Clone Information

BLAST Search Result

Clone Name	bast47e01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)	33	0.13
2	BFSP1_BOVIN (Q06002) Filensin (Beaded filament structural protei...	31	0.62
3	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	30	1.1
4	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	30	1.4
5	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	30	1.4
6	BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2....	30	1.8
7	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	30	1.8
8	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	29	2.4
9	LAS17_YEAST (Q12446) Proline-rich protein LAS17	29	2.4
10	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	29	2.4
11	HAPIP_RAT (P97924) Huntingtin-associated protein-interacting pro...	29	2.4
12	YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I	29	3.1
13	LORI_HUMAN (P23490) Loricrin	29	3.1
14	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	29	3.1
15	GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; ...	29	3.1
16	FMN2_MOUSE (Q9JL04) Formin-2	28	4.0
17	ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha sub...	28	4.0
18	FTSK_CHLMU (Q9PLI7) DNA translocase ftsK	28	4.0
19	CAPU_DROME (Q24120) Protein cappuccino	28	4.0
20	ITIH4_HUMAN (Q14624) Inter-alpha-trypsin inhibitor heavy chain H...	28	5.3
21	Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)	28	5.3
22	PLCG1_BOVIN (P08487) 1-phosphatidylinositol-4,5-bisphosphate pho...	28	5.3
23	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	28	6.9
24	MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p...	28	6.9
25	FOXJ2_HUMAN (Q9P0K8) Forkhead box protein J2 (Fork head homologo...	28	6.9
26	POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps...	28	6.9
27	CHB4_ANTPO (P02847) Chorion class B protein PC401 precursor (Fra...	28	6.9
28	PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior...	28	6.9
29	POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocaps...	28	6.9
30	POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps...	28	6.9
31	POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocaps...	28	6.9
32	DBP_HUMAN (Q10586) D site-binding protein (Albumin D box-binding...	28	6.9
33	GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Co...	27	9.0
34	Y104_ENCCU (Q8STF2) Hypothetical protein ECU01_0040/ECU01_1570/E...	27	9.0
35	MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.1...	27	9.0
36	ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc...	27	9.0
37	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	27	9.0
38	EX7L_NEIMB (Q9JYZ2) Probable exodeoxyribonuclease VII large subu...	27	9.0
39	ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (L...	27	9.0
40	MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.1...	27	9.0
41	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	27	9.0

>GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)|
          Length = 1502

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -3

Query: 320  PPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATP 162
            P R   + D+P QE  R    P  PTE   A   +P+L  R TE+N+  +  P
Sbjct: 1391 PSRDEPSRDEPSQEAERAPSQPPSPTEERNAPVSLPELTRRLTEANERIAEFP 1443

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>BFSP1_BOVIN (Q06002) Filensin (Beaded filament structural protein 1)|
          Length = 756

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAP 222
           P+QP PP  +E G  PPQE    L    GP E  G  P
Sbjct: 512 PQQPEPP--LEEGQGPPQEKEDGLKEEGGPPEGKGEPP 547

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>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +1

Query: 217 TSGAAPEHSVGPFGGI---SVRITSCGGSSPASTSRGGWGCLGSS 342
           +S +A   S+GP+GG+   +  +++ GG + A++S   +G  GSS
Sbjct: 293 SSQSAAASSLGPYGGVQPSASALSTYGGQAAAASSLNSYGAQGSS 337

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>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 217 TSGAAPEHSVGPFGGI---SVRITSCGGSSPASTSRGGWGCLGSS 342
           +S +A   S+GP+GG    +  ++S GG + A++S   +G  GSS
Sbjct: 293 SSQSAAASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSS 337

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>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 217 TSGAAPEHSVGPFGGI---SVRITSCGGSSPASTSRGGWGCLGSS 342
           +S +A   S+GP+GG    +  ++S GG + A++S   +G  GSS
Sbjct: 293 SSQSAAASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSS 337

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>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -3

Query: 317 PRLVEAGDDPPQEVMRT--LIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLPLEGG 144
           PR   AG+ PP    R+  L  P G    SG  PL   L   R     +   TP P  GG
Sbjct: 499 PRGGGAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPGG 558

