ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast47c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187973.1| Oryza sativa (japonica cultivar-group), Ozsa8393 predicted mRNA Length = 678 Score = 123 bits (62), Expect = 5e-25 Identities = 124/142 (87%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 250 ggtggcgtccggggtggtgttctggtcgacggcgttcctgctgctgcg-ggcgctgctcc 308 ||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||| ||| Sbjct: 12 ggtggtgtccggggtggcgttctggtggacggcgttcctgctggcgcgcggcgcct-tcc 70 Query: 309 ccaagcgctcctacgacttctgcaaccgcgccgtctccaccatgcacgccgtcaccggcg 368 |||||||||||||||||||||||||||||||||||||| || ||||||| | ||| || Sbjct: 71 ccaagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccg 130 Query: 369 tcgccctcggctgcctctccgt 390 || |||||| |||||||||||| Sbjct: 131 tctccctcgcctgcctctccgt 152
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 5e-25 Identities = 124/142 (87%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 250 ggtggcgtccggggtggtgttctggtcgacggcgttcctgctgctgcg-ggcgctgctcc 308 ||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||| ||| Sbjct: 8882492 ggtggtgtccggggtggcgttctggtggacggcgttcctgctggcgcgcggcgcct-tcc 8882550 Query: 309 ccaagcgctcctacgacttctgcaaccgcgccgtctccaccatgcacgccgtcaccggcg 368 |||||||||||||||||||||||||||||||||||||| || ||||||| | ||| || Sbjct: 8882551 ccaagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccg 8882610 Query: 369 tcgccctcggctgcctctccgt 390 || |||||| |||||||||||| Sbjct: 8882611 tctccctcgcctgcctctccgt 8882632
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 123 bits (62), Expect = 5e-25 Identities = 124/142 (87%), Gaps = 2/142 (1%) Strand = Plus / Plus Query: 250 ggtggcgtccggggtggtgttctggtcgacggcgttcctgctgctgcg-ggcgctgctcc 308 ||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||| ||| Sbjct: 118520 ggtggtgtccggggtggcgttctggtggacggcgttcctgctggcgcgcggcgcct-tcc 118578 Query: 309 ccaagcgctcctacgacttctgcaaccgcgccgtctccaccatgcacgccgtcaccggcg 368 |||||||||||||||||||||||||||||||||||||| || ||||||| | ||| || Sbjct: 118579 ccaagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccg 118638 Query: 369 tcgccctcggctgcctctccgt 390 || |||||| |||||||||||| Sbjct: 118639 tctccctcgcctgcctctccgt 118660
>dbj|AK071545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099M14, full insert sequence Length = 865 Score = 121 bits (61), Expect = 2e-24 Identities = 123/141 (87%), Gaps = 2/141 (1%) Strand = Plus / Plus Query: 251 gtggcgtccggggtggtgttctggtcgacggcgttcctgctgctgcg-ggcgctgctccc 309 |||| ||||||||||| |||||||| |||||||||||||||| ||| ||||| |||| Sbjct: 1 gtggtgtccggggtggcgttctggtggacggcgttcctgctggcgcgcggcgcct-tccc 59 Query: 310 caagcgctcctacgacttctgcaaccgcgccgtctccaccatgcacgccgtcaccggcgt 369 ||||||||||||||||||||||||||||||||||||| || ||||||| | ||| ||| Sbjct: 60 caagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgt 119 Query: 370 cgccctcggctgcctctccgt 390 | |||||| |||||||||||| Sbjct: 120 ctccctcgcctgcctctccgt 140
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 350 atgcacgccgtcaccggcgtcgcc 373 |||||||||||||||||||||||| Sbjct: 66953 atgcacgccgtcaccggcgtcgcc 66930
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 195 cgtcgtcgccgcgaagccgccgc 217 ||||||||||||||||||||||| Sbjct: 3491871 cgtcgtcgccgcgaagccgccgc 3491893
>emb|BX000520.12| Mouse DNA sequence from clone RP23-261N8 on chromosome X, complete sequence Length = 112153 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 16 ccctctcttccccccttccctgcctcccaccgtcc 50 ||||| ||||||||||||||| |||||| |||||| Sbjct: 26540 ccctcccttccccccttccctccctccctccgtcc 26506
>ref|XM_510763.1| PREDICTED: Pan troglodytes similar to CDNA sequence BC038613 (LOC453855), mRNA Length = 2982 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 285 tcctgctgctgcgggcgctgctccccaagc 314 |||||||||| || |||||||||||||||| Sbjct: 1487 tcctgctgctccgagcgctgctccccaagc 1458
