ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190360.1| Oryza sativa (japonica cultivar-group), predic... 109 8e-21
2tpg|BK005024.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 109 8e-21
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
5dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
6dbj|AK108657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
7gb|AY870606.1| Oryza sativa (japonica cultivar-group) WRKY21 mRN... 109 8e-21
8gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 44 0.38
9emb|BX571826.20| Zebrafish DNA sequence from clone DKEY-250K15 i... 44 0.38
10dbj|AB079768.1| Pseudomonas aeruginosa hcuA, hcuB, hcuC genes fo... 44 0.38
11emb|CR407453.1| Gallus gallus finished cDNA, clone ChEST786m6 44 0.38
12gb|AE004541.1| Pseudomonas aeruginosa PAO1, section 102 of 529 o... 44 0.38
13emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, co... 44 0.38
14gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
15gb|AE005873.1| Caulobacter crescentus CB15 section 199 of 359 of... 42 1.5
16gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22... 42 1.5
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
18emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.5
19gb|AE003585.5| Drosophila melanogaster chromosome 2L, section 6 ... 42 1.5
20gb|AC004442.1|AC004442 Drosophila melanogaster, chromosome 2L, r... 42 1.5
21ref|XM_363885.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.9
22gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.9
23dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 5.9
24gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.9
25gb|AY232675.1| Mirabilis jalapa CDC48-like protein mRNA, partial... 40 5.9
26gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, r... 40 5.9
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.9
28dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.9
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
30gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the ... 40 5.9
31gb|AE003837.3| Drosophila melanogaster chromosome 2R, section 13... 40 5.9
32gb|AC005449.1|AC005449 Drosophila melanogaster, chromosome 2R, r... 40 5.9
33dbj|D64157.1|AGMPRIIRS1 Cercopithecus aethiops mRNA for IRS-1(CO... 40 5.9 
>ref|NM_190360.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 843

 Score =  109 bits (55), Expect = 8e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                       
Query: 180 gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
           ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 28  gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 87

                          
Query: 240 cgggcggcgtccccg 254
           |||||||||||||||
Sbjct: 88  cgggcggcgtccccg 102



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 407 gccgtccaaaagaagggtgcgtggcgcgga 436
           |||| |||||||||||| ||||||||||||
Sbjct: 276 gccgaccaaaagaagggcgcgtggcgcgga 305
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>tpg|BK005024.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
           transcription factor 21 (WRKY21) gene, complete cds
          Length = 1057

 Score =  109 bits (55), Expect = 8e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                       
Query: 180 gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
           ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 28  gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 87

                          
Query: 240 cgggcggcgtccccg 254
           |||||||||||||||
Sbjct: 88  cgggcggcgtccccg 102
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                            
Query: 180      gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
                ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 35056085 gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 35056144

                               
Query: 240      cgggcggcgtccccg 254
                |||||||||||||||
Sbjct: 35056145 cgggcggcgtccccg 35056159
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>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485B12
          Length = 156047

 Score =  109 bits (55), Expect = 8e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                         
Query: 180   gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
             ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 63235 gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 63294

                            
Query: 240   cgggcggcgtccccg 254
             |||||||||||||||
Sbjct: 63295 cgggcggcgtccccg 63309
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>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0703B11
          Length = 144074

 Score =  109 bits (55), Expect = 8e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                          
Query: 180    gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
              ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 100313 gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 100372

                             
Query: 240    cgggcggcgtccccg 254
              |||||||||||||||
Sbjct: 100373 cgggcggcgtccccg 100387
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>dbj|AK108657.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E07, full
           insert sequence
          Length = 1521

 Score =  109 bits (55), Expect = 8e-21
 Identities = 125/148 (84%), Gaps = 9/148 (6%)
 Strand = Plus / Plus

                                                                       
Query: 180 gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
           ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 89  gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 148

                                                                       
Query: 240 cgggcggcgtccccgccggtgcaagcag------agcaccaagcgctcgccgcggagatc 293
           ||||||||||||   |||| ||| ||||      |||| || | ||||||||||||||||
Sbjct: 149 cgggcggcgtcc---ccggcgcaggcaggggatgagcagcaggagctcgccgcggagatc 205

