>gb|AY792974.1| Triticum aestivum meiosis 5 (M5) mRNA, complete cds
          Length = 1248

 Score =  373 bits (188), Expect = e-100
 Identities = 259/282 (91%), Gaps = 3/282 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcaagccaagatgacgtgaagaagccggactgcgtgccgtccctcgacccgcacaac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 151 aaggcaagccaagatgacgtgaagaagccggactgcgtgccgtcgctcgacccgcacaac 210

                                                                       
Query: 61  ttccccggccacggcggcaccaccgtgccgcttccttcgcacggaggctcatccggcacc 120
           |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| 
Sbjct: 211 ttccccggccacgggggcaccaccgtgccgcttccctcgcacggaggctcctccggcacg 270

                                                                       
Query: 121 ccgccttaccacggaggctccggcaccacgccgtcgcacggcggctccggctcgactccc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 271 ccgccttaccacggaggctccggcactacgccgtcgcacggcggctccggctcgactccg 330

                                                                       
Query: 181 tcgcacagcggctccgggt---cggtgcctgacccgtcgcacggcggttccggctcgact 237
           |||||||||||||||||||   ||||||||||||||||||| ||||| | |||  || | 
Sbjct: 331 tcgcacagcggctccgggtcgacggtgcctgacccgtcgcatggcggatacgggacgccg 390

                                                     
Query: 238 ccctcgcacagtggctccgggtcggtgcctgacccgtcgcac 279
           || |||||| | ||||| || ||| |||||||||||||||||
Sbjct: 391 ccttcgcacggcggctctggttcgctgcctgacccgtcgcac 432



 Score =  256 bits (129), Expect = 5e-65
 Identities = 162/173 (93%)
 Strand = Plus / Plus

                                                                       
Query: 274 tcgcacgggggctctggttcgttgcctgacccgtcgcacagcggaggaggttacgggtcc 333
           |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 394 tcgcacggcggctctggttcgctgcctgacccgtcgcacagcggaggaggttacggatcc 453

                                                                       
Query: 334 actccggatgcgccgtcacacagcggaggcgcctacgggagctccccgacgccttccact 393
           |||||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 454 actccggacgcgccatcccacggcggaggcgcgtacgggagctccccgacgccttccact 513

                                                                
Query: 394 ggcggtgcctacggcagctcacctacgccgtcccacgacggaggcgcatacgg 446
           ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 514 ggcggtgcctacggcagctcacccacgccgtcccacgacgggggcgcctacgg 566



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 344 cgccgtcacacagcggaggcgcctacgggagctccccgacgcc 386
           ||||||| |||  ||| ||||||||||||||||||||||||||
Sbjct: 539 cgccgtcccacgacgggggcgcctacgggagctccccgacgcc 581



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 181 tcgcacagcggctccgggtcggtgcctgacccgtcgcacggcgg 224
           |||||| ||||||| || ||| ||||||||||||||||| ||||
Sbjct: 394 tcgcacggcggctctggttcgctgcctgacccgtcgcacagcgg 437



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 400 gcctacggcagctcacctacgccgtcccacgacggaggc 438
           |||||||| ||||| || |||||| ||||||||||||||
Sbjct: 559 gcctacgggagctccccgacgccggcccacgacggaggc 597

>ref|NM_188299.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                        
Query: 22   aagaagccggactgcgtgccgtccctcgacccgcacaacttccccggccacggcggcacc 81
            ||||||||||||||||||||| |  ||||||||| |   |||||||||||||||||||||
Sbjct: 1048 aagaagccggactgcgtgccggcgttcgacccgcgctcgttccccggccacggcggcacc 1107

              
Query: 82   ac 83
            ||
Sbjct: 1108 ac 1109



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 139  tccggcaccacgccgtcgcacggcggc 165
            ||||| |||||||||||||||||||||
Sbjct: 1153 tccgggaccacgccgtcgcacggcggc 1179



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 343  gcgccgtcacacagcggaggcgcctacgggagctcccc 380
            |||||||| ||| | || ||||||||||||||||||||
Sbjct: 1306 gcgccgtcccacggtggcggcgcctacgggagctcccc 1343

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 22      aagaagccggactgcgtgccgtccctcgacccgcacaacttccccggccacggcggcacc 81
               ||||||||||||||||||||| |  ||||||||| |   |||||||||||||||||||||
Sbjct: 5549757 aagaagccggactgcgtgccggcgttcgacccgcgctcgttccccggccacggcggcacc 5549698

                 
Query: 82      ac 83
               ||
Sbjct: 5549697 ac 5549696



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 139     tccggcaccacgccgtcgcacggcggc 165
               ||||| |||||||||||||||||||||
Sbjct: 5549652 tccgggaccacgccgtcgcacggcggc 5549626



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 343     gcgccgtcacacagcggaggcgcctacgggagctcccc 380
               |||||||| ||| | || ||||||||||||||||||||
Sbjct: 5549499 gcgccgtcccacggtggcggcgcctacgggagctcccc 5549462

>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1015E06
          Length = 164583

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 22     aagaagccggactgcgtgccgtccctcgacccgcacaacttccccggccacggcggcacc 81
              ||||||||||||||||||||| |  ||||||||| |   |||||||||||||||||||||
Sbjct: 146597 aagaagccggactgcgtgccggcgttcgacccgcgctcgttccccggccacggcggcacc 146538

                
Query: 82     ac 83
              ||
Sbjct: 146537 ac 146536



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 139    tccggcaccacgccgtcgcacggcggc 165
              ||||| |||||||||||||||||||||
Sbjct: 146492 tccgggaccacgccgtcgcacggcggc 146466