>ref|XM_414651.1| PREDICTED: Gallus gallus similar to Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C (Ubiquinol-cytochrome C reductase complex 9.5 kDa protein) (Complex III subunit VII) (LOC416336), mRNA Length = 1150 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 cctctcttccccccttccctgc 38 |||||||||||||||||||||| Sbjct: 26 cctctcttccccccttccctgc 47
>ref|XM_957217.1| Neurospora crassa OR74A hypothetical protein (NCU07668.1) partial mRNA Length = 1656 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ggactgggcctcccccgtctcccccgtcgcctca 427 ||||||||||||| || |||||||||||| |||| Sbjct: 861 ggactgggcctccaccatctcccccgtcgactca 828
>ref|XM_328373.1| Neurospora crassa OR74A hypothetical protein (NCU07668.1) partial mRNA Length = 1656 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ggactgggcctcccccgtctcccccgtcgcctca 427 ||||||||||||| || |||||||||||| |||| Sbjct: 861 ggactgggcctccaccatctcccccgtcgactca 828
>gb|AC104833.6| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-319B16, Complete Sequence, complete sequence Length = 171061 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ccccccttccctgcctcccacc 46 |||||||||||||||||||||| Sbjct: 155688 ccccccttccctgcctcccacc 155667
>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161735 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 18 ctctcttccccccttccctgcctccc 43 ||||||||||||||||||| |||||| Sbjct: 109774 ctctcttccccccttccctccctccc 109799
>gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome Length = 108409 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 ctcccccgtctcccccgtcgcc 424 |||||||||||||||||||||| Sbjct: 102185 ctcccccgtctcccccgtcgcc 102206 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctcccccgtctcccccgtcg 422 |||||||||||||||||||| Sbjct: 102122 ctcccccgtctcccccgtcg 102141 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctcccccgtctcccccgtcg 422 |||||||||||||||||||| Sbjct: 102023 ctcccccgtctcccccgtcg 102042 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cccccgtctcccccgtcgcc 424 |||||||||||||||||||| Sbjct: 101971 cccccgtctcccccgtcgcc 101990
>gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromosome unknown, complete sequence Length = 220538 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 cctctcttccccccttccctgc 38 |||||||||||||||||||||| Sbjct: 163252 cctctcttccccccttccctgc 163231
>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete sequence Length = 211288 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 cctctcttccccccttccctgc 38 |||||||||||||||||||||| Sbjct: 916 cctctcttccccccttccctgc 895
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 363 ccggcgtcgccctcggctgcctctc 387 |||||| |||||||||||||||||| Sbjct: 76454 ccggcgccgccctcggctgcctctc 76430
>gb|AY596305.1| Chlamydomonas reinhardtii cell wall protein GP2 (GP2) mRNA, partial cds Length = 4218 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 cctcccccgtctcccccgtcgcctc 426 ||||||||| ||||||||||||||| Sbjct: 2623 cctcccccgactcccccgtcgcctc 2647
>gb|AC106738.3| Homo sapiens chromosome 16 clone CTD-3032H12, complete sequence Length = 152312 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 tcttccccccttccctgcctcccac 45 |||||||||||||||| |||||||| Sbjct: 87239 tcttccccccttccctccctcccac 87215
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 ttcctgctgctgcgggcgctg 304 ||||||||||||||||||||| Sbjct: 4846236 ttcctgctgctgcgggcgctg 4846256
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 363 ccggcgtcgccctcggctgcctctc 387 |||||| |||||||||||||||||| Sbjct: 29066399 ccggcgccgccctcggctgcctctc 29066375
>emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chromosome 4, complete sequence Length = 114436 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 ccctctcttccccccttccct 36 ||||||||||||||||||||| Sbjct: 66199 ccctctcttccccccttccct 66179
>gb|AC120391.6| Mus musculus chromosome 1, clone RP24-310B3, complete sequence Length = 172679 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 42389 gttcctgctgctgcgggtgctgct 42366