                                       
Query: 294 atccgctgctgcgacagggtgatcgccg 321
            |||||||||||||| | || |||||||
Sbjct: 206 ctccgctgctgcgaccgcgtcatcgccg 233



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 407 gccgtccaaaagaagggtgcgtggcgcgga 436
           |||| |||||||||||| ||||||||||||
Sbjct: 337 gccgaccaaaagaagggcgcgtggcgcgga 366
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>gb|AY870606.1| Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds
          Length = 1032

 Score =  109 bits (55), Expect = 8e-21
 Identities = 125/148 (84%), Gaps = 9/148 (6%)
 Strand = Plus / Plus

                                                                       
Query: 180 gtggtgctggagctgatgacgatggggcagcagtccgcggcgcacctcggggagctgctc 239
           ||||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||
Sbjct: 80  gtggtgctggagctgatgacgatggggtaccagtcggcggcgtacctcggcgagctgctc 139

                                                                       
Query: 240 cgggcggcgtccccgccggtgcaagcag------agcaccaagcgctcgccgcggagatc 293
           ||||||||||||   |||| ||| ||||      |||| || | ||||||||||||||||
Sbjct: 140 cgggcggcgtcc---ccggcgcaggcaggggatgagcagcaggagctcgccgcggagatc 196

                                       
Query: 294 atccgctgctgcgacagggtgatcgccg 321
            |||||||||||||| | || |||||||
Sbjct: 197 ctccgctgctgcgaccgcgtcatcgccg 224



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 407 gccgtccaaaagaagggtgcgtggcgcgga 436
           |||| |||||||||||| ||||||||||||
Sbjct: 328 gccgaccaaaagaagggcgcgtggcgcgga 357
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 316     tcgccgcggtgaccgcggtcgccgcc 341
               |||||||| |||||||||||||||||
Sbjct: 2539725 tcgccgcgatgaccgcggtcgccgcc 2539750
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>emb|BX571826.20| Zebrafish DNA sequence from clone DKEY-250K15 in linkage group 16,
              complete sequence
          Length = 167796

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 29     gaaaagcagaaaagaagttggt 50
              ||||||||||||||||||||||
Sbjct: 148666 gaaaagcagaaaagaagttggt 148687
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>dbj|AB079768.1| Pseudomonas aeruginosa hcuA, hcuB, hcuC genes for hydrophobic
            compound transport factor, complete cds
          Length = 4799

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 306  gacagggtgatcgccgcggtga 327
            ||||||||||||||||||||||
Sbjct: 3009 gacagggtgatcgccgcggtga 2988
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>emb|CR407453.1| Gallus gallus finished cDNA, clone ChEST786m6
          Length = 763

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 185 gctggagctgatgacgatgggg 206
           ||||||||||||||||||||||
Sbjct: 634 gctggagctgatgacgatgggg 655
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>gb|AE004541.1| Pseudomonas aeruginosa PAO1, section 102 of 529 of the complete
            genome
          Length = 11840

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 306  gacagggtgatcgccgcggtga 327
            ||||||||||||||||||||||
Sbjct: 7278 gacagggtgatcgccgcggtga 7257
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>emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, complete sequence
          Length = 257502

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 29     gaaaagcagaaaagaagttggt 50
              ||||||||||||||||||||||
Sbjct: 101266 gaaaagcagaaaagaagttggt 101245
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 318     gccgcggtgaccgcggtcgcc 338
               |||||||||||||||||||||
Sbjct: 1630398 gccgcggtgaccgcggtcgcc 1630378
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>gb|AE005873.1| Caulobacter crescentus CB15 section 199 of 359 of the complete genome
          Length = 10022

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   acaagctcgacaccgaaaagc 35
            |||||||||||||||||||||
Sbjct: 3437 acaagctcgacaccgaaaagc 3417
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>gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
             BACR19B15, complete sequence
          Length = 180088

