ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 59 3e-12
2FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 pre... 40 0.002
3FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 31 0.005
4FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 28 0.017

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 59.3 bits (142), Expect(2) = 3e-12
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +1

Query: 298 DGGVTAFCPSDDAARSFMPRYKNLTADGKASLLLFHAVPVYYA 426
           +GG+T FCP DDA + F+P+YKNLTA  K + L F AVP YY+
Sbjct: 218 EGGMTVFCPGDDAMKGFLPKYKNLTAPKKEAFLDFLAVPTYYS 260



 Score = 30.4 bits (67), Expect(2) = 3e-12
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 NITAAMAKGGCKAFAALVAASPDAHSTFQSA 293
           N+T  M+  GCK FA  +  +P A  T+Q +
Sbjct: 186 NLTGIMSAHGCKVFAETLLTNPGASKTYQES 216



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>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 304 GVTAFCPSDDAARSFM-PRYKNLTADGKASLLLFHAVPVYYA 426
           G+T F P DDA ++   P   NLT D    L+LFHA+P YY+
Sbjct: 83  GITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYS 124



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 30.8 bits (68), Expect(2) = 0.005
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 304 GVTAFCPSDDAARS-FMPRYKNLTADGKASLLLFHAVPVY 420
           G+T F PSD+A ++  +P   NLT     SLL +HA+  Y
Sbjct: 223 GLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEY 262



 Score = 27.3 bits (59), Expect(2) = 0.005
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 201 NITAAMAKGGCKAFAALVAASPDAHSTFQS 290
           NIT  + K GCK FA L+ +S     TF+S
Sbjct: 190 NITGLLEKAGCKTFANLLVSS-GVIKTFES 218



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 28.5 bits (62), Expect(2) = 0.017
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 304 GVTAFCPSDDAARS-FMPRYKNLTADGKASLLLFHAVPVY 420
           G+T F PSD+A ++  +P    LT     SLL +HA+  Y
Sbjct: 222 GLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261



 Score = 27.7 bits (60), Expect(2) = 0.017
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 NITAAMAKGGCKAFAALVAASPDAHSTFQSA 293
           NIT  + K GCK FA L+ +S     T++SA
Sbjct: 189 NITGLLEKAGCKTFANLLVSS-GVLKTYESA 218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,222,863
Number of Sequences: 219361
Number of extensions: 504216
Number of successful extensions: 1918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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