ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORAI1_MOUSE (Q8BWG9) Protein orai-1 29 3.0
2BIOD_BACNA (Q8KZM8) Dethiobiotin synthetase (EC 6.3.3.3) (Dethio... 28 4.0
3HMP_BORPE (Q7TTP0) Flavohemoprotein (Hemoglobin-like protein) (F... 28 6.8
4HMP_BORPA (Q7TTP2) Flavohemoprotein (Hemoglobin-like protein) (F... 28 6.8
5HMP_BORBR (Q7WHW5) Flavohemoprotein (Hemoglobin-like protein) (F... 28 6.8
6LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related pro... 28 6.8
7PSIE_BACC1 (Q72Y02) Protein psiE homolog 27 8.8
8PSIE_BACHK (Q6HBH8) Protein psiE homolog 27 8.8
9PSIE_BACAN (Q81XB6) Protein psiE homolog 27 8.8
10TYRT_STRAT (P17687) Tyrosinase cofactor (ORF438) 27 8.8
11RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine syntha... 27 8.8

>ORAI1_MOUSE (Q8BWG9) Protein orai-1|
          Length = 304

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 269 SRTDCRKSGRRRDGDGELARSPALAPAGGVLSSMDMVPRS 150
           S T   +  RRR GDGE + +P L P    +S  D + +S
Sbjct: 22  SSTSGSRRSRRRSGDGEPSGAPPLPPPPPAVSYPDWIGQS 61



to top

>BIOD_BACNA (Q8KZM8) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin|
           synthase) (DTB synthetase) (DTBS)
          Length = 231

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 277 VKLGYHYLITHGMYLLLTPLIVLIAVHLSTLS 372
           V LG  YL++H +  L  P+I++   HL T++
Sbjct: 119 VPLGEDYLVSHVIKALQLPMIIVARPHLGTIN 150



to top

>HMP_BORPE (Q7TTP0) Flavohemoprotein (Hemoglobin-like protein)|
           (Flavohemoglobin) (Nitric oxide dioxygenase) (EC
           1.14.12.17) (NO oxygenase) (NOD)
          Length = 402

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 408 AEVRPQVCDVARRERGEVD---GDEHDEWGQQEVHAVGDEVVVP 286
           A  RP V      ER   D   G ++D  G+ ++HA+ DEV++P
Sbjct: 318 AAKRPNVRKAVFYERVGADDRRGVDYDYEGRVDLHAIRDEVILP 361



to top

>HMP_BORPA (Q7TTP2) Flavohemoprotein (Hemoglobin-like protein)|
           (Flavohemoglobin) (Nitric oxide dioxygenase) (EC
           1.14.12.17) (NO oxygenase) (NOD)
          Length = 402

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 408 AEVRPQVCDVARRERGEVD---GDEHDEWGQQEVHAVGDEVVVP 286
           A  RP V      ER   D   G ++D  G+ ++HA+ DEV++P
Sbjct: 318 AAKRPNVRKAVFYERVGADDRRGVDYDYEGRVDLHAIRDEVILP 361



to top

>HMP_BORBR (Q7WHW5) Flavohemoprotein (Hemoglobin-like protein)|
           (Flavohemoglobin) (Nitric oxide dioxygenase) (EC
           1.14.12.17) (NO oxygenase) (NOD)
          Length = 402

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 408 AEVRPQVCDVARRERGEVD---GDEHDEWGQQEVHAVGDEVVVP 286
           A  RP V      ER   D   G ++D  G+ ++HA+ DEV++P
Sbjct: 318 AAKRPNVRKAVFYERVGADDRRGVDYDYEGRVDLHAIRDEVILP 361



to top

>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5 precursor|
            (LRP7) (Lr3)
          Length = 1614

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
 Frame = -1

Query: 344  STMSGVSRRYMPWVMR*WYPSLTYLSRTDCRKSGRRRDGDGELAR--------------- 210
            S +   +R Y P+V+R   P  T  S   C       D D  ++R               
Sbjct: 1518 SGIPATARPYRPYVIRGMAPPTTPCSTDVC-------DSDYSISRWKSSKYYLDLNSDSD 1570

Query: 209  --SPALAPAGGVLSSMDMVPRSNGRSDDQCHRTPP 111
               P   P    LS+ D  P S G     CH  PP
Sbjct: 1571 PYPPPPTPHSQYLSAEDSCPPSPGTERSYCHLFPP 1605



to top

>PSIE_BACC1 (Q72Y02) Protein psiE homolog|
          Length = 133

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 268 LKYVKLGYHYLITHGMYLLLTPLIVLIAV 354
           +KY K  YH+ + + +Y+ +T LI LI V
Sbjct: 72  IKYFKSNYHFPLRYFIYIGITALIRLIIV 100



to top

>PSIE_BACHK (Q6HBH8) Protein psiE homolog|
          Length = 134

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 268 LKYVKLGYHYLITHGMYLLLTPLIVLIAV 354
           +KY K  YH+ + + +Y+ +T LI LI V
Sbjct: 73  IKYFKSNYHFPLRYFIYIGITALIRLIIV 101



to top

>PSIE_BACAN (Q81XB6) Protein psiE homolog|
          Length = 134

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 268 LKYVKLGYHYLITHGMYLLLTPLIVLIAV 354
           +KY K  YH+ + + +Y+ +T LI LI V
Sbjct: 73  IKYFKSNYHFPLRYFIYIGITALIRLIIV 101



to top

>TYRT_STRAT (P17687) Tyrosinase cofactor (ORF438)|
          Length = 146

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 221 ELARSPALAPAGGVLSSMDMVPRSNGRSDDQCHRTP 114
           EL R  AL  A  V + + +V     R+DD+ H TP
Sbjct: 3   ELTRRRALGAAAVVAAGVPLVALPAARADDRGHHTP 38



to top

>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 386

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 254 RKSGRRRDGDGELARSPALAPAGGVLSSMDMVPRSNG 144
           +++ RR DG+    R+PA  PA G   S +   R  G
Sbjct: 294 KRAPRREDGENAARRAPASRPARGPQPSAERKGREQG 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,180,456
Number of Sequences: 219361
Number of extensions: 623449
Number of successful extensions: 1899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top