>ref|XM_469226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 999 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 cggcgtggcgagcctggtggcgtc 258 ||||||||||||| |||||||||| Sbjct: 432 cggcgtggcgagcttggtggcgtc 455
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tcgtcgccgcgaagccgccg 216 |||||||||||||||||||| Sbjct: 1589474 tcgtcgccgcgaagccgccg 1589455
>gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, complete sequence Length = 176113 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 120381 tccccccttccctgcctccc 120362
>gb|AY669386.1| Chlamydomonas reinhardtii nitrite/nitrate transporter (Nrt2;3) mRNA, complete cds, alternatively spliced Length = 2733 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ctgctgctgcgggcgctgctcccc 310 |||||||||||| ||||||||||| Sbjct: 1732 ctgctgctgcggccgctgctcccc 1709
>ref|XM_950856.1| Neurospora crassa OR74A hypothetical protein (NCU06407.1) partial mRNA Length = 3396 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctcccccgtctcccccgtcg 422 |||||||||||||||||||| Sbjct: 2886 ctcccccgtctcccccgtcg 2905
>ref|XM_326261.1| Neurospora crassa OR74A hypothetical protein (NCU06407.1) partial mRNA Length = 3396 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctcccccgtctcccccgtcg 422 |||||||||||||||||||| Sbjct: 2886 ctcccccgtctcccccgtcg 2905
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tcgtcgccgcgaagccgccg 216 |||||||||||||||||||| Sbjct: 2836042 tcgtcgccgcgaagccgccg 2836023
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 tacggcggcgtggcgagcctggtg 253 ||||||||||||||| |||||||| Sbjct: 5446413 tacggcggcgtggcgggcctggtg 5446436
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 cggcgtggcgagcctggtggcgtc 258 ||||||||||||| |||||||||| Sbjct: 26221606 cggcgtggcgagcttggtggcgtc 26221583
>gb|AC121314.7| Mus musculus chromosome 1, clone RP24-429M15, complete sequence Length = 175976 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 160223 gttcctgctgctgcgggtgctgct 160200
>ref|XM_986931.1| PREDICTED: Mus musculus centrosomal protein 350 (Cep350), mRNA Length = 12890 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 7978 gttcctgctgctgcgggtgctgct 8001
>ref|XM_916986.2| PREDICTED: Mus musculus centrosomal protein 350, transcript variant 5 (Cep350), mRNA Length = 12896 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 7975 gttcctgctgctgcgggtgctgct 7998
>ref|XM_129509.8| PREDICTED: Mus musculus centrosomal protein 350, transcript variant 1 (Cep350), mRNA Length = 12887 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 7975 gttcctgctgctgcgggtgctgct 7998
>gb|AC110234.11| Mus musculus chromosome 5, clone RP23-76J15, complete sequence Length = 235276 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cctctcttccccccttccct 36 |||||||||||||||||||| Sbjct: 112182 cctctcttccccccttccct 112163
>emb|AL158155.24| Human DNA sequence from clone RP11-397D12 on chromosome 9p12-13.3 Contains the 3' end of a novel gene (FLJ22611), a novel gene, the GRHPR gene for glyoxylate reductase/hydroxypyruvate reductase, a novel gene (KIAA0354), a novel pseuodgene and a CpG island, complete sequence Length = 192336 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 106524 tccccccttccctgcctccc 106505
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 caccggcgtcgccctcggctgcct 384 |||||||||||| ||||||||||| Sbjct: 3181668 caccggcgtcgcgctcggctgcct 3181645
>emb|AL354864.16| Human DNA sequence from clone RP11-435D7 on chromosome 1 Contains the 5' end of the PSMB2 gene for proteasome (prosome, macropain) subunit, beta type, 2, a novel transcript (FLJ38984), a putative novel transcript, the CLSPN gene for claspin homolog (Xenopus laevis) and the 5' end of the EIF2C4 gene for eukaryotic translation initiation factor 2C, 4, complete sequence Length = 194296 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gggcctcccccgtctccccc 418 |||||||||||||||||||| Sbjct: 111670 gggcctcccccgtctccccc 111689
>emb|AL121756.14|HSDJ726C3 Human DNA sequence from clone RP4-726C3 on chromosome 20 Contains the C20orf185 gene for the possible ortholog of potential ligand_binding protein RYA3 (Rat), the C20orf186 gene for the possible ortholog of potential ligand_binding protein RY2G5 (Rat), the 5' end of the SPAG4L gene for sperm associated antigen 4-like, a novel gene, a FAM16AX (family with sequence similarity 16, member A, X-linked) pseudogene, the BPIL3 gene for bactericidal/permeability-increasing protein-like 3 and a CpG island, complete sequence Length = 129502 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ccccttccctgcctcccacc 46 |||||||||||||||||||| Sbjct: 75130 ccccttccctgcctcccacc 75149
>gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186298 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cccccttccctgcctcccac 45 |||||||||||||||||||| Sbjct: 151623 cccccttccctgcctcccac 151642
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tcgtcgccgcgaagccgccg 216 |||||||||||||||||||| Sbjct: 2566231 tcgtcgccgcgaagccgccg 2566212
>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the (pseudo)gene for a novel protein similar to high-mobility group box 1 (Hmgb1), complete sequence Length = 226259 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ctacaactagccactgtcct 69 |||||||||||||||||||| Sbjct: 9913 ctacaactagccactgtcct 9932
>emb|BX322649.4| Mouse DNA sequence from clone RP23-206P23 on chromosome 4, complete sequence Length = 50666 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ctacaactagccactgtcct 69 |||||||||||||||||||| Sbjct: 17940 ctacaactagccactgtcct 17959
>emb|CR536608.3| Human DNA sequence from clone CITF22-5B3 on chromosome 22, complete sequence Length = 9827 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 ctgggcctcccccgtctcccccgt 420 ||||||||||||||| |||||||| Sbjct: 3255 ctgggcctcccccgtttcccccgt 3232
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ctgctgctgcgggcgctgct 306 |||||||||||||||||||| Sbjct: 799080 ctgctgctgcgggcgctgct 799061
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 acggcgttcctgctgctgcgggcgctgc 305 |||| |||||||||||||| |||||||| Sbjct: 5349846 acggtgttcctgctgctgctggcgctgc 5349873
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ccatgcacgccgtcaccggc 367 |||||||||||||||||||| Sbjct: 2414977 ccatgcacgccgtcaccggc 2414958
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ccatgcacgccgtcaccggc 367 |||||||||||||||||||| Sbjct: 1987144 ccatgcacgccgtcaccggc 1987163
>gb|AE005689.1| Caulobacter crescentus CB15 section 15 of 359 of the complete genome Length = 11119 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gtcgccgcgaagccgccgcc 218 |||||||||||||||||||| Sbjct: 2733 gtcgccgcgaagccgccgcc 2714
>gb|AE012185.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 93 of 460 of the complete genome Length = 10953 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 acggcgttcctgctgctgcg 297 |||||||||||||||||||| Sbjct: 8645 acggcgttcctgctgctgcg 8626
>gb|DQ311227.1| Bombyx mori transketolase mRNA, complete cds Length = 3551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gccctcggctgcctctccgt 390 |||||||||||||||||||| Sbjct: 563 gccctcggctgcctctccgt 544
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ccatgcacgccgtcaccggc 367 |||||||||||||||||||| Sbjct: 2455464 ccatgcacgccgtcaccggc 2455445
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 cggcgtggcgagcctggtggcgtc 258 ||||||||||||| |||||||||| Sbjct: 51065 cggcgtggcgagcttggtggcgtc 51042
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 acggcgttcctgctgctgcg 297 |||||||||||||||||||| Sbjct: 4018129 acggcgttcctgctgctgcg 4018148
>emb|AL110708.1|CNS018RH Botrytis cinerea strain T4 cDNA library Length = 660 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ccctctcttccccccttccc 35 |||||||||||||||||||| Sbjct: 586 ccctctcttccccccttccc 605
