>ref|XM_450818.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2025

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                       
Query: 300 tgcctccacaagtcgaggggggtggggctgcttgggctcatctcgagaagagcccctcgc 359
           |||||||  |||||||||||| |||| ||||| ||||||||||| |  ||||||||||||
Sbjct: 145 tgcctccggaagtcgagggggatgggtctgctcgggctcatctcca--agagcccctcgc 202

                                  
Query: 360 cgccgcgcggcctgctgccgccg 382
           |||||||| ||||||||||||||
Sbjct: 203 cgccgcgccgcctgctgccgccg 225

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                            
Query: 300      tgcctccacaagtcgaggggggtggggctgcttgggctcatctcgagaagagcccctcgc 359
                |||||||  |||||||||||| |||| ||||| ||||||||||| |  ||||||||||||
Sbjct: 12956584 tgcctccggaagtcgagggggatgggtctgctcgggctcatctcca--agagcccctcgc 12956641

                                       
Query: 360      cgccgcgcggcctgctgccgccg 382
                |||||||| ||||||||||||||
Sbjct: 12956642 cgccgcgccgcctgctgccgccg 12956664

>dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0505H05
          Length = 152845

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                          
Query: 300    tgcctccacaagtcgaggggggtggggctgcttgggctcatctcgagaagagcccctcgc 359
              |||||||  |||||||||||| |||| ||||| ||||||||||| |  ||||||||||||
Sbjct: 118568 tgcctccggaagtcgagggggatgggtctgctcgggctcatctcca--agagcccctcgc 118625

                                     
Query: 360    cgccgcgcggcctgctgccgccg 382
              |||||||| ||||||||||||||
Sbjct: 118626 cgccgcgccgcctgctgccgccg 118648

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 209      acttcggcaccagcggcgccgcc 231
                |||||||||||||||||||||||
Sbjct: 21264872 acttcggcaccagcggcgccgcc 21264850

>dbj|AK071593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103G12, full
           insert sequence
          Length = 1564

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 209 acttcggcaccagcggcgccgcc 231
           |||||||||||||||||||||||
Sbjct: 414 acttcggcaccagcggcgccgcc 436

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 209      acttcggcaccagcggcgccgcc 231
                |||||||||||||||||||||||
Sbjct: 21191081 acttcggcaccagcggcgccgcc 21191059

>emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb0094E08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137571

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 209   acttcggcaccagcggcgccgcc 231
             |||||||||||||||||||||||
Sbjct: 25328 acttcggcaccagcggcgccgcc 25350

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     gcgcggcctgctgccgccga 383
               ||||||||||||||||||||
Sbjct: 6186286 gcgcggcctgctgccgccga 6186267

>gb|AY683854.1| Uncultured bacterium clone SJY-8 copper-containing dissimilatory
           nitrite reductase (nirK) gene, partial cds
          Length = 515

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 258 cgggatcagcgtccgcatcacctc 281
           |||||||||| |||||||||||||
Sbjct: 228 cgggatcagcttccgcatcacctc 205

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 153     gagcggcagcggggtcgcac 172
               ||||||||||||||||||||
Sbjct: 2059439 gagcggcagcggggtcgcac 2059458

>gb|AC166040.3| Mus musculus 6 BAC RP24-538P5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200847

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ccgcccctcccctcctatcc 22
             ||||||||||||||||||||
Sbjct: 63665 ccgcccctcccctcctatcc 63684

>emb|AL161916.8| Human DNA sequence from clone RP4-636O23 on chromosome 1p31.3-32.2
             Contains the 3' end of gene MGC35130, complete sequence
          Length = 99249

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   gggtcatctcctgcctccac 308
             ||||||||||||||||||||
Sbjct: 14051 gggtcatctcctgcctccac 14032

>gb|DQ159741.1| Uncultured bacterium clone hbB_G08 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 422

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 258 cgggatcagcgtccgcatcacctc 281
           ||||||||| ||||||||||||||
Sbjct: 172 cgggatcagggtccgcatcacctc 149

>gb|DQ159704.1| Uncultured bacterium clone hbA_H06 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 422

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 258 cgggatcagcgtccgcatcacctc 281
           ||||||||| ||||||||||||||
Sbjct: 172 cgggatcagggtccgcatcacctc 149

>gb|DQ159697.1| Uncultured bacterium clone hbA_G05 putative dissimilatory nitrite
           reductase (nirK) gene, partial cds
          Length = 422

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 258 cgggatcagcgtccgcatcacctc 281
           ||||||||| ||||||||||||||
Sbjct: 172 cgggatcagggtccgcatcacctc 149

>ref|XM_627100.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_1960),
            partial mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   atcccacatccgattcagac 38
            ||||||||||||||||||||
Sbjct: 1159 atcccacatccgattcagac 1140

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      gaagagcccctcgccgccgc 365
                ||||||||||||||||||||
Sbjct: 28866511 gaagagcccctcgccgccgc 28866492

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 210     cttcggcaccagcggcgccgcccc 233
               |||||||||||||| |||||||||
Sbjct: 3364426 cttcggcaccagcgccgccgcccc 3364449

>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   gaagagcccctcgccgccgc 365
             ||||||||||||||||||||
Sbjct: 16555 gaagagcccctcgccgccgc 16536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,350,927
Number of Sequences: 3902068
Number of extensions: 3350927
Number of successful extensions: 61819
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61475
Number of HSP's gapped (non-prelim): 341
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)