ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast47g04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185139.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1252 Score = 266 bits (134), Expect = 6e-68 Identities = 158/166 (95%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcggaagaagccgccgaagcggacgtggc 319 |||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct: 212 aggagcggctcatccacgagccggcgcggcggcggaagaagccacccaagaggacgtgga 271 Query: 320 gggaggagctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 379 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 gggagaacctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 331 Query: 380 tctccatggcgcccggcaccgactacgtcgacctcatcaccaaggc 425 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 332 tctccatggcgcccggcaccgactacgtcgacctcctcaccaaggc 377 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 40 atgagcttggtctatccactcctgcggctcccatgccgctgc 81 |||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 1 atgagcttggcttatccgctcctccgcctcccatgccgctgc 42
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 266 bits (134), Expect = 6e-68 Identities = 158/166 (95%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcggaagaagccgccgaagcggacgtggc 319 |||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct: 34367672 aggagcggctcatccacgagccggcgcggcggcggaagaagccacccaagaggacgtgga 34367731 Query: 320 gggaggagctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 379 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34367732 gggagaacctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 34367791 Query: 380 tctccatggcgcccggcaccgactacgtcgacctcatcaccaaggc 425 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 34367792 tctccatggcgcccggcaccgactacgtcgacctcctcaccaaggc 34367837 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcgga 295 |||||||||||| ||||||||||||||||||||||| Sbjct: 7338974 aggagcagctcagccacgagccggcgcggcggcgga 7339009 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 40 atgagcttggtctatccactcctgcggctcccatgccgctgc 81 |||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 34367461 atgagcttggcttatccgctcctccgcctcccatgccgctgc 34367502 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 cccggcggcgccgcgggccgccgc 110 ||||||||||||||| |||||||| Sbjct: 15464917 cccggcggcgccgcgagccgccgc 15464894 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 tcggcctcggcctcgttctcgtcg 153 ||||||||||||||| |||||||| Sbjct: 7977747 tcggcctcggcctcgctctcgtcg 7977724
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 266 bits (134), Expect = 6e-68 Identities = 158/166 (95%) Strand = Plus / Minus Query: 260 aggagcagctcatccacgagccggcgcggcggcggaagaagccgccgaagcggacgtggc 319 |||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct: 82022 aggagcggctcatccacgagccggcgcggcggcggaagaagccacccaagaggacgtgga 81963 Query: 320 gggaggagctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 379 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81962 gggagaacctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 81903 Query: 380 tctccatggcgcccggcaccgactacgtcgacctcatcaccaaggc 425 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 81902 tctccatggcgcccggcaccgactacgtcgacctcctcaccaaggc 81857 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Minus Query: 40 atgagcttggtctatccactcctgcggctcccatgccgctgc 81 |||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 82233 atgagcttggcttatccgctcctccgcctcccatgccgctgc 82192
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 266 bits (134), Expect = 6e-68 Identities = 158/166 (95%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcggaagaagccgccgaagcggacgtggc 319 |||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct: 34458144 aggagcggctcatccacgagccggcgcggcggcggaagaagccacccaagaggacgtgga 34458203 Query: 320 gggaggagctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 379 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34458204 gggagaacctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 34458263 Query: 380 tctccatggcgcccggcaccgactacgtcgacctcatcaccaaggc 425 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 34458264 tctccatggcgcccggcaccgactacgtcgacctcctcaccaaggc 34458309 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcgga 295 |||||||||||| ||||||||||||||||||||||| Sbjct: 7336869 aggagcagctcagccacgagccggcgcggcggcgga 7336904 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 40 atgagcttggtctatccactcctgcggctcccatgccgctgc 81 |||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 34457933 atgagcttggcttatccgctcctccgcctcccatgccgctgc 34457974 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 cccggcggcgccgcgggccgccgc 110 ||||||||||||||| |||||||| Sbjct: 15459451 cccggcggcgccgcgagccgccgc 15459428 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 tcggcctcggcctcgttctcgtcg 153 ||||||||||||||| |||||||| Sbjct: 7975582 tcggcctcggcctcgctctcgtcg 7975559
>dbj|AK058472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B11, full insert sequence Length = 1380 Score = 266 bits (134), Expect = 6e-68 Identities = 158/166 (95%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcggaagaagccgccgaagcggacgtggc 319 |||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct: 257 aggagcggctcatccacgagccggcgcggcggcggaagaagccacccaagaggacgtgga 316 Query: 320 gggaggagctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 379 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 gggagaacctcaacctcgacttcctcgccgagcacggcccgcagtggtggctcgtgcgcg 376 Query: 380 tctccatggcgcccggcaccgactacgtcgacctcatcaccaaggc 425 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 377 tctccatggcgcccggcaccgactacgtcgacctcctcaccaaggc 422 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 40 atgagcttggtctatccactcctgcggctcccatgccgctgc 81 |||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 46 atgagcttggcttatccgctcctccgcctcccatgccgctgc 87
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060E18, from chromosome 3, complete sequence Length = 147983 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 260 aggagcagctcatccacgagccggcgcggcggcgga 295 |||||||||||| ||||||||||||||||||||||| Sbjct: 90230 aggagcagctcagccacgagccggcgcggcggcgga 90265
>dbj|AK066563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071G08, full insert sequence Length = 2060 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 260 aggagcagctcatccacgagccggcgcggcggcgga 295 |||||||||||| ||||||||||||||||||||||| Sbjct: 239 aggagcagctcagccacgagccggcgcggcggcgga 204
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 329 tcaacctcgacttcctcgccgagca 353 ||||||||||||||||||||||||| Sbjct: 3849994 tcaacctcgacttcctcgccgagca 3849970
>gb|AE009137.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 163 of 256 of the complete sequence Length = 10086 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 283 gcgcggcggcggaagaagccgccgaa 308 |||| ||||||||||||||||||||| Sbjct: 6241 gcgctgcggcggaagaagccgccgaa 6266
>emb|BX323876.21| Zebrafish DNA sequence from clone CH211-215J19 in linkage group 8, complete sequence Length = 218043 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 363 gtggtggctcgtgcgcgtctcc 384 |||||||||||||||||||||| Sbjct: 169126 gtggtggctcgtgcgcgtctcc 169147
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 actcctgcggctcccatgccgc 78 |||||||||||||||||||||| Sbjct: 3819926 actcctgcggctcccatgccgc 3819947
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 283 gcgcggcggcggaagaagccgccgaa 308 |||| ||||||||||||||||||||| Sbjct: 1809079 gcgctgcggcggaagaagccgccgaa 1809104
>ref|XM_509640.1| PREDICTED: Pan troglodytes similar to Forkhead box protein O1A (Forkhead in rhabdomyosarcoma) (LOC452551), mRNA Length = 1365 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 1125 ctacgccgacctcatcaccaaggcc 1149
>ref|NM_214014.1| Sus scrofa forkhead/winged helix transcription factor FOXO1a (FOXO1A), mRNA Length = 2162 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 545 ctacgccgacctcatcaccaaggcc 569
>ref|XM_594072.2| PREDICTED: Bos taurus similar to Histone H1.4 (Histone H1b) (LOC515957), mRNA Length = 660 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 cgacctcatcaccaaggccgtcgcc 432 |||||||||||||||||| |||||| Sbjct: 150 cgacctcatcaccaaggctgtcgcc 174
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 acctcgacttcctcgccgagc 352 ||||||||||||||||||||| Sbjct: 3308308 acctcgacttcctcgccgagc 3308328 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ctcgacttcctcgccgagcacggc 357 |||||||||||||||| ||||||| Sbjct: 2173430 ctcgacttcctcgccgcgcacggc 2173453 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 tcgacttcctcgccgagcacggcc 358 |||||| ||||||||||||||||| Sbjct: 1944559 tcgactgcctcgccgagcacggcc 1944536