>gb|U33324.1|CCU33324 Caulobacter crescentus RNase PH (rph) gene, GrpE (grpE) gene and associated heat-inducible (hrcA) gene, complete cds Length = 2729 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gtcgccgcgaagccgccgcc 218 |||||||||||||||||||| Sbjct: 657 gtcgccgcgaagccgccgcc 638
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 cggcgtggcgagcctggtggcgtc 258 ||||||||||||| |||||||||| Sbjct: 26312915 cggcgtggcgagcttggtggcgtc 26312892
>gb|AC068291.6| Homo sapiens BAC clone RP11-670I21 from 2, complete sequence Length = 113955 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 ctcttccccccttccctgcctccc 43 ||||||||||||||||| |||||| Sbjct: 35136 ctcttccccccttccctccctccc 35113
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cctgctgctgcgggcgctgc 305 |||||||||||||||||||| Sbjct: 7913989 cctgctgctgcgggcgctgc 7914008
>gb|AC130310.17| Homo sapiens chromosome 11, clone RP11-269A12, complete sequence Length = 155537 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 101388 tccccccttccctgcctccc 101407 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 79332 tccccccttccctgcctccc 79313
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ggcggcgtggcgagcctggtggcg 256 |||||||||| ||||||||||||| Sbjct: 3583901 ggcggcgtggagagcctggtggcg 3583924
>dbj|AK172956.1| Mus musculus mRNA for mKIAA0480 protein Length = 9413 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 gttcctgctgctgcgggcgctgct 306 ||||||||||||||||| |||||| Sbjct: 4503 gttcctgctgctgcgggtgctgct 4526
>emb|AJ414383.1|RSO414383 Ralstonia solanacearum partial mutS gene Length = 2088 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ggcgtggcgagcctggtggc 255 |||||||||||||||||||| Sbjct: 568 ggcgtggcgagcctggtggc 587
>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete sequence Length = 190267 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 182392 tccccccttccctgcctccc 182411
>emb|AJ223296.2|CRAJ3296 Chlamydomonas reinhardtii Nrt2;3 gene for nitrate transport protein and ppx-1 gene for protoporphyrinogen oxidase homologue Length = 5512 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 ctgctgctgcgggcgctgctcccc 310 |||||||||||| ||||||||||| Sbjct: 4267 ctgctgctgcggccgctgctcccc 4244
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ggcgtggcgagcctggtggc 255 |||||||||||||||||||| Sbjct: 1209171 ggcgtggcgagcctggtggc 1209152
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tcgtcgccgcgaagccgccg 216 |||||||||||||||||||| Sbjct: 2322438 tcgtcgccgcgaagccgccg 2322457
>emb|AL844588.17| Mouse DNA sequence from clone RP23-244N6 on chromosome 2, complete sequence Length = 142422 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 tctcttccccccttccctgcctcccacc 46 |||| ||||||||||||| ||||||||| Sbjct: 53139 tctcctccccccttccctccctcccacc 53112
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 cccccgtctcccccgtcgcc 424 |||||||||||||||||||| Sbjct: 1497437 cccccgtctcccccgtcgcc 1497418
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 accggcgtcgccctcggctgcctc 385 |||||||||||||||||| ||||| Sbjct: 290592 accggcgtcgccctcggccgcctc 290615
>gb|AC102628.5| Mus musculus chromosome 7, clone RP23-467K15, complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tccccccttccctgcctccc 43 |||||||||||||||||||| Sbjct: 39647 tccccccttccctgcctccc 39628
>emb|AL603829.5| Mouse DNA sequence from clone RP23-416G21 on chromosome 11, complete sequence Length = 226220 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ccctctcttccccccttccctgcc 39 |||||||||||||||| ||||||| Sbjct: 190303 ccctctcttcccccctcccctgcc 190280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,786,946 Number of Sequences: 3902068 Number of extensions: 2786946 Number of successful extensions: 65813 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64006 Number of HSP's gapped (non-prelim): 1807 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