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/67 (31%), Positives = 25/67 (37%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P PPR   AG  P     R+  PP  P          P L + R  SN    A P  
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP--PAPPPA 394

Query: 155 LEGGNGP 135
           + G + P
Sbjct: 395 IPGRSAP 401

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 299 GDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNR----RTESNKSWSATPL--PLEGGNG 138
           G   PQ+VMR   P   PT  SG+  + P +       R  SN+S S  P+  P  G  G
Sbjct: 501 GTPNPQQVMR---PTPSPTGSSGSRSMSPAVAQNHPISRPASNQSSSGGPMQQPPVGAGG 557

Query: 137 P 135
           P
Sbjct: 558 P 558

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>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P PP         PQ      IPP  P+  S A P  P  + ++ +S  + +  P P
Sbjct: 467 PVAPPPPPASLGQSQIPQSAPSAPIPPTLPSTTSAAPPPPPAFLTQQPQSGGAPAPPPPP 526

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>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 217 TSGAAPEHSVGPFGGI---SVRITSCGGSSPASTSRGGWGCLGSS 342
           +S +A   S+GP+GG    +  ++S GG   A++S   +G  GSS
Sbjct: 293 SSQSAAASSLGPYGGAQPSASALSSYGGQPAAASSLNSYGAQGSS 337

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>HAPIP_RAT (P97924) Huntingtin-associated protein-interacting protein (Protein|
            Duo) (Kalirin) (PAM COOH-terminal interactor protein 10)
            (P-CIP10)
          Length = 1919

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -3

Query: 341  DEPKQPHPPRLVEAGDDPPQEVMRTLIPPK-GPTECSGAAPLV---PKLMNRRTESNKSW 174
            +E   P PP +    +DP Q+ M +L+  +  PT+   AA LV    KL+  +  S  + 
Sbjct: 1826 EESHTPLPPPMKIFDNDPTQDEMSSLLAARQAPTDVPTAADLVSAIEKLVKSKLVSGHAG 1885

Query: 173  SATPLPL 153
             +  LPL
Sbjct: 1886 GSRVLPL 1892

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>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I|
          Length = 602

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 341 DEPKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMN 201
           +EP  P PP      D P   ++  +     P E +GA  L P L N
Sbjct: 498 NEPPPPPPPAEALRADQPRHSLIHEVGAQADPAEANGAQALSPVLPN 544

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>LORI_HUMAN (P23490) Loricrin|
          Length = 316

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 247 GPFGGISVRITSCGGSSPASTSRGGWGCLGS 339
           G F G +V+  S GG S   +S GG GC  S
Sbjct: 149 GGFSGQAVQCQSYGGVSSGGSSGGGSGCFSS 179

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 332 KQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPL 219
           KQP PP    A   PP+E  +   PPK         PL
Sbjct: 742 KQPQPPSQPPASQAPPKEAAQAQPPPKAAPTKKETKPL 779

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>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 371

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P  P +    ++PP        PP GP     A+P+V +L  RR    +   A PL 
Sbjct: 216 PPDPSSPLIDLLTEEPPPYPGGHGPPPSGP-RTPAASPIVSRLRERRENPAEESQALPLR 274

Query: 155 LEGGNGP 135
               N P
Sbjct: 275 EGPNNRP 281

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>FMN2_MOUSE (Q9JL04) Formin-2|
          Length = 1567

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/64 (31%), Positives = 23/64 (35%)
 Frame = -3

Query: 326  PHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLPLEG 147
            P PP L  +G  PP  +    IPP  P    G  P  P                P PL  
Sbjct: 1032 PPPPPLPGSGIPPPPALPGVAIPPPPPLPGMGVPPPAP--------PPPGAGIPPPPLLP 1083

Query: 146  GNGP 135
            G+GP
Sbjct: 1084 GSGP 1087

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>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 737

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
 Frame = -3

Query: 341 DEPKQPHPP-----RLVE-------AGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNR 198
           D+P  PHPP     +L E        GDD      +  +P   P E S A  L   ++ +
Sbjct: 603 DQPAVPHPPPSTPIKLEEDLVPEPTTGDDSDAATFKPTLPDLSPDEPSEA--LGFPMLEK 660