>gb|AY486161.1| Rhodococcus sp. TK6 succinic semialdehyde dehydrogenase (ssd), putative regulator (chnR), 6-hydroxyhexanoate dehydrogenase (chnD), caprolactone hydrolase (chnC), cyclohexanone monooxygenase (chnB), and 6-oxohexanoate dehydrogenase (chnE) genes, complete cds; and protocatechuate dioxygenase (pcd) gene, partial cds Length = 9185 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 ctcccggcggcgccgcgggcc 105 ||||||||||||||||||||| Sbjct: 4246 ctcccggcggcgccgcgggcc 4266
>ref|NM_002015.2| Homo sapiens forkhead box O1A (rhabdomyosarcoma) (FOXO1A), mRNA Length = 5723 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 877 ctacgccgacctcatcaccaaggcc 901
>emb|AL355132.19| Human DNA sequence from clone RP11-181D10 on chromosome 13 Contains a ring finger protein 12 (RNF12) pseudogene, the 5' end of the FOXO1A gene for forkhead box O1A (rhabdomyosarcoma), the 3' end of the MRPS31 gene for mitochondrial ribosomal protein S31 and a CpG island, complete sequence Length = 151261 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 60398 ctacgccgacctcatcaccaaggcc 60374
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 gcgcggcggcggaagaagccg 303 ||||||||||||||||||||| Sbjct: 2948223 gcgcggcggcggaagaagccg 2948203
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 ggcaccgactacgtcgacctc 414 ||||||||||||||||||||| Sbjct: 229812 ggcaccgactacgtcgacctc 229792
>gb|BT007455.1| Homo sapiens forkhead box O1A (rhabdomyosarcoma) mRNA, complete cds Length = 1968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 492 ctacgccgacctcatcaccaaggcc 516
>gb|BC070065.1| Homo sapiens forkhead box O1A (rhabdomyosarcoma), mRNA (cDNA clone IMAGE:30345006), partial cds Length = 2482 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 868 ctacgccgacctcatcaccaaggcc 892
>gb|BC021981.2| Homo sapiens forkhead box O1A (rhabdomyosarcoma), mRNA (cDNA clone MGC:1750 IMAGE:2959021), complete cds Length = 2413 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 805 ctacgccgacctcatcaccaaggcc 829
>gb|AY094061.1| Sus scrofa forkhead/winged helix transcription factor FOXO1a (foxo1a) mRNA, complete cds Length = 2162 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 545 ctacgccgacctcatcaccaaggcc 569
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cggcctcgttctcgtcggcgg 157 ||||||||||||||||||||| Sbjct: 2595837 cggcctcgttctcgtcggcgg 2595817
>gb|AY890174.1| Synthetic construct Homo sapiens clone FLH015809.01X forkhead box O1A (FOXO1A) mRNA, complete cds Length = 1968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 492 ctacgccgacctcatcaccaaggcc 516
>gb|AY890173.1| Synthetic construct Homo sapiens clone FLH015808.01X forkhead box O1A (FOXO1A) mRNA, complete cds Length = 1968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 492 ctacgccgacctcatcaccaaggcc 516
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 tctctgtcggcctcggcctcgttct 148 |||| |||||||||||||||||||| Sbjct: 928441 tctcggtcggcctcggcctcgttct 928465
>gb|AF032885.1|AF032885 Homo sapiens forkhead protein (FKHR) mRNA, complete cds Length = 5723 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 877 ctacgccgacctcatcaccaaggcc 901
>gb|U89510.1|HVU89510 Hordeum vulgare b-keto acyl reductase (glossy8) mRNA, complete cds Length = 1138 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 cggcctcggcctcgttctcgtcggc 155 ||||||||||||||| ||||||||| Sbjct: 295 cggcctcggcctcgtgctcgtcggc 319
>gb|U02310.1|HSU02310 Human fork head domain protein (FKHR) mRNA, complete cds Length = 3421 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 ctacgtcgacctcatcaccaaggcc 426 ||||| ||||||||||||||||||| Sbjct: 498 ctacgccgacctcatcaccaaggcc 522
>ref|XM_470971.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2598 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 193 cggcgcggcggcggaagaag 174
>ref|XM_463821.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 207 cggcgcggcggcggaagaag 188
>gb|AC104932.22| Mus musculus chromosome 3, clone RP24-337A16, complete sequence Length = 184718 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 117039 tacgccgacctcatcaccaaggcc 117062
>ref|XM_470802.1| Oryza sativa (japonica cultivar-group), mRNA Length = 663 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 cccggcggcgccgcgggccgccgc 110 ||||||||||||||| |||||||| Sbjct: 192 cccggcggcgccgcgagccgccgc 169
>ref|XM_362310.1| Magnaporthe grisea 70-15 hypothetical protein (MG04755.4) partial cds Length = 2628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ggagctcaacctcgacttcc 343 |||||||||||||||||||| Sbjct: 492 ggagctcaacctcgacttcc 511
>ref|NM_019739.2| Mus musculus forkhead box O1 (Foxo1), mRNA Length = 4945 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 912 tacgccgacctcatcaccaaggcc 935
>gb|AC163092.4| Mus musculus chromosome 3, clone RP24-212F17, complete sequence Length = 150636 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 9630 tacgccgacctcatcaccaaggcc 9653
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 cccggcggcgccgcgggccgccgc 110 ||||||||||||||| |||||||| Sbjct: 36609 cccggcggcgccgcgagccgccgc 36632
>gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperoxide lyase (HPL1) gene, complete cds Length = 1731 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 220 cggcgcggcggcggaagaag 201
>gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence Length = 1472 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tcgacttcctcgccgagcac 354 |||||||||||||||||||| Sbjct: 302 tcgacttcctcgccgagcac 321
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 gcgcccggcaccgactacgtcgacctca 415 ||||||||||||| | |||||||||||| Sbjct: 98551 gcgcccggcaccgtcgacgtcgacctca 98578
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 107926 cggcgcggcggcggaagaag 107907
>emb|AJ252157.1|MMU252157 Mus musculus mRNA for forkhead protein FKHR (Fkhr gene) Length = 4945 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 912 tacgccgacctcatcaccaaggcc 935
>gb|AC099689.4| Homo sapiens chromosome 18, clone RP11-849I19, complete sequence Length = 201519 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tgtctctgtcggcctcggcc 141 |||||||||||||||||||| Sbjct: 63986 tgtctctgtcggcctcggcc 63967
>gb|AC087694.3| Homo sapiens chromosome 8, clone RP11-55M17, complete sequence Length = 152818 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gctgggagcaatgagcttgg 49 |||||||||||||||||||| Sbjct: 124672 gctgggagcaatgagcttgg 124653
>dbj|AK154041.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430027H20 product:forkhead box O1, full insert sequence Length = 2532 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 950 tacgccgacctcatcaccaaggcc 973
>dbj|AK137629.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930001F21 product:forkhead box O1, full insert sequence Length = 3185 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 897 tacgccgacctcatcaccaaggcc 920
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ggcgcggcggcggaagaagc 301 |||||||||||||||||||| Sbjct: 845455 ggcgcggcggcggaagaagc 845474
>gb|AF114258.1|AF114258 Mus musculus forkhead protein FKHR1 (Fkhr1) mRNA, complete cds Length = 2460 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 867 tacgccgacctcatcaccaaggcc 890
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cgcgggccgccgcagcgtcg 117 |||||||||||||||||||| Sbjct: 140939 cgcgggccgccgcagcgtcg 140920
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 312106 cggcgcggcggcggaagaag 312087
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgagccggcgcggcggcgga 295 |||||||||||||||||||| Sbjct: 20448781 cgagccggcgcggcggcgga 20448762
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 554785 cggcgcggcggcggaagaag 554766
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 tcggcctcggcctcgttctcgtcg 153 ||||||||||||||| |||||||| Sbjct: 45110 tcggcctcggcctcgctctcgtcg 45087
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 acctcgacttcctcgccgag 351 |||||||||||||||||||| Sbjct: 8143606 acctcgacttcctcgccgag 8143625 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 cctcgccgagcacggcccgcagtg 365 ||||||||||||| |||||||||| Sbjct: 907354 cctcgccgagcaccgcccgcagtg 907377
>gb|AC171016.2| Gallus gallus BAC clone CH261-29C12 from chromosome ul, complete sequence Length = 168140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ccggcggcgccgcgggccgc 107 |||||||||||||||||||| Sbjct: 162608 ccggcggcgccgcgggccgc 162627
