Clone Information

BLAST Search Result

Clone Name	bast47h07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4)	33	0.14
2	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	32	0.52
3	RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein	32	0.52
4	IF2_SYNEL (Q8DK04) Translation initiation factor IF-2	31	0.68
5	KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)	31	0.68
6	FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear...	31	0.88
7	MSH6_SCHPO (O74502) DNA mismatch repair protein msh6	30	1.2
8	RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...	30	1.2
9	TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki...	30	1.2
10	BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-assoc...	30	1.5
11	ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Aden...	30	1.5
12	ASH2L_MOUSE (Q91X20) Set1/Ash2 histone methyltransferase complex...	30	1.5
13	VE2_HPV08 (P06422) Regulatory protein E2	29	2.6
14	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	29	2.6
15	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	29	2.6
16	ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4	29	3.4
17	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	29	3.4
18	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	29	3.4
19	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	29	3.4
20	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	29	3.4
21	DCP2_ASHGO (Q75BK1) mRNA decapping enzyme 2 (EC 3.-.-.-)	29	3.4
22	PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)	28	4.4
23	RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...	28	4.4
24	ATU_DROME (Q94546) Another transcription unit protein	28	4.4
25	SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)	28	4.4
26	DTX1_XENLA (Q8AW93) Protein deltex-1 (xDtx1)	28	4.4
27	ATPBM_ARATH (P83483) ATP synthase beta chain 1, mitochondrial pr...	28	4.4
28	MEI9_DROME (Q24087) Protein mei-9 (Protein meiotic 9)	28	4.4
29	CADHK_CHICK (P33145) B-cadherin precursor (K-CAM protein) (Fragm...	28	5.7
30	VE2_HPV37 (Q80903) Regulatory protein E2	28	5.7
31	PYRB1_PEA (Q43086) Aspartate carbamoyltransferase 1, chloroplast...	28	5.7
32	RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...	28	5.7
33	TESK1_RAT (Q63572) Dual specificity testis-specific protein kina...	28	5.7
34	ODO2_PIG (Q9N0F1) Dihydrolipoyllysine-residue succinyltransferas...	28	5.7
35	GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)	28	5.7
36	VE2_HPV05 (P06921) Regulatory protein E2	28	5.7
37	BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa...	28	5.7
38	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	28	5.7
39	ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferas...	28	7.5
40	SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SAL...	28	7.5
41	SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4	28	7.5
42	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	28	7.5
43	ATPBN_ARATH (P83484) ATP synthase beta chain 2, mitochondrial pr...	28	7.5
44	SCNNA_CAVPO (Q9R1N2) Amiloride-sensitive sodium channel alpha-su...	28	7.5
45	PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B me...	28	7.5
46	KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription fact...	27	9.8
47	FILA_HUMAN (P20930) Filaggrin	27	9.8
48	GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outg...	27	9.8
49	PYRB3_PEA (Q43064) Aspartate carbamoyltransferase 3, chloroplast...	27	9.8
50	IE18_PRVIF (P11675) Immediate-early protein IE180	27	9.8
51	COX10_EMENI (Q5BCK8) Protoheme IX farnesyltransferase, mitochond...	27	9.8
52	PYRB2_PEA (Q43087) Aspartate carbamoyltransferase 2, chloroplast...	27	9.8
53	LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related prot...	27	9.8
54	HTF4_CHICK (P30985) Transcription factor 12 (Transcription facto...	27	9.8
55	SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting...	27	9.8
56	KCNE3_RAT (Q9JJV7) Potassium voltage-gated channel subfamily E m...	27	9.8
57	YKS3_YEAST (P34234) Protein YKL183W	27	9.8
58	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	27	9.8
59	RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin...	27	9.8
60	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	27	9.8
61	FLID_VIBCH (Q9KQ63) Flagellar hook-associated protein 2 (HAP2) (...	27	9.8
62	HM43_CAEEL (Q18273) Homeobox protein ceh-43	27	9.8
63	LDLR_RABIT (P20063) Low-density lipoprotein receptor (LDL recept...	27	9.8

>SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4)|
          Length = 1053

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 206 GKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGF-GAGTPEPSPQS 66
           G  P    PGPSP               N P A GF G+GTPEP  ++
Sbjct: 501 GSLPGDLQPGPSPESEGGPTLPGVGPNYNSPRAGGFQGSGTPEPGSET 548

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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 182  PGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            P  SPG   ++           PT+ G+   +P  SP S ++S S     PTS AY
Sbjct: 1539 PSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1594



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 182  PGPSPGRHAATXXXXXXXXSNP---PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PG SP   A +        ++P   PT+  +   +P  SP S S+S +  S  PTS AY
Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1643



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 236  TSSESTVSCSGKAPEGAIPGPS-PGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 60
            TS   + +  G +P      PS PG    +        S  PT+  +   +P  SP S S
Sbjct: 1562 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1621

Query: 59   FSRSYGSVLPTSLAY 15
            +S +  S  PTS +Y
Sbjct: 1622 YSPTSPSYSPTSPSY 1636



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 236  TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 60
            TS   + S  G +P      P SP     +        S  PT+  +   +P  SP S S
Sbjct: 1576 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1635

Query: 59   FSRSYGSVLPTSLAY 15
            +S +  +  PTS AY
Sbjct: 1636 YSPTSPAYSPTSPAY 1650



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PT+  +   +P  SP S S+S +  S  PTS AY
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1699



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 182  PGPSPGRHAATXXXXXXXXSNP---PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PG SP     +        ++P   PT+ G+   +P  SP S  +S +  +  PTS +Y
Sbjct: 1543 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1601



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -3

Query: 248  PLVRTSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSP 72
            P V   + S  S  G +P      P SPG    +           PT+  +   +P  SP
Sbjct: 1530 PYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1589

Query: 71   QSQSFSRSYGSVLPTSLAY 15
             S ++S +  S  PTS +Y
Sbjct: 1590 TSPAYSPTSPSYSPTSPSY 1608

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>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   PMEQCRQGKSAKRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDR 181
           P  +  +G S+    + G   GS +W  G RP+       C   +R E+    A  G D 
Sbjct: 523 PRARSEEGASSDSSASTGSHEGSSEW--GGRPQ------GCPGKARAETSQQEASEGGDP 574

Query: 182 ESPLRELSPSMKQSTQ-NWYGQG 247
            SP   LS       Q    GQG
Sbjct: 575 ASPALSLSSLRSDDLQAETQGQG 597

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>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2|
          Length = 957

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 210 LGESSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRDPRAQ 76
           + +S +R     VPRPAR  P++P  + E+S+  ++ R RD R +
Sbjct: 310 VSQSLQRPPKPKVPRPAR--PVTPAAKTEKSSEKKQSRHRDRRPE 352

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>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1174

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = -3

Query: 251 IPLVRTSSESTVSCSGKAPEGAIPGPSP--GRHAATXXXXXXXXSNPPTADGFGAGTPEP 78
           +   R S  +T + S  AP     G  P  G    +         N  T  G+G    + 
Sbjct: 666 VDAARASYSTTGTASTGAPTSPTSGSRPPSGPRTQSSVAAAAAAMNKATQPGYGRSNTDY 725

Query: 77  SPQSQSFSRSYGSVLPT 27
           SPQS    RS GS  PT
Sbjct: 726 SPQS---GRSSGSGYPT 739

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>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1) (HFH-1l)
          Length = 400

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 239 RTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 60
           R S  +TVS SG  PE A PGP+    AA          +P       A   E S  +  
Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPAGTPQAAPAARSSPIARSP-------ARQEERSSPASK 263

Query: 59  FSRSY 45
           FS S+
Sbjct: 264 FSSSF 268

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>MSH6_SCHPO (O74502) DNA mismatch repair protein msh6|
          Length = 1254

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 230 SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 51
           + S V+ +  +PE  +P  SP  HA T          PP++D F       SP S S  R
Sbjct: 62  NSSNVNKNSSSPERELP-TSPSHHANTEIDSSSSMLPPPSSDPFS------SPLSSSLHR 114

Query: 50  S 48
           S
Sbjct: 115 S 115

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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PT+ GFG  +P  SP S ++S +  +  PTS +Y
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY 1563



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 236  TSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQS 60
            TS    VS  G +P      P SP     +        S  PT+  +   +P  SP S S
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1590

Query: 59   FSRSYGSVLPTSLAY 15
            +S +  S  PTS +Y
Sbjct: 1591 YSPTSPSYSPTSPSY 1605



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -3

Query: 206  GKAPEGAIPG---PSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSV 36
            G+AP    PG    SPG    +        +  PT+  +   +P  SP S S+S +  S 
Sbjct: 1527 GEAPTS--PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584

Query: 35   LPTSLAY 15
             PTS +Y
Sbjct: 1585 SPTSPSY 1591



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PT+  +   +P  SP S S+S +  S  PTS AY
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661

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>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 248 PLVRTSSESTVSCSGKAPEGAIPGPSP 168
           P V  S+E  + C G +PE   PGP+P
Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484

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>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1154

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 224 STVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNP--PTADGFGAGTPEPSP 72
           +TV+ +G    GA P P+PG  AAT          P   T D    G P P P
Sbjct: 384 TTVTMTGN---GARPPPAPGAEAATPGSAQATSLPPSSTTVDSSTEGAPPPGP 433

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>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase|
           type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase
           9) (xlAC)
          Length = 1305

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 95  PRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSMKQSTQNWY 238
           P  R   +  SSCS GESG  + G G+      ++L    ++ST NW+
Sbjct: 38  PSRRCKYSISSSCSSGESGVKKTG-GSGGARRQKKLPQLFERSTSNWW 84

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>ASH2L_MOUSE (Q91X20) Set1/Ash2 histone methyltransferase complex subunit ASH2|
           (ASH2-like protein)
          Length = 623

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +1

Query: 73  GLGSGVPA-PNPSAVGGXXXXXXXXXXVAACRPGDGPGIAPSGAFP---EHETVDSELVR 240
           G G GV A P P A               A   G+GP  AP GA P   E E+ D+ LV 
Sbjct: 7   GPGPGVSAGPGPGAAASATTAEDRETEPVAAGAGEGPSAAP-GAEPSSGEAESGDANLVD 65

Query: 241 TRGI 252
             G+
Sbjct: 66  VSGL 69

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>VE2_HPV08 (P06422) Regulatory protein E2|
          Length = 498

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
 Frame = +2

Query: 20  QGKSAKRIRNFGK----RIGSEDWARGSRPRTR---RLLADCSSCSRGESGSPRAGRGTD 178
           + +S  R+R  G     R  S    +  RPR+R   R  A  +S  R   GSPR  R T 
Sbjct: 274 RSRSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSRGRATATSRRRAGRGSPRRRRSTS 333

Query: 179 RESPLRELSPSMKQSTQNWYGQG 247
           R         S +   +   G+G
Sbjct: 334 RSPSTNTFKRSQRGGGRRGRGRG 356

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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 209  SGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLP 30
            S  +P  +   P+ G+   +        S  PT+  +   +P  SP S S+S +  S  P
Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649

Query: 29   TSLAY 15
            TS +Y
Sbjct: 1650 TSPSY 1654



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = -3

Query: 248  PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 69
            P    + +S VS S      +    SP     +        S  PT+  +   +P  SP 
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1657

Query: 68   SQSFSRSYGSVLPTSLAY 15
            S S+S S  S  P+S  Y
Sbjct: 1658 SPSYSPSSPSYSPSSPRY 1675

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 182 PGPSPGRHAATXXXXXXXXSNPPTA---DGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYI 12
           PGP+PG  +A         + PPT+    G G G P P+P     S   G+  PT  +  
Sbjct: 115 PGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG-PTPTPPPAVTSAPPGAPPPTPPSSG 173

