>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = -1

Query: 433 APRTLLLDGIAAAGPGRRDVAPGSIAFLFLSAATAVTAAITLSQQRMISAASAWCSACTG 254
           AP T    G  A  P     +  S A    +AA A  AA  L    + SAA  W +A +G
Sbjct: 182 APPTTAAAGALAGSPTSSSPS-SSAASAAAAAAAAAAAAADLGAAAVASAAYGWNTAYSG 240

Query: 253 GDAARSSSP 227
              ARS  P
Sbjct: 241 LGPARSQFP 249

>PHEB_POLBO (Q01922) R-phycoerythrin beta chain|
          Length = 177

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 156 MALGTPTAVVLELMTMGQQSAAHLGELLRAASPP----VQAEHQALAAEIIRCCDRVIAA 323
           +ALG PT   +  +++    AA +  +   AS      ++ +  ALA+E+   CDRV+AA
Sbjct: 118 IALGVPTNSTVRAVSI--MKAAAVCFISNTASQRKVEVIEGDCSALASEVASYCDRVVAA 175

Query: 324 VT 329
           V+
Sbjct: 176 VS 177

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -1

Query: 334 TAVTAAITLSQQRMISAASAWCSACTGGDAARSSSPRCAADCCPIVISSSTTAVGVPSAM 155
           TA ++A+T+S   +++A +    A  GG    + +   A+   P V +SSTTA    S+ 
Sbjct: 93  TAASSAVTVSLAAVVAAVAETGGAGAGG----AGTAVTASGAGPCVSTSSTTAAAATSST 148

Query: 154 ARVSALLARSN 122
           + +S+  + S+
Sbjct: 149 SSLSSSSSSSS 159



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = -1

Query: 409 GIAAAGPGRRDVAPGSIAFLFLSAATAVTAAITLSQQRMISAASAWCSACTGGDAARSSS 230
           G  A G G    A G+   +  S+ TA  AA T S   + S++S+  S  +   +A  ++
Sbjct: 115 GAGAGGAGTAVTASGAGPCVSTSSTTA--AAATSSTSSLSSSSSSSSSTSSSTSSASPTA 172

Query: 229 PRCAADCCPIVISSST 182
              +   CP   SSS+
Sbjct: 173 GASSTATCPASSSSSS 188

>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 413 GRHRGRGTWTAGCSAGVHSLPLFIGGDR 330
           GR RGRG W+ G   GV  +   +  D+
Sbjct: 338 GRGRGRGDWSVGAPGGVQEITYTVPADK 365

>SIM1_YEAST (P40472) Protein SIM1 precursor|
          Length = 475

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -1

Query: 376 VAPGSIAFLFLSAATAVTAAITLSQQRMISAASAWCSACTGGDAARSSSPRCAADCCPIV 197
           +AP S A   ++A+ AV++A  L++   IS A+A  +A T   A+ SSS   A       
Sbjct: 76  LAPTSSAAAGIAASIAVSSA-ALAKNEKISDAAASATASTSQGASSSSSSSSATSTLESS 134

Query: 196 ISSSTTAVGVPSA 158
             SS++    P++
Sbjct: 135 SVSSSSEEAAPTS 147

>ARGJ_SYMTH (Q67KC5) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 402

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
 Frame = -1

Query: 406 IAAAGPGRRDVA------PGSIAFLFLS-----AATAVTAAIT-LSQQRMISAASAWCSA 263
           I   G G++DVA      P + A ++ +     A   +T   T   + + + A S   +A
Sbjct: 23  IKGNGAGKKDVALLASRVPCAAAGVYTTNLVKAAPVVLTRGRTETGELQAVVANSGNANA 82

Query: 262 CTGGDAARSSSP--RCAADCCPI----VISSSTTAVGVPSAMARVSALLARSNLAL 113
           CTG    R ++   R AA+   I    +  +ST  +GVP  M RVSA +  +  AL
Sbjct: 83  CTGEQGMRDAAEMARLAAEALGIRPELMGVASTGVIGVPLPMDRVSAGIRAAAAAL 138

>FOXE3_HUMAN (Q13461) Forkhead box protein E3 (Forkhead-related protein FKHL12)|
           (Forkhead-related transcription factor 8) (FREAC-8)
          Length = 319

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 31/107 (28%), Positives = 43/107 (40%)
 Frame = -1

Query: 433 APRTLLLDGIAAAGPGRRDVAPGSIAFLFLSAATAVTAAITLSQQRMISAASAWCSACTG 254
           AP   LL    +AGPG     P   A LF     +V + + L Q  +    +     C  
Sbjct: 194 APGPALLVPPPSAGPG-----PSPPARLF-----SVDSLVNL-QPELAGLGAPEPPCCAA 242

Query: 253 GDAARSSSPRCAADCCPIVISSSTTAVGVPSAMARVSALLARSNLAL 113
            DAA ++ P CAA   P + S     + +P+       L A   LAL
Sbjct: 243 PDAAAAAFPPCAAAASPPLYSQVPDRLVLPATRPGPGPLPAEPLLAL 289