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 cggcggcgccgcgggccgccgcag 112 |||||||||||| ||||||||||| Sbjct: 3375316 cggcggcgccgccggccgccgcag 3375339
>ref|XM_342244.2| PREDICTED: Rattus norvegicus forkhead box O1A (Foxo1a), mRNA Length = 4171 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 894 tacgccgacctcatcaccaaggcc 917
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 32838 cggcgcggcggcggaagaag 32819
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tggaggagcagctcatccac 276 |||||||||||||||||||| Sbjct: 2757048 tggaggagcagctcatccac 2757029
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgagccggcgcggcggcgga 295 |||||||||||||||||||| Sbjct: 76920 cgagccggcgcggcggcgga 76901
>dbj|AK121655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061N09, full insert sequence Length = 1339 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgagccggcgcggcggcgga 295 |||||||||||||||||||| Sbjct: 51 cgagccggcgcggcggcgga 32
>dbj|AK120156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030B09, full insert sequence Length = 3151 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 288 cggcgcggcggcggaagaag 269
>dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C08, full insert sequence Length = 1742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 207 cggcgcggcggcggaagaag 188
>dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140G07, full insert sequence Length = 1646 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 cggcgcggcggcggaagaag 300 |||||||||||||||||||| Sbjct: 150 cggcgcggcggcggaagaag 131
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 catcaccaaggccgtcgccc 433 |||||||||||||||||||| Sbjct: 3527736 catcaccaaggccgtcgccc 3527717
>dbj|AK067333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O03, full insert sequence Length = 3359 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 tcggcctcggcctcgttctcgtcg 153 ||||||||||||||| |||||||| Sbjct: 1427 tcggcctcggcctcgctctcgtcg 1450
>gb|AF126056.1|AF126056 Mus musculus forkhead protein FKHR (Fkhr) mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 tacgtcgacctcatcaccaaggcc 426 |||| ||||||||||||||||||| Sbjct: 490 tacgccgacctcatcaccaaggcc 513
>gb|AY772007.1| Nocardioides sp. JS614 putative PAPS reductase gene, partial cds; putative argininosuccinate lyase, putative 1-aminocyclopropane-1-carboxylate deaminase, putative adenylosuccinate lyase, putative phosphosulfolactate synthase, putative oxidoreductase/dehydrogenase, putative short-chain dehydrogenase, putative acyl-CoA transferase, putative acyl-CoA synthetase, epoxyalkane: coenzyme M transferase (etnE), probable alkene monooxygenase beta subunit (etnA), probable alkene monooxygenase effector (etnB), probable alkene monooxygenase alpha subunit (etnC), probable alkene monooxygenase reductase, hypothetical proteins, putative dimethylsulfoxide reductase, hypothetical protein, putative TraA conjugation protein, hypothetical protein, putative ParB partitioning protein, and hypothetical proteins genes, complete cds; putative DNA integrase/recombinase gene, partial cds; and unknown gene Length = 34814 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 130 tcggcctcggcctcgttctcgtcggcgg 157 ||||||||||||||| ||||| |||||| Sbjct: 30453 tcggcctcggcctcggtctcggcggcgg 30480
>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene cluster, strain NRRL 3061 Length = 105657 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 gcccggcaccgactacgtcgacct 413 ||||||||||| |||||||||||| Sbjct: 72975 gcccggcaccgcctacgtcgacct 72952
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 agctcatccacgagccggcgcggc 289 |||||||||||||||| ||||||| Sbjct: 1296341 agctcatccacgagcccgcgcggc 1296318
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggcggcggaagaagccgccg 306 |||||||||||||||||||| Sbjct: 5327591 ggcggcggaagaagccgccg 5327572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,543,818 Number of Sequences: 3902068 Number of extensions: 2543818 Number of successful extensions: 66069 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63216 Number of HSP's gapped (non-prelim): 2853 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