Query: 11  VP 6
           VP
Sbjct: 174 VP 175

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>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4|
          Length = 972

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 65  GSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSMKQST 226
           GSE   +  R R  ++ +   S    +   P+ GRG  R  PL  + PS+ + T
Sbjct: 117 GSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGRGRPRLHPLPVVQPSVDEGT 170

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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 215 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 39
           S  G  P+     P+   ++ T         N  PT+  +   +P  SP S S+S +  S
Sbjct: 101 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 160

Query: 38  VLPTSLAY 15
             PTS +Y
Sbjct: 161 YSPTSPSY 168

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PT+  + A +P  SP S S+S +  S  PTS +Y
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY 1634



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 173  SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            SP   A +        S  PT+  +   +P  SP S S+S +  S  PTS +Y
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = -3

Query: 230  SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 51
            S S  S S  A   +    SP     +        S  PT+  +   +P  SP S S+S 
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657

Query: 50   SYGSVLPTSLAY 15
            +  S  PTS +Y
Sbjct: 1658 TSPSYSPTSPSY 1669



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAY 15
            PT+  +   +P  SP S S+S +  S  PTS +Y
Sbjct: 1587 PTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 215  SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 39
            S  G  P+     P+   ++ T         N  PT+  +   +P  SP S S+S +  S
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663

Query: 38   VLPTSLAY 15
              PTS +Y
Sbjct: 1664 YSPTSPSY 1671

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 215  SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSN-PPTADGFGAGTPEPSPQSQSFSRSYGS 39
            S  G  P+     P+   ++ T         N  PT+  +   +P  SP S S+S +  S
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663

Query: 38   VLPTSLAY 15
              PTS +Y
Sbjct: 1664 YSPTSPSY 1671

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>DCP2_ASHGO (Q75BK1) mRNA decapping enzyme 2 (EC 3.-.-.-)|
          Length = 880

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/60 (35%), Positives = 23/60 (38%)
 Frame = -3

Query: 248 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 69
           PLV +  ES  S S  AP    P PS     +            P A G  AG P P PQ
Sbjct: 287 PLVFSDDESQASISTSAPTTVPPAPSTANSQSV----------QPIAAGAYAGYPFPFPQ 336

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>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)|
          Length = 249

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
 Frame = -3

Query: 215 SCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSF------S 54
           S S   P    PG S G   +           PPTA   G   P P P   S+       
Sbjct: 8   SGSNPTPAPPPPGSSGGYEPSFAPSELGSAYPPPTAPPVGGSYPPPPPPGGSYPPPPPPG 67

Query: 53  RSYGSVLPTSLAYIVP 6
            SY    P++ AY  P
Sbjct: 68  GSYPPPPPSTGAYAPP 83

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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -3

Query: 218  VSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYG 42
            VS  G +P      P SP     +        S  PT+  +   +P  SP S S+S +  
Sbjct: 1540 VSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1599

Query: 41   SVLPTSLAY 15
            S  PTS +Y
Sbjct: 1600 SYSPTSPSY 1608

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>ATU_DROME (Q94546) Another transcription unit protein|
          Length = 725

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 53  GKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSMK 217
           G   GS+   R      R      SS SR  SGSPR+ R    ES   +LS S +
Sbjct: 28  GSAPGSQRSRRSGSGSDRSRSGSRSSRSRSGSGSPRSARSGSAESRHSQLSGSAR 82

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>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)|
          Length = 586

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -3

Query: 197 PEGAIPGPSPGRHAATXXXXXXXXS-----NPPTADGFGAGTPEPSPQSQSFSRSYGSVL 33
           PE   P P+PG  AAT        S      PP A    A  P+P+PQ    + S GS  
Sbjct: 29  PEPQQPPPAPGPGAATASAATSAASPGPERRPPPAQ---APAPQPAPQPAP-TPSVGSSF 84