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 343    gcgccgtcacacagcggaggcgcctacgggagctcccc 380
              |||||||| ||| | || ||||||||||||||||||||
Sbjct: 146339 gcgccgtcccacggtggcggcgcctacgggagctcccc 146302

>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489A05
          Length = 158815

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 22    aagaagccggactgcgtgccgtccctcgacccgcacaacttccccggccacggcggcacc 81
             ||||||||||||||||||||| |  ||||||||| |   |||||||||||||||||||||
Sbjct: 15230 aagaagccggactgcgtgccggcgttcgacccgcgctcgttccccggccacggcggcacc 15171

               
Query: 82    ac 83
             ||
Sbjct: 15170 ac 15169



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 139   tccggcaccacgccgtcgcacggcggc 165
             ||||| |||||||||||||||||||||
Sbjct: 15125 tccgggaccacgccgtcgcacggcggc 15099



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 343   gcgccgtcacacagcggaggcgcctacgggagctcccc 380
             |||||||| ||| | || ||||||||||||||||||||
Sbjct: 14972 gcgccgtcccacggtggcggcgcctacgggagctcccc 14935

>dbj|AK073568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042J01, full
           insert sequence
          Length = 1185

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 22  aagaagccggactgcgtgccgtccctcgacccgcacaacttccccggccacggcggcacc 81
           ||||||||||||||||||||| |  ||||||||| |   |||||||||||||||||||||
Sbjct: 170 aagaagccggactgcgtgccggcgttcgacccgcgctcgttccccggccacggcggcacc 229

             
Query: 82  ac 83
           ||
Sbjct: 230 ac 231



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 139 tccggcaccacgccgtcgcacggcggc 165
           ||||| |||||||||||||||||||||
Sbjct: 275 tccgggaccacgccgtcgcacggcggc 301



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 343 gcgccgtcacacagcggaggcgcctacgggagctcccc 380
           |||||||| ||| | || ||||||||||||||||||||
Sbjct: 428 gcgccgtcccacggtggcggcgcctacgggagctcccc 465

>gb|AY107448.1| Zea mays PCO089586 mRNA sequence
          Length = 549

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 16  gacgtgaagaagccggactgcgtgccg 42
           |||||||||||||||||||||||||||
Sbjct: 213 gacgtgaagaagccggactgcgtgccg 239

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 153     gtcgcacggcggctccggctcg 174
               ||||||||||||||||||||||
Sbjct: 1202065 gtcgcacggcggctccggctcg 1202086

>emb|BX324001.6| Zebrafish DNA sequence from clone CH211-209D21 in linkage group 2,
             complete sequence
          Length = 147684

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     ggcaagccaagatgacgtgaa 23
             |||||||||||||||||||||
Sbjct: 19702 ggcaagccaagatgacgtgaa 19682

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      cggcggcaccaccgtgccgct 92
               |||||||||||||||||||||
Sbjct: 6573287 cggcggcaccaccgtgccgct 6573307

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     acttccccggccacggcggc 78
              ||||||||||||||||||||
Sbjct: 386930 acttccccggccacggcggc 386949

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     caacttccccggccacggcg 76
              ||||||||||||||||||||
Sbjct: 234694 caacttccccggccacggcg 234713

>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence
          Length = 357655

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    cacgccgtcgcacggcggct 166
              ||||||||||||||||||||
Sbjct: 140066 cacgccgtcgcacggcggct 140085

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    acttccccggccacggcggc 78
             ||||||||||||||||||||
Sbjct: 44963 acttccccggccacggcggc 44982

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    acttccccggccacggcggc 78
             ||||||||||||||||||||
Sbjct: 44900 acttccccggccacggcggc 44919

>emb|BX470243.12| Zebrafish DNA sequence from clone CH211-79J19 in linkage group 16,
              complete sequence
          Length = 191645

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      ggcaagccaagatgacgtga 22
              ||||||||||||||||||||
Sbjct: 155212 ggcaagccaagatgacgtga 155193

>emb|BX324207.7| Zebrafish DNA sequence from clone DKEY-11F7 in linkage group 16, complete
              sequence
          Length = 251037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      ggcaagccaagatgacgtga 22
              ||||||||||||||||||||
Sbjct: 113851 ggcaagccaagatgacgtga 113832

>gb|U91845.1|MBU91845 Mycobacterium bovis tRNA-Gly gene, complete sequence, and
           pyrrolidone carboxyl peptidase (pcp) gene, complete cds
          Length = 1810

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  acttccccggccacggcggc 78
           ||||||||||||||||||||
Sbjct: 714 acttccccggccacggcggc 733

>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin
             biosynthetic gene cluster, complete sequence
          Length = 95700

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    tccccggccacggcggcaccaccg 85
             ||||||||||| ||||||||||||
Sbjct: 53886 tccccggccaccgcggcaccaccg 53863

>ref|XM_320523.2| Anopheles gambiae str. PEST ENSANGP00000008665 (ENSANGG00000006524),
            partial mRNA
          Length = 5853

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   gatgacgtgaagaagccgga 32
            ||||||||||||||||||||
Sbjct: 5029 gatgacgtgaagaagccgga 5048

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      tgccgtccctcgacccgcac 57
               ||||||||||||||||||||
Sbjct: 1899320 tgccgtccctcgacccgcac 1899339

>emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 in linkage group 18,
             complete sequence
          Length = 167305

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ggcaagccaagatgacgtga 22
             ||||||||||||||||||||
Sbjct: 39845 ggcaagccaagatgacgtga 39864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,750,652
Number of Sequences: 3902068
Number of extensions: 1750652
Number of successful extensions: 31142
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30722
Number of HSP's gapped (non-prelim): 415
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)