ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome ... 82 2e-12
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3ref|XM_493818.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 56 1e-04
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 50 0.006
9ref|NM_191908.1| Oryza sativa (japonica cultivar-group), predic... 46 0.096
10gb|AY341855.1| Oryza sativa (japonica cultivar-group) WRKY14 mRN... 46 0.096
11gb|AY341844.1| Oryza sativa (japonica cultivar-group) WRKY3 mRNA... 46 0.096
12tpg|BK005019.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 46 0.096
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
14dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
15gb|AY870604.1| Oryza sativa (japonica cultivar-group) WRKY16 mRN... 46 0.096
16gb|AE012300.1| Xanthomonas campestris pv. campestris str. ATCC 3... 44 0.38
17gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 44 0.38
18ref|XM_517054.1| PREDICTED: Pan troglodytes similar to Diacylgly... 42 1.5
19gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
20gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
21emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.5
22gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's H... 42 1.5
23dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.5
24gb|AE011645.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
25gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, c... 42 1.5
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, comple... 42 1.5
28gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.5
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.5
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
31gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 5.9
32gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.9
33ref|XM_478701.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
34gb|AY320035.2| Bacteriophage VWB, complete genome 40 5.9
35gb|AC093473.6| Mus musculus chromosome 5, clone RP23-54H12, comp... 40 5.9
36gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.9
37gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, co... 40 5.9
38gb|AY373521.1| Trypanosoma cruzi pumilio protein 4 (PUF-4) gene,... 40 5.9
39gb|AC127266.4| Mus musculus BAC clone RP24-347B12 from chromosom... 40 5.9
40gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.9
41ref|XM_806056.1| Trypanosoma cruzi strain CL Brener pumilio/PUF ... 40 5.9
42ref|XM_812995.1| Trypanosoma cruzi strain CL Brener pumilio/PUF ... 40 5.9
43gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.9
44gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 5.9
45emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.9
46gb|AY129337.1| Mycobacteriophage Bxz1, complete genome 40 5.9
47gb|AC133336.5| Oryza sativa chromosome 3 BAC OSJNBa0011B06 genom... 40 5.9
48gb|AC108048.6| Homo sapiens BAC clone RP11-323K3 from 4, complet... 40 5.9
49dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.9
51dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
52dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.9
53gb|AE005043.1| Halobacterium sp. NRC-1 section 74 of 170 of the ... 40 5.9
54gb|U58846.1|NGU58846 Neisseria gonorrhoeae pilS1 silent pilus locus 40 5.9
55gb|AC004825.2|AC004825 Homo sapiens PAC clone RP1-292L20 from 14... 40 5.9
56emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-1... 40 5.9
57gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 5.9
58emb|CT030705.12| Mouse DNA sequence from clone RP23-118N11 on ch... 40 5.9
59gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.9
60emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chro... 40 5.9
61dbj|AP006361.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 5.9 
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                          
Query: 221    gccgccgccgtttacgcggaccgcacctccgtcatctgcggcggcaccgccttcacctgg 280
              |||||| |||| ||||| ||||||||||||||| | | ||||| ||||  |||||| |||
Sbjct: 129458 gccgcctccgtctacgccgaccgcacctccgtcgtgtacggcgccaccagcttcacgtgg 129399

                                                       
Query: 281    cgccacacgcacgaccgctgcgtccgcctgtccgccgcgct 321
              ||||| |||||| |||||||| |||||||  ||||||||||
Sbjct: 129398 cgccagacgcaccaccgctgcctccgcctcgccgccgcgct 129358



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 363    tcgcgcccaacacccccgcgctctacgagatgcacttcgcggtgcccatggccgg 417
              ||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 129053 tcgcgcccaacacgccggcgctgtacgagatgcacttcgccgtgccgatggccgg 128999
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 221      gccgccgccgtttacgcggaccgcacctccgtcatctgcggcggcaccgccttcacctgg 280
                |||||| |||| ||||| ||||||||||||||| | | ||||| ||||  |||||| |||
Sbjct: 21783438 gccgcctccgtctacgccgaccgcacctccgtcgtgtacggcgccaccagcttcacgtgg 21783379