Query: 32  PTSLAYIV 9
            +SL+  V
Sbjct: 85  FSSLSQAV 92

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>DTX1_XENLA (Q8AW93) Protein deltex-1 (xDtx1)|
          Length = 623

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 6   WNNVGKGSRQNGSVTSGKGLALRTGLGGPGPEP 104
           W   G+G R  G + +G G +    + G  P P
Sbjct: 259 WGRTGEGMRSTGGIRNGSGFSRSQSVPGAAPYP 291

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>ATPBM_ARATH (P83483) ATP synthase beta chain 1, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 556

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 245 LVRTSS-ESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 69
           L+R+SS  S      + P   +P PSP RHAA         +   T+    +  P  +P 
Sbjct: 10  LLRSSSGRSAAKLGNRNPR--LPSPSPARHAAPCSYLLGRVAEYATSSPASSAAPSSAPA 67

Query: 68  SQSFSRSY 45
                ++Y
Sbjct: 68  KDEGKKTY 75

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>MEI9_DROME (Q24087) Protein mei-9 (Protein meiotic 9)|
          Length = 961

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 135 EQLEQSANSRRVRGRDPRAQSSEPILFPKLRIRFADFPCL 16
           E  +++A SR+  G+ P+A    P +   +R   +D PCL
Sbjct: 673 EPTDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCL 712

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>CADHK_CHICK (P33145) B-cadherin precursor (K-CAM protein) (Fragment)|
          Length = 732

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 206 GKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTP-EPSPQSQSFSRSYGSV 36
           G  PEGA+PG S  R  AT         N   A    +  P EP P   + +R+ G++
Sbjct: 121 GSVPEGALPGTSVMRVNATDADDDVETYNGVIAYSILSQEPREPHPHMFTVNRATGTL 178

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>VE2_HPV37 (Q80903) Regulatory protein E2|
          Length = 454

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +2

Query: 11  QCRQGKSAKRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGR-GTDRES 187
           Q RQG+     R+     G +  +RG   R RR      S SR  S SP  GR G  R  
Sbjct: 257 QKRQGEDTATRRSRSTSRGKQATSRGGDRRRRRRE---RSYSRDTSSSPDRGRGGRSRGG 313

Query: 188 P-LRELSPSMKQSTQNWYGQGES 253
           P  R  S S+ +S      +G S
Sbjct: 314 PETRSQSRSLSRSRSRSRSRGSS 336

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>PYRB1_PEA (Q43086) Aspartate carbamoyltransferase 1, chloroplast precursor|
           (EC 2.1.3.2) (Aspartate transcarbamylase 1) (ATCase 1)
          Length = 386

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 118 GXXXXXXXXXXVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 258
           G          +     GDGPG  PS A  +  T++ E+ +  GI++
Sbjct: 188 GAARRAAATANIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 234

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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 116  PTADGFGAGTPEPSPQSQSFSRSYGSVLPTSLAYIVPL 3
            PT+  +   +P  SP S S+S +  S  PTS +Y V +
Sbjct: 1538 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSM 1575

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>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 628

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 242 VRTSSESTVSCSGKAPEGAIPGPSP 168
           V  S+E  + C G +PE   PGP+P
Sbjct: 462 VGPSTEERMDCEGSSPEPEPPGPAP 486

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>ODO2_PIG (Q9N0F1) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2K)
          Length = 455

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = -3

Query: 221 TVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSRSYG 42
           T+  +G AP  A P  +P   A            PP A       P PSP     S+   
Sbjct: 143 TLRKTGAAPAKAKPAEAPAAAAPKAEPAVSAVPPPPAASIPTQMPPVPSPPQPLTSKPVS 202

Query: 41  SVLPTS 24
           +V PT+
Sbjct: 203 AVKPTA 208

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>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)|
          Length = 1317

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 248 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAAT 150
           P+  TSS S++S SG+A   A+   + G  AAT
Sbjct: 129 PVFTTSSTSSISTSGEASSTAVAAAAAGSVAAT 161

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>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +2

Query: 14  CRQG--KSAKRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDRES 187
           CR+G  +S +R         S    R  R R        +  SRG  G  R GRG  R  
Sbjct: 320 CRRGGGRSPRRRSRSPSTSSSCTTQRSQRARAESSTTRGARGSRGSRGGSRGGRGRRRGR 379

Query: 188 PLRELSPSMKQS 223
                SP+ K+S
Sbjct: 380 SSSSSSPAHKRS 391

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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 224 STVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNP--PTADGFGAGTPEPSP 72
           +TV+ +G    GA P P+PG  AA+          P   T D    G P P P
Sbjct: 378 TTVTMTGN---GARPPPAPGAEAASPGSGQASSLPPSSATVDSSTEGAPPPGP 427

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
 Frame = -3

Query: 209 SGKAPEGAI-PGPSPGRHAATXXXXXXXXS---NPPTADGFGAGTPEPSP 72
           SGK P     PGP PG +  +             PP + G GA  P P P
Sbjct: 144 SGKTPRPVPKPGPRPGNNPFSSTASGMGTRPTPRPPASGGTGAPRPGPRP 193

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>ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 447

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
 Frame = -3

Query: 263 LNSRIPLVRTSSE--STVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAG 90
           +N+ I ++    E  +T +  G    GA+P P P   A T        +  P      A 
Sbjct: 70  VNALIAVLAAEGEDVATAAKGGNGAAGAVPAPKPKETAETAPAAAPAPAAAPAPQ--AAA 127

Query: 89  TPEPSPQSQSFSRSYGSVLPTSLA 18
              P+P      R + S L   LA
Sbjct: 128 PASPAPADGEGKRIFSSPLARRLA 151

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>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
 Frame = -3

Query: 251 IPLVRTSSESTVSCSGKAPEGAIPGPSP------GRHAATXXXXXXXXSNPPTADGFGAG 90
           +PL   +  + ++ SG A   A  G  P      G             + P  A    A 
Sbjct: 264 LPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAP 323

Query: 89  TPEPSPQSQSFSRSYGSVLPTSLA 18
            P P+PQS + S+   +  P +LA
Sbjct: 324 APAPAPQSAASSQPQSASTPPALA 347

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>SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4|
          Length = 974

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 177  SVPRPARGDPLSPREQLEQSANSRRVRGRDPRAQSSEPI 61
            S P   R +PL+P E LE  A      G DP A +S+ +
Sbjct: 907  SDPGSVRLEPLTPSEVLEYEATEILHDGDDPSANTSDTV 945

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 206 GKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 69
           G A  GA PGP PG  A          +N P + G  A  P P P+
Sbjct: 152 GGAKPGAKPGPKPGGRAP-------RVANNPFSSGAPAERPAPRPR 190

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>ATPBN_ARATH (P83484) ATP synthase beta chain 2, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 556

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -3

Query: 245 LVRTSS-ESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQ 69
           L+R+SS  S      + P   +P PSP RHAA         +   T+    +  P  +P 
Sbjct: 10  LLRSSSGRSAAKLVNRNPR--LPSPSPARHAAPCSYLLGRVAEYATSSPASSAAPSSAPA 67

Query: 68  SQSFSRSY 45
                ++Y
Sbjct: 68  KDEGKKTY 75

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>SCNNA_CAVPO (Q9R1N2) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 682

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 213 MLGESSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRDPR 82
           + G  SRR  + ++P P +  P+ P  +  +S++   VR  +PR
Sbjct: 197 LAGARSRRSLADTLPYPLQRIPVQPEPRRARSSDPSSVRDNNPR 240

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>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 236 TSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEP 78
           +S  S+ SC+  +P G  PGPS                 PP +   GA +  P
Sbjct: 259 SSPASSGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSESP 311

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>KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription factor BTEB4)|
           (Basic transcription element-binding protein 4)
           (BTE-binding protein 4) (Novel Sp1-like zinc finger
           transcription factor 2) (Transcription factor NSLP2)
          Length = 252

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 85  GVPAPNPSAVGGXXXXXXXXXXVAACRPGD---GPGIAPSGAFP 207
           G P P P+A G           +AA    D   GPG AP GA P
Sbjct: 57  GPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASP 100

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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 204 ESSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRDPRAQSS 70
           +SSR+  +R     +RG   S  EQ   S   R   G    A SS
Sbjct: 351 DSSRQSGTRHAETSSRGQTASSHEQARSSPGERHGSGHQQSADSS 395

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>GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outgrowth 2 (GRIN2)|
          Length = 458

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 183 SRSVPRPARGDPLSPREQ-LEQSANSRRVRGRDPRAQ 76
           S S P P    PLSPR Q L QS++S    GR+ R +
Sbjct: 2   SSSRPEPGPWAPLSPRLQPLSQSSSSLLGEGREQRPE 38

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>PYRB3_PEA (Q43064) Aspartate carbamoyltransferase 3, chloroplast precursor|
           (EC 2.1.3.2) (Aspartate transcarbamylase 3) (ATCase 3)
          Length = 391

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 118 GXXXXXXXXXXVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 258
           G          +     GDGPG  PS A  +  T++ E+ +  GI++
Sbjct: 193 GAARRAAAIAGIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 239

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/69 (28%), Positives = 27/69 (39%)
 Frame = -3

Query: 236 TSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSF 57
           +SS S+ S  G+  EG  PG    R            + PP +    A  P PS  S S 
Sbjct: 397 SSSSSSSSSEGEEDEGVRPGAPLAR------------AGPPPSPPAPAAAPRPSASSASA 444

Query: 56  SRSYGSVLP 30
           + S  +  P
Sbjct: 445 TSSSAAASP 453

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>COX10_EMENI (Q5BCK8) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 506

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
 Frame = -2

Query: 201 SSRRGDSRSVPRPARGDPLSPRE----------------QLEQSANSRRVRGRDPRAQS- 73
           SS +GDS   P+P+    LSP                  +L +  + RR R ++  AQ+ 
Sbjct: 61  SSHKGDSHLTPQPSLFTSLSPSNSPSQLNRGHSTPSTSPELSELPHRRRKRLKEAAAQNN 120

Query: 72  -SEPILFPKLRIRFADF 25
            +EP++ P    + ++F
Sbjct: 121 GAEPVIPPDASAQLSNF 137

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>PYRB2_PEA (Q43087) Aspartate carbamoyltransferase 2, chloroplast precursor|
           (EC 2.1.3.2) (Aspartate transcarbamylase 2) (ATCase 2)
          Length = 385

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 118 GXXXXXXXXXXVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 258
           G          +     GDGPG  PS A  +  T++ E+ +  GI++
Sbjct: 187 GAARRAATIAGIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 233

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>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor|
           (LRP)
          Length = 4753

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 233 WYGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 331
           W   G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299

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>HTF4_CHICK (P30985) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (Class A helix-loop-helix
           transcription factor GE1) (Fragment)
          Length = 657

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = -3

Query: 230 SESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSPQSQSFSR 51
           S+S V   G    G+  G + G+  A+        S+ P+      G+P P   +  +SR
Sbjct: 267 SDSIVGTKGNGAGGSQTGDALGKALASIYSPDHTSSSFPSNPSTPVGSPSPLTGASQWSR 326

Query: 50  SYGSVLPTSLAY 15
           S G   P+S  Y
Sbjct: 327 S-GGQAPSSPNY 337

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>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting protein-related|
            receptor containing LDLR class A repeats) (SorLA)
            (SorLA-1) (Low-density lipoprotein receptor relative with
            11 ligand-binding repeats) (LDLR relative with 11
            ligand-binding
          Length = 2213

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 191  LRELSPSMKQSTQNWYGQGESDCLIKTKHCDGPRGC 298
            L   +P+      N+Y  G   C+I T  CDG R C
Sbjct: 1408 LPSTTPAPSTCLPNYYRCGGGACVIDTWVCDGYRDC 1443

