ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X91347.1|HVUDPGPP H.vulgare mRNA for UDP-glucose pyrophospho... 48 0.003
2gb|BT009219.1| Triticum aestivum clone wle1n.pk0063.d7:fis, full... 40 0.65
3gb|BC104676.1| Rattus norvegicus serine/threonine kinase 6, mRNA... 38 2.6
4ref|NM_153296.2| Rattus norvegicus serine/threonine kinase 6 (St... 38 2.6

>emb|X91347.1|HVUDPGPP H.vulgare mRNA for UDP-glucose pyrophosphorylase
          Length = 1783

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 43 ttccagtcatctgacatctcctcc 66
          ||||||||||||||||||||||||
Sbjct: 27 ttccagtcatctgacatctcctcc 50



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>gb|BT009219.1| Triticum aestivum clone wle1n.pk0063.d7:fis, full insert mRNA
          sequence
          Length = 1814

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 43 ttccagtcatctgacatctcctcc 66
          ||||||||||||||||||| ||||
Sbjct: 20 ttccagtcatctgacatctgctcc 43



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>gb|BC104676.1| Rattus norvegicus serine/threonine kinase 6, mRNA (cDNA clone
            MGC:124935 IMAGE:7453115), complete cds
          Length = 2384

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   ttccagtcatctgacatct 61
            |||||||||||||||||||
Sbjct: 1959 ttccagtcatctgacatct 1941



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>ref|NM_153296.2| Rattus norvegicus serine/threonine kinase 6 (Stk6), mRNA
          Length = 2384

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   ttccagtcatctgacatct 61
            |||||||||||||||||||
Sbjct: 1959 ttccagtcatctgacatct 1941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,096
Number of Sequences: 3902068
Number of extensions: 139096
Number of successful extensions: 8312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8308
Number of HSP's gapped (non-prelim): 4
length of query: 67
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 46
effective length of database: 17,151,101,840
effective search space: 788950684640
effective search space used: 788950684640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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