                                                         
Query: 281      cgccacacgcacgaccgctgcgtccgcctgtccgccgcgct 321
                ||||| |||||| |||||||| |||||||  ||||||||||
Sbjct: 21783378 cgccagacgcaccaccgctgcctccgcctcgccgccgcgct 21783338



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363      tcgcgcccaacacccccgcgctctacgagatgcacttcgcggtgcccatggccgg 417
                ||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 21783033 tcgcgcccaacacgccggcgctgtacgagatgcacttcgccgtgccgatggccgg 21782979
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>ref|XM_493818.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1737

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 386 tacgagatgcacttcgcggtgcccatggccgg 417
           ||||||||||||||||||||||| ||||||||
Sbjct: 232 tacgagatgcacttcgcggtgccgatggccgg 263



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 209 ttcctgccgcgcgccgccgccgtttacgcggaccgcacctccgtcatctgcggc 262
           |||||||||||||||   ||||| ||||  ||||||||||||||||||| ||||
Sbjct: 55  ttcctgccgcgcgccaatgccgtctacggcgaccgcacctccgtcatctacggc 108
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                               
Query: 386     tacgagatgcacttcgcggtgcccatggccgg 417
               ||||||||||||||||||||||| ||||||||
Sbjct: 1686229 tacgagatgcacttcgcggtgccgatggccgg 1686260



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 209     ttcctgccgcgcgccgccgccgtttacgcggaccgcacctccgtcatctgcggc 262
               |||||||||||||||   ||||| ||||  ||||||||||||||||||| ||||
Sbjct: 1685918 ttcctgccgcgcgccaatgccgtctacggcgaccgcacctccgtcatctacggc 1685971



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 211      cctgccgcgcgccgccgccg 230
                ||||||||||||||||||||
Sbjct: 14650465 cctgccgcgcgccgccgccg 14650446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                               
Query: 386     tacgagatgcacttcgcggtgcccatggccgg 417
               ||||||||||||||||||||||| ||||||||
Sbjct: 1686227 tacgagatgcacttcgcggtgccgatggccgg 1686258



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 209     ttcctgccgcgcgccgccgccgtttacgcggaccgcacctccgtcatctgcggc 262
               |||||||||||||||   ||||| ||||  ||||||||||||||||||| ||||
Sbjct: 1685916 ttcctgccgcgcgccaatgccgtctacggcgaccgcacctccgtcatctacggc 1685969



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 211      cctgccgcgcgccgccgccg 230
                ||||||||||||||||||||
Sbjct: 14645440 cctgccgcgcgccgccgccg 14645421
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>dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full
           insert sequence
          Length = 1949

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 386 tacgagatgcacttcgcggtgcccatggccgg 417
           ||||||||||||||||||||||| ||||||||
Sbjct: 360 tacgagatgcacttcgcggtgccgatggccgg 391



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 209 ttcctgccgcgcgccgccgccgtttacgcggaccgcacctccgtcatctgcggc 262
           |||||||||||||||   ||||| ||||  ||||||||||||||||||| ||||
Sbjct: 183 ttcctgccgcgcgccaatgccgtctacggcgaccgcacctccgtcatctacggc 236
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 386   tacgagatgcacttcgcggtgcccatggccgg 417
             ||||||||||||||||||||||| ||||||||
Sbjct: 98692 tacgagatgcacttcgcggtgccgatggccgg 98723



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 209   ttcctgccgcgcgccgccgccgtttacgcggaccgcacctccgtcatctgcggc 262
             |||||||||||||||   ||||| ||||  ||||||||||||||||||| ||||
Sbjct: 98381 ttcctgccgcgcgccaatgccgtctacggcgaccgcacctccgtcatctacggc 98434
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 313   cgccgcgctgcaggcgctcggcgtt 337
             |||||||||||||||||||||||||
Sbjct: 29395 cgccgcgctgcaggcgctcggcgtt 29419
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>ref|NM_191908.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1698

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 208  cttcctgccgcgcgccgccgccg 230
            |||||||||||||||||||||||
Sbjct: 1431 cttcctgccgcgcgccgccgccg 1453
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>gb|AY341855.1| Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds
          Length = 1947

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 208  cttcctgccgcgcgccgccgