggcggcgggatggccggcacgcaggcgctcgt 10981
>gb|AY108865.1| Zea mays PCO075691 mRNA sequence Length = 425 Score = 149 bits (75), Expect = 5e-33 Identities = 165/195 (84%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 ||||||||||||||||||| ||||||| |||||||||||| ||| ||||||| || Sbjct: 160 cgagaagttcccggcggggcgtgcgtacgcgtcgtgcgaggacctgccgaagctgggcgc 219 Query: 132 cgcgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgc 191 ||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| || Sbjct: 220 gtcgctgcactggacgtacgacgcgtccaagagctccctgtcggtggcgttcgtggcggc 279 Query: 192 gccggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggc 251 ||| |||| ||| |||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 280 gcccgcggcggcgggcgggtgggtggcgtggggcctgaaccctacgggcgagggcatggc 339 Query: 252 cggcgcgcaggcgct 266 ||||||||||||||| Sbjct: 340 cggcgcgcaggcgct 354
>ref|XM_483411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 176 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 235 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 236 cgggcgagggcatggccggcgcgcaggcgctcgt 269 | |||| || ||||||||| ||||||||||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgt 349
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 176 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 235 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 102704 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 102645 Query: 236 cgggcgagggcatggccggcgcgcaggcgctcgt 269 | |||| || ||||||||| ||||||||||||| Sbjct: 102644 ccggcggcgggatggccggcacgcaggcgctcgt 102611
>dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence Length = 1418 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 176 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 235 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 236 cgggcgagggcatggccggcgcgcaggcgctcgt 269 | |||| || ||||||||| ||||||||||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgt 349
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 207 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 266 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 150199 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 150258 Query: 267 cgt 269 ||| Sbjct: 150259 cgt 150261 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 150058 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 150117 Query: 132 cgcgctgcactggacctacgacg 154 ||||||||||||||||||||| Sbjct: 150118 gacgctgcactggacctacgacg 150140 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 208 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 267 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 140717 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 140658 Query: 268 gt 269 || Sbjct: 140657 gt 140656
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 207 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 266 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 34873 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 34932 Query: 267 cgt 269 ||| Sbjct: 34933 cgt 34935 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 34732 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 34791 Query: 132 cgcgctgcactggacctacgacg 154 ||||||||||||||||||||| Sbjct: 34792 gacgctgcactggacctacgacg 34814 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 208 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 267 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 25391 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 25332 Query: 268 gt 269 || Sbjct: 25331 gt 25330
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 207 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 266 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 19104914 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 19104973 Query: 267 cgt 269 ||| Sbjct: 19104974 cgt 19104976 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 72 cgagaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggc 131 |||||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 19104773 cgagaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgc 19104832 Query: 132 cgcgctgcactggacctacgacg 154 ||||||||||||||||||||| Sbjct: 19104833 gacgctgcactggacctacgacg 19104855 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 208 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 267 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 19095431 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 19095372 Query: 268 gt 269 || Sbjct: 19095371 gt 19095370
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 agggcatggccggcgcgcaggcgct 266 |||||||| |||||||||||||||| Sbjct: 38410 agggcatgaccggcgcgcaggcgct 38434
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.88 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 234 cacgggcgagggcatggccggcgcgcaggcgct 266 |||| ||||||||| |||||||||||||||||| Sbjct: 1513576 cacgtgcgagggca-ggccggcgcgcaggcgct 1513607
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ggcatggccggcgcgcaggc 263 |||||||||||||||||||| Sbjct: 3952532 ggcatggccggcgcgcaggc 3952551
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gccggcgcgcaggcgctcgt 269 |||||||||||||||||||| Sbjct: 41472 gccggcgcgcaggcgctcgt 41491
>emb|AL929444.6| Human DNA sequence from clone RP11-359B3 on chromosome 10 Contains a ribosomal protein S27 (metallopanstimulin 1) (MPS1, MPS-1) (RPS27) pseudogene, complete sequence Length = 50865 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 gggggccaacgggtgggtggcctg 221 |||||||||| ||||||||||||| Sbjct: 12070 gggggccaacaggtgggtggcctg 12047
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gctggcgttcgtggccgcgc 193 |||||||||||||||||||| Sbjct: 95987 gctggcgttcgtggccgcgc 96006
>gb|AE011626.1| Xanthomonas axonopodis pv. citri str. 306, section 4 of 469 of the complete genome Length = 11366 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gccggcgcgcaggcgctcgt 269 |||||||||||||||||||| Sbjct: 7816 gccggcgcgcaggcgctcgt 7835
>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence Length = 182913 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 gggggccaacgggtgggtggcctg 221 |||||||||| ||||||||||||| Sbjct: 135290 gggggccaacaggtgggtggcctg 135313
>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence Length = 182912 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 gggggccaacgggtgggtggcctg 221 |||||||||| ||||||||||||| Sbjct: 47618 gggggccaacaggtgggtggcctg 47595
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 gcatggccggcgcgcaggcgctcg 268 ||||||||||||| |||||||||| Sbjct: 3557991 gcatggccggcgcccaggcgctcg 3557968
>dbj|AB032799.1| Chromobacterium violaceum violacein biosynthetic gene cluster (vio A, vio B, vio C, vio D), complete cds Length = 9077 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 gcatggccggcgcgcaggcgctcg 268 ||||||||||||| |||||||||| Sbjct: 8849 gcatggccggcgcccaggcgctcg 8872 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,016,862 Number of Sequences: 3902068 Number of extensions: 1016862 Number of successful extensions: 24459 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 24106 Number of HSP's gapped (non-prelim): 347 length of query: 269 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 247 effective length of database: 17,147,199,772 effective search space: 4235358343684 effective search space used: 4235358343684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
