>SCW4_YEAST (P53334) Probable family 17 glucosidase SCW4 precursor (EC 3.2.1.-)|
           (Soluble cell wall protein 4)
          Length = 386

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 183 SCVANSCPLARSSTTCSYGAMAIDRSKHEHVNS------SSLLLHLARTAQHSTAPQSSK 22
           + V NS P A +STT S  ++A   +     NS      S      A + Q S++ Q+S 
Sbjct: 59  NAVVNSAPAAATSTTSSAASVATAAASSSENNSQVSAAASPASSSAATSTQSSSSSQASS 118

Query: 21  ARAEGE 4
           + + GE
Sbjct: 119 SSSSGE 124

>WRK54_ARATH (Q93WU8) Probable WRKY transcription factor 54 (WRKY DNA-binding|
           protein 54)
          Length = 346

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 137 QVVDDLAKGQEFATQLQGLL 196
           +VVD L +G EFATQLQ LL
Sbjct: 14  KVVDQLVEGYEFATQLQLLL 33

>GAGC_AVISC (P05433) P47(GAG-CRK) protein|
          Length = 440

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 327 QPAAGRGSPPPVEGRARPAGRGPIIRP 407
           QP AGRG+     G  RPAGRG  +RP
Sbjct: 205 QPRAGRGAGH--RGLRRPAGRGQRVRP 229

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 339 GRGSPPPVEGRARPAGRG 392
           GRG+PPP  GR  P  RG
Sbjct: 508 GRGAPPPPRGRGAPPPRG 525

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 333 AAGRGSPPPVEGRARPAGRGP 395
           A G    PP  GRARP G GP
Sbjct: 82  APGAAPEPPPAGRARPGGGGP 102

>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)|
           (YANK3)
          Length = 486

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +3

Query: 333 AAGRGSPPPVEGRARPAG 386
           AA  GSPPP  GRARPAG
Sbjct: 13  AASPGSPPP--GRARPAG 28

>KCNN1_RAT (P70606) Small conductance calcium-activated potassium channel|
           protein 1 (SK1)
          Length = 536

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 109 IQARARELELTPAPPSSHSTAQHSTTEQQGEGRGGA 2
           + A+ +   L+P+ P  HS AQ    E++ E R G+
Sbjct: 44  MMAKGQPAGLSPSGPRGHSQAQEEEEEEEDEDRPGS 79

>KCNH6_HUMAN (Q9H252) Potassium voltage-gated channel subfamily H member 6|
            (Voltage-gated potassium channel subunit Kv11.2)
            (Ether-a-go-go-related gene potassium channel 2)
            (Ether-a-go-go-related protein 2) (Eag-related protein 2)
          Length = 994

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 141  TCSYGAMAIDRSKHEHVNSSSLLLHLARTAQHSTAPQSSKARAEG 7
            T SYG +  D    +H NSS  + HLA     + AP S + + EG
Sbjct: 898  TPSYGDL--DDCSPKHRNSSPRMPHLAVATDKTLAPSSEQEQPEG 940

>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1
           homolog) (hPrt1)
          Length = 814

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 327 QPAAGRGSPPPVEGRARPAGRG 392
           QPAA    PPP EG  RPAG G
Sbjct: 23  QPAA---EPPPAEGLLRPAGPG 41

>FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 615

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -2

Query: 213 ALGESRRRPCSCVANSCPLARSSTTCSYGAMAIDRSKHEHVNSSSLLLHLARTAQHSTAP 34
           ALGES         +S     SSTT + G  AI+    +  + +  L  L     H T  
Sbjct: 533 ALGESGSSSSKTSTHSKQFVSSSTTVNRGGSAIESKHFKMEDEAESLEDLGFKGAHGTQK 592

Query: 33  QSSKAR 16
             +KAR
Sbjct: 593 GHTKAR 598

>ARGJ_PELCD (Q3A246) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 393

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 QVVDDLAKGQEFATQLQGLLRDSPK 211
           ++V D A+GQEFA  L+G+L D  K
Sbjct: 234 EIVADSAEGQEFAELLRGVLLDLAK 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,986,207
Number of Sequences: 219361
Number of extensions: 361941
Number of successful extensions: 1888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)