Query: 197 RTESNKSWSATPLPLEGGNGP 135
             E+++  S T  P E    P
Sbjct: 661 EEEAHRPPSPTEAPTEASPEP 681

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>FTSK_CHLMU (Q9PLI7) DNA translocase ftsK|
          Length = 794

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 290 PPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP-LEGGNGP 135
           PP    RTL P K P         +P L+ +RT S    S++P P +  G  P
Sbjct: 275 PPHPAKRTLAPQKKPD--------LPDLLQKRTSSTPIPSSSPSPFIVAGEAP 319

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>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/66 (31%), Positives = 23/66 (34%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P PP L   G  PP         P  P   SG+AP  P                P P
Sbjct: 506 PPPPPPPPLANYGAPPP---------PPPPPPGSGSAPPPP---------------PPAP 541

Query: 155 LEGGNG 138
           +EGG G
Sbjct: 542 IEGGGG 547

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>ITIH4_HUMAN (Q14624) Inter-alpha-trypsin inhibitor heavy chain H4 precursor|
           (ITI heavy chain H4) (Inter-alpha-inhibitor heavy chain
           4) (Inter-alpha-trypsin inhibitor family heavy
           chain-related protein) (IHRP) (Plasma kallikrein
           sensitive glycoprotein 120
          Length = 930

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 266 LIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLPLE 150
           ++P   P   S   P V ++MN + E     + TP P++
Sbjct: 692 ILPASAPPATSNPDPAVSRVMNMKIEETTMTTQTPAPIQ 730

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>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 DEPKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTE 240
           D+P+QP PP+  +    PPQ+  +   PP+ P +
Sbjct: 109 DQPQQPQPPQ--QPPQQPPQQQPQPPQPPQQPPQ 140

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>PLCG1_BOVIN (P08487) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
            (PLC-148)
          Length = 1291

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 244  VGPFGGISVRITSCGGSSPASTSRGGWGCLGSSREEP 354
            + PFGG S+R  SC  S P    R   G   +  ++P
Sbjct: 1221 LSPFGGASLRERSCDASGPLFHGRAREGSFEARYQQP 1257

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAP 222
           P+QP PP        PPQ+  +   PP  P+    AAP
Sbjct: 754 PQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAP 791

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>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECS---GAAPLVPKLMNRRTESNK----S 177
           P    PP L      P QE      PP  P  CS   G  PL P     R  +      +
Sbjct: 433 PPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGT 492

Query: 176 WSATPLPLEGGNGP 135
              TP P     GP
Sbjct: 493 SPPTPTPSTATGGP 506

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>FOXJ2_HUMAN (Q9P0K8) Forkhead box protein J2 (Fork head homologous X)|
          Length = 574

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -3

Query: 338 EPKQPHPPRLVEAGDDPPQ------EVMRTLIPPKGPTECSGAAPL 219
           + +QP PP+  +    PPQ      +  +   P +GP+   GA PL
Sbjct: 291 QQQQPPPPQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPL 336

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>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 335 PKQPHPPRLV--EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           P+QP PPR+     G  P  E    L PP  P + + A  L P L +  TE+
Sbjct: 100 PQQPQPPRMQTGRGGSAPRPE----LGPPTNPFQAAVARGLRPPLHDPDTEA 147

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>CHB4_ANTPO (P02847) Chorion class B protein PC401 precursor (Fragment)|
          Length = 171

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 223 GAAPEHSVGPFGGISVRITSCGGSSPASTSRGGWGCLG 336
           G A    V P  G  V    CG  +   TS GG+G LG
Sbjct: 102 GTAGVEGVFPTAGAGVINYGCGDGAVGITSEGGYGGLG 139

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>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -3

Query: 320  PPRLVEAGDDPPQEVMRTLIPPK--GPTECSGAAPLVPKL----MNRRTESNKSWSATPL 159
            PP+L +    PP    R + PPK   P   +   PL P L    ++++T S +  +A  +
Sbjct: 1203 PPQLPKVATPPPPSSPRVITPPKTSPPANAAKVTPLKPVLTPTQVDKKTPSPEKRTAAQM 1262

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>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 335 PKQPHPPRLV--EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           P+QP PPR+     G  P  E    L PP  P + + A  L P L +  TE+
Sbjct: 101 PQQPQPPRMQTGRGGSAPRPE----LGPPTNPFQAAVARGLRPPLHDPDTEA 148

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>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 335 PKQPHPPRLV--EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           P+QP PPR+     G  P  E    L PP  P + + A  L P L +  TE+
Sbjct: 101 PQQPQPPRMQTGRGGSAPRPE----LGPPTNPFQAAVARGLRPPLHDPDTEA 148

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>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 335 PKQPHPPRLV--EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           P+QP PPR+     G  P  E    L PP  P + + A  L P L +  TE+
Sbjct: 101 PQQPQPPRMQTGRGGSAPRPE----LGPPTNPFQAAVARGLRPPLHDPDTEA 148

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>DBP_HUMAN (Q10586) D site-binding protein (Albumin D box-binding protein)|
           (Albumin D-element-binding protein) (TAXREB302)
          Length = 325

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAP 222
           P  P PP     G  P     RT  P  GP  C  A+P
Sbjct: 129 PPSPPPP----GGPSPEPSPARTPAPSPGPGSCGSASP 162

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>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 580

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P  P +    ++PP        PP GP     A+P+  +L  RR    +   A PL 
Sbjct: 216 PPDPSSPLIDLLTEEPPPYPGGHGPPPSGP-RTPAASPIASRLRERRENPAEESQALPLR 274

Query: 155 LEGGNGP 135
               N P
Sbjct: 275 EGPNNRP 281

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>Y104_ENCCU (Q8STF2) Hypothetical protein|
           ECU01_0040/ECU01_1570/ECU04_0050/ECU05_0020/
           ECU08_2130/ECU10_1880
          Length = 204

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 287 PQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P E++ +++PP       G  PL   L+N+  ++  + S  P+P
Sbjct: 84  PNELLLSMLPPVPRRPRGGCRPLHAPLLNKMPQTFPAASERPMP 127

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>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4)
          Length = 583

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 231 PGALRRALWRDQRPHH 278
           P  L + LWRD +PHH
Sbjct: 431 PSYLDKLLWRDNKPHH 446

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>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second|
           cousin)
          Length = 919

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = -3

Query: 305 EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           E G D PQE   T  PP+GPT     AP      N  TES
Sbjct: 335 EPGVDTPQEPGDT--PPQGPTSLEPLAPPESTEDNGETES 372

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/64 (28%), Positives = 21/64 (32%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSATPLP 156
           P  P P     A   PP        PP  P     AAP VP     +   +   +  P P
Sbjct: 258 PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAP 317

Query: 155 LEGG 144
             GG
Sbjct: 318 AAGG 321

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>EX7L_NEIMB (Q9JYZ2) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 451

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 189 LRAAIHQLRHQRRRPGALRRALWRDQRPHHLLWRVISCLHKSRG 320
           L  A HQL   RR+    + AL     P H+L R  S +  +RG
Sbjct: 367 LSHAFHQLLTHRRQSLTAQAALLEAVSPQHILERGFSVVKNTRG 410

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>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast|
           crisis-like 2) (Lbc's second cousin)
          Length = 920

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = -3

Query: 305 EAGDDPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTES 186
           E G D PQE   T  PP+GPT     AP      N  TES
Sbjct: 336 EPGVDTPQEPGDT--PPQGPTSLEPLAPPESTEDNGETES 373

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>MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK)
          Length = 557

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 231 PGALRRALWRDQRPHH 278
           P  L + LWRD +PHH
Sbjct: 434 PSYLDKLLWRDNKPHH 449

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
 Frame = -3

Query: 335 PKQPHPPRLVEAGD---DPPQEVMRTLIPPKGPTECSGAAPLVPKLMNRRTESNKSWSAT 165
           P  P PPR          P  E      PP  P   S   P+VPK      E  +  +A 
Sbjct: 780 PGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPK------EEKEEETAA 833

Query: 164 PLPLEGG 144
             P+E G
Sbjct: 834 APPVEEG 840


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,307,502
Number of Sequences: 219361
Number of extensions: 934118
Number of successful extensions: 3429
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result