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>KCNE3_RAT (Q9JJV7) Potassium voltage-gated channel subfamily E member 3|
           (Minimum potassium ion channel-related peptide 2)
           (Potassium channel beta subunit MiRP2) (MinK-related
           peptide 2)
          Length = 107

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 160 CRPGDGPGIAPSGAFPEHETVD 225
           CRPG GPG   SG  P+++T D
Sbjct: 31  CRPGPGPG---SGTGPDNQTED 49

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>YKS3_YEAST (P34234) Protein YKL183W|
          Length = 306

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 256 VGFPLSVPVLSRLFHARGKLPKGR 185
           +G+ L +P  S L+HA  +LP GR
Sbjct: 98  LGYGLEIPYSSVLYHASRRLPDGR 121

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 27/80 (33%), Positives = 33/80 (41%)
 Frame = +2

Query: 35  KRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSM 214
           KR R+  +    +D  RGS P   RL    SS  RGE  S R G G      L  L  S+
Sbjct: 10  KRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHS-RGGTGR-----LASLFSSL 63

Query: 215 KQSTQNWYGQGESDCLIKTK 274
           +   Q  Y       + KTK
Sbjct: 64  EPQIQPVYVPVPKQTIKKTK 83

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>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = +2

Query: 20  QGKSAKRIRNFGKRIGSEDWARGSRPRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRE 199
           +G+ +K++   G   GS      S   +RR L    S SRG S     G G+        
Sbjct: 67  RGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSSSRLHSY 126

Query: 200 LSPSMKQSTQNWYGQGES 253
            SPS K S+    G GES
Sbjct: 127 SSPSTKNSS----GGGES 140

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 248  PLVRTSSESTVSCSGKAPEGAIPGP-SPGRHAATXXXXXXXXSNPPTADGFGAGTPEPSP 72
            P   + S ++ +  G++P      P SP     +        S  PT+  +   +P  SP
Sbjct: 1594 PTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1653

Query: 71   QSQSFSRSYGSVLPTSLAY 15
             S S+S +  S  PTS +Y
Sbjct: 1654 TSPSYSPTSPSYSPTSPSY 1672

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>FLID_VIBCH (Q9KQ63) Flagellar hook-associated protein 2 (HAP2) (Filament cap|
           protein) (Flagellar cap protein)
          Length = 666

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 201 SSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRDPRAQSSEPILFP 52
           S+  G   SV   A+ +P +P +QLE     +RVR  +     ++ ++ P
Sbjct: 177 SNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAP 226

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>HM43_CAEEL (Q18273) Homeobox protein ceh-43|
          Length = 273

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 109 AVGGXXXXXXXXXXVAACRPGDGPGIAPSGAFPEHET 219
           A GG            A  P  GPG +P  AFPEH T
Sbjct: 49  ATGGSMYGTPQQTSAYAMYP-PGPGSSPEEAFPEHTT 84

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>LDLR_RABIT (P20063) Low-density lipoprotein receptor (LDL receptor) (Fragment)|
          Length = 837

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
 Frame = +2

Query: 11  QCRQGK--SAKRIRNFGKRI--GSEDWARGSRPRTRRLLADCSSC----SRGESGSPRAG 166
           QCR GK  S K + +       GS++W +     T +  +D  SC    +R   G  +  
Sbjct: 20  QCRNGKCISYKWVCDGSSECQDGSDEWEQTCMSLTCK--SDDFSCGGRLNRCIPGHWKCD 77

Query: 167 RGTDRESPLRELSPSMKQSTQNWYGQGESDCLIKTKHCDGPRGC*RNVISAQCS 328
              D E    EL  + K  +Q+ +   E  C+ +   CDG   C      A C+
Sbjct: 78  GQQDCEDGSDELGCAPKTCSQDEFRCAEGACISRLFACDGEPDCPDGSDEASCA 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,342,116
Number of Sequences: 219361
Number of extensions: 1136308
Number of successful extensions: 4775
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 4101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4723
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result