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   gctgatgacgatggggcagca 211
             |||||||||||||||||||||
Sbjct: 91913 gctgatgacgatggggcagca 91933
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 322     cggtgaccgcggtcgccgccg 342
               |||||||||||||||||||||
Sbjct: 2588056 cggtgaccgcggtcgccgccg 2588076
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 311     ggtgatcgccgcggtgaccgc 331
               |||||||||||||||||||||
Sbjct: 3070901 ggtgatcgccgcggtgaccgc 3070921
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>gb|AE003585.5| Drosophila melanogaster chromosome 2L, section 6 of 83 of the complete
              sequence
          Length = 343161

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    gctgatgacgatggggcagca 211
              |||||||||||||||||||||
Sbjct: 122119 gctgatgacgatggggcagca 122099
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>gb|AC004442.1|AC004442 Drosophila melanogaster, chromosome 2L, region 22A3-22A7, P1 clone
             DS04260, complete sequence
          Length = 80376

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   gctgatgacgatggggcagca 211
             |||||||||||||||||||||
Sbjct: 17171 gctgatgacgatggggcagca 17151
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>ref|XM_363885.1| Magnaporthe grisea 70-15 hypothetical protein (MG01811.4) partial
            mRNA
          Length = 3165

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  ccaagcgctcgccgcggaga 291
            ||||||||||||||||||||
Sbjct: 3067 ccaagcgctcgccgcggaga 3048
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     gctgatgacgatggggcagc 210
               ||||||||||||||||||||
Sbjct: 2617595 gctgatgacgatggggcagc 2617576
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    agatcatccgctgctgcgac 308
              ||||||||||||||||||||
Sbjct: 374050 agatcatccgctgctgcgac 374031
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     cagggtgatcgccgcggtga 327
               ||||||||||||||||||||
Sbjct: 5366125 cagggtgatcgccgcggtga 5366106
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>gb|AY232675.1| Mirabilis jalapa CDC48-like protein mRNA, partial cds
          Length = 669

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 tgctggagctgatgacgatg 203
           ||||||||||||||||||||
Sbjct: 615 tgctggagctgatgacgatg 634
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>gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, region 44C-44D, BAC clone
             BACR14B02, complete sequence
          Length = 194036

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgctggagctgatgacgatg 203
             ||||||||||||||||||||
Sbjct: 72336 tgctggagctgatgacgatg 72355
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 316     tcgccgcggtgaccgcggtcgccg 339
               |||||||||||||||| |||||||
Sbjct: 7603252 tcgccgcggtgaccgccgtcgccg 7603275
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 318     gccgcggtgaccgcggtcgccgcc 341
               |||||| |||||||||||||||||
Sbjct: 6891129 gccgcgatgaccgcggtcgccgcc 6891106
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    ccgcggtgaccgcggtcgccgccg 342
              ||||||||| ||||||||||||||
Sbjct: 188302 ccgcggtgatcgcggtcgccgccg 188279
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>gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the complete genome
          Length = 12549

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  tgatcgccgcggtgaccgcg 332
            ||||||||||||||||||||
Sbjct: 1411 tgatcgccgcggtgaccgcg 1392
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>gb|AE003837.3| Drosophila melanogaster chromosome 2R, section 13 of 73 of the complete
             sequence
          Length = 265215

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgctggagctgatgacgatg 203
             ||||||||||||||||||||
Sbjct: 37893 tgctggagctgatgacgatg 37912
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>gb|AC005449.1|AC005449 Drosophila melanogaster, chromosome 2R, region 44C4-44C5, P1 clone
             DS06765, complete sequence
          Length = 85518

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgctggagctgatgacgatg 203
             ||||||||||||||||||||
Sbjct: 72430 tgctggagctgatgacgatg 72449
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>dbj|D64157.1|AGMPRIIRS1 Cercopithecus aethiops mRNA for IRS-1(COS), complete cds
          Length = 3756

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 175 ccgccgtggtgctggagctgatga 198
           |||||||||||||| |||||||||
Sbjct: 605 ccgccgtggtgctgcagctgatga 628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,885,399
Number of Sequences: 3902068
Number of extensions: 2885399
Number of successful extensions: 58551
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57424
Number of HSP's gapped (non-prelim): 1127
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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