ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast47d10 |
|---|---|
| Clone Library Name | barley_pub |
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 137 LGLLNQGYELNRNGELYVIRKPELKTKIVDGTSLAVAAVLHMIPRGAN 280 L LL ++ N+ +L+ +RK + K ++ T+L A LH I R N Sbjct: 1698 LDLLEGNFDANQELKLFTLRKISVALKELNATNLLQKAALHKISRFVN 1745
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = +1 Query: 265 PSGRQRRAPPRE--GVQGRVR----AGPGPLRTGHP 354 P G+QR+ PP++ G G +R AGPGP RTG P Sbjct: 580 PGGQQRQGPPQKPPGPAGPIRQASQAGPGP-RTGPP 614
>TRP_DROME (P19334) Transient receptor potential protein| Length = 1275 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/60 (26%), Positives = 25/60 (41%) Frame = +1 Query: 145 PEPGVRAEPERGAVRDQEA*TENEDXXXXXXXXXXXAPHDPSGRQRRAPPREGVQGRVRA 324 P+PG A+PE A +++ + TE AP PS + + + G G A Sbjct: 1076 PKPGESAKPEAAAKKEESSKTEASKPAATNGAAKSAAPSAPSDAKPDSKLKPGAAGAPEA 1135
>YCE2_YEAST (P25572) Hypothetical protein YCL042W| Length = 119 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Frame = -3 Query: 354 WMSRSQRAWASTDTTLHSFPRRSTSLAPRGIMWSTAATARLVPSTIFVFSSGFLITYSSP 175 W + + WA T + +P + P + S + +T ++ TY+ P Sbjct: 35 WCHTTLKRWALMKTRPYKYPLSTEPPTPPSVPNSASVNHNTTTNTTLSYTRCHSTTYTKP 94 Query: 174 FR-FSSYPWFR 145 R SS PW R Sbjct: 95 LRERSSRPWTR 105
>DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = -3 Query: 348 SRSQRAWASTDTTLHSFPRRSTSLAPRGIMWSTAATARLVP 226 SR R WA TL FPR S P G + S +RLVP Sbjct: 475 SRVARQWAELAETLMGFPRH-LSQHPGGFVISRGKLSRLVP 514
>DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = -3 Query: 348 SRSQRAWASTDTTLHSFPRRSTSLAPRGIMWSTAATARLVP 226 SR R WA TL FPR S P G + S +RLVP Sbjct: 475 SRVARQWAELAETLMGFPRH-LSQHPGGFVISRGKLSRLVP 514
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%) Frame = +1 Query: 265 PSGRQRRAPPRE--GVQGRVR----AGPGPLRTGHP 354 P G+QR+ PP++ G G R AGPGP RTG P Sbjct: 582 PGGQQRQGPPQKPPGPAGPTRQASQAGPGP-RTGPP 616
>METX_THICR (Q31EJ2) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 385 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 352 DVPFAEGLGQHGHDLALLPEEEH 284 D+ +AE QHGHD LLP + + Sbjct: 339 DISYAEVNSQHGHDAFLLPNDHY 361
>YCDA_BACSU (O34538) Hypothetical lipoprotein ycdA precursor| Length = 354 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +2 Query: 158 YELNRNGELYVIRKPELKTKIVDGTSLAVAAVLHMIPRGAN------DVLLLGKE 304 YELN E Y +KP+ T +DG + A + A DVLL GK+ Sbjct: 136 YELNYTPESYGDKKPKSVTFKIDGKDKKILATADKLQDSAKALSAYVDVLLFGKD 190
>EXSA_PSEAE (P26993) Exoenzyme S synthesis regulatory protein exsA| Length = 278 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +2 Query: 158 YELNRNGELYVIRKPELKTKIVDGTSLAVAAVLHMIPRGANDVLLLGKECKVV 316 Y +N+ +YV+ + EL + +D T L + RG+ V GK+ +++ Sbjct: 24 YRVNKEEGVYVLLEGELTVQDIDSTFCLAPGELLFVRRGSYVVSTKGKDSRIL 76
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +1 Query: 268 SGRQRRAP-PREGVQGRVRAGPGPLRT 345 SGR++ AP PRE ++ R RA PG + T Sbjct: 14 SGRKKEAPGPREELRSRGRASPGGVST 40
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +1 Query: 268 SGRQRRAP-PREGVQGRVRAGPGPLRT 345 SGR++ AP PRE ++ R RA PG + T Sbjct: 14 SGRKKEAPGPREELRSRGRASPGGVST 40
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -2 Query: 394 PQRLVQIRVHHPNLDVPFAEGLGQHGHDLALLPEEEHVVGAPRDHV 257 PQ ++++ HPN D+P G H DL L+ +H V H+ Sbjct: 1941 PQLFERLKLCHPNPDLPIWWECGSHDRDL-LIGAAKHGVSRTDYHI 1985
>CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2312 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Frame = -2 Query: 400 LPPQRLVQIRVHHPNLDVPFAE--GLGQHGHDLALLPEEEHVVGAPRDHVEHGGDGEAGA 227 L PQ + Q+ P D F E L +L + H + P D EH G G A + Sbjct: 1940 LSPQDIFQLACMDPTDDGQFQERQSLEPEVSELKSVQPSNHGIYLPSDTQEHAGSGRASS 1999 Query: 226 VDDL 215 + L Sbjct: 2000 MPRL 2003
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +1 Query: 268 SGRQRRAP-PREGVQGRVRAGPGPLRT 345 SGR++ AP PRE ++ R RA PG + T Sbjct: 14 SGRKKEAPGPREELRSRGRASPGGVST 40
>Y1595_METJA (Q58990) Hypothetical UPF0104 protein MJ1595| Length = 336 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 273 PRGIMWSTAATARLVPSTIFVFSSGFLITY 184 P+G+ +ST R++ + IF+F + F+I Y Sbjct: 114 PKGLAFSTVVVERVLDTAIFLFFTLFVIGY 143
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -2 Query: 394 PQRLVQIRVHHPNLDVPFAEGLGQHGHDLALLPEEEHVVGAPRDHV 257 PQ ++++ HPN D+P G H DL L+ +H V H+ Sbjct: 1942 PQLFERLKLCHPNPDLPVWWECGPHDRDL-LIGAAKHGVSRTDYHI 1986
>LIPB_PORGI (Q7MUY1) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 492 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -2 Query: 394 PQRLVQIRVHHPNLDVPFAEGLGQHGHDLALLPEEEHVVGAPRD----HVEHGGD 242 PQ + H P L LG+HGH+ LL E + RD H+E GGD Sbjct: 307 PQNTLLFCEHEPVLT------LGKHGHEENLLLSESEL--KSRDIRLFHIERGGD 353
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 6/36 (16%) Frame = +1 Query: 265 PSGRQRRAPPRE--GVQGRVR----AGPGPLRTGHP 354 PSG+QR+ PP++ G G R AGP P RTG P Sbjct: 310 PSGQQRQGPPQKPPGPAGPTRQASQAGPMP-RTGPP 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,999,948 Number of Sequences: 219361 Number of extensions: 811458 Number of successful extensions: 3246 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3245 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