>RS5_ARCFU (O28374) 30S ribosomal protein S5P|
          Length = 198

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 416 FGRHRGRGTWTAGCSAGVHSLPLFIGGDRG 327
           F   RG G+W  GC  G HSLP  + G  G
Sbjct: 107 FKVQRGCGSWECGC-GGDHSLPFKVTGTSG 135

>METE_STRAW (Q82LG4) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 772

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/82 (26%), Positives = 32/82 (39%)
 Frame = +3

Query: 183 VLELMTMGQQSAAHLGELLRAASPPVQAEHQALAAEIIRCCDRVIAAVTAVAADKKRKAM 362
           VL  +   +Q  A +  L +       A    LAA       R  +A+T   A + R A 
Sbjct: 354 VLRWLAFARQKTAEIVTLAKGLGHGTDAIAAQLAANRADLVSRADSALTRDPAVRSRTAA 413

Query: 363 DPGATSRRPGPAAAMPSKRRVR 428
              A +RR GP     + +R R
Sbjct: 414 TTDADARRSGPYPERAAAQRAR 435

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 343 SAATAVTAAITLSQQRMISAASAWCSACTGGDAARSSSPRCAADCCPIVISSSTTAVGVP 164
           S+A +   +   S     SAAS+  S+     AA SS+P  A+   P   SSS  +    
Sbjct: 476 SSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSAS 535

Query: 163 SAMARVSA 140
           S+ A  +A
Sbjct: 536 SSAASSAA 543

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 376  VAPGSIAFLFLSAATAV--TAAITLSQQRMISAASAWCSACTGGDAARSSSPRCAADCCP 203
            VAP S+     +AATA   TA        M++AA    +A     AA + SP  AA    
Sbjct: 878  VAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAA 937

Query: 202  IVISSSTTAVGVPSAMARVSA 140
             V  S   A  +P+A +  SA
Sbjct: 938  AV--SPAAAGQIPAAASVASA 956

>HYSA_PROAC (Q59634) Hyaluronate lyase precursor (EC 4.2.2.1) (Hyaluronidase)|
           (HYase)
          Length = 813

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 391 PGRRDVAPGS-IAFLFLSAATAVTAAITLSQQRMISA-ASAWCSACTGGDAARSSSPRCA 218
           P RR     S ++ + L+A+  VT AI        SA    W    TG  AAR+S PR  
Sbjct: 5   PSRRTFLTASALSAMALAASPTVTDAIAAPGPDSWSALCERWIDIITGRRAARTSDPRAR 64

Query: 217 A 215
           A
Sbjct: 65  A 65

>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 366 PGATSRRPGPAAAMPSKRRVRG 431
           PG T   PGPA+  P + R RG
Sbjct: 699 PGLTEEAPGPASPTPPRARARG 720

>PG35_MYCTU (Q10873) Hypothetical PE-PGRS family protein PE_PGRS35|
          Length = 558

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +3

Query: 180 VVLELMTMGQQSAAHLGELLRAASPPVQAEHQALAAEIIRCCDRVIAAVTAVAA 341
           VV E +T       ++G  LRAA+    A   ALAA      D V AAV A+ A
Sbjct: 6   VVPEFLTSAAADVENIGSTLRAANAAAAASTTALAA---AGADEVSAAVAALFA 56

>TIR1_YEAST (P10863) Cold shock-induced protein TIR1 precursor (Serine-rich|
           protein 1)
          Length = 254

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 27/98 (27%), Positives = 46/98 (46%)
 Frame = -1

Query: 433 APRTLLLDGIAAAGPGRRDVAPGSIAFLFLSAATAVTAAITLSQQRMISAASAWCSACTG 254
           A ++L  D  ++A P     AP S A    SAA   +AA + S+ +  SAA +  S    
Sbjct: 105 ALKSLNGDASSSAAPSS-SAAPTSSAAPSSSAAPTSSAASSSSEAKSSSAAPS-SSEAKS 162

Query: 253 GDAARSSSPRCAADCCPIVISSSTTAVGVPSAMARVSA 140
             AA SSS   ++   P    + +++    S  A++++
Sbjct: 163 SSAAPSSSEAKSSSAAPSSSEAKSSSAAPSSTEAKITS 200

>YJCZ_ECOLI (P39267) Hypothetical protein yjcZ|
          Length = 292

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 153 AMALGTPTAVVLELMTMGQQSAAHLGELLRAASPPVQAEHQALAAEII 296
           A  LG+P AV L L  + +++  HL E + AA       HQ  A+  +
Sbjct: 183 ACRLGSPQAVALLLGDLLEKATQHLAESINAAPTTRHYYHQWFASSTV 230

>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)|
           (Ribosomal RNA-processing protein 44) (DIS3 protein
           homolog)
          Length = 1029

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 38  KRSWSTYCPILVPSSIELAEQRL 106
           KR+W  YC +L+PS+++ A + L
Sbjct: 359 KRNWREYCGMLLPSTVKGARRHL 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.125    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,687,061
Number of Sequences: 219361
Number of extensions: 794434
Number of successful extensions: 3723
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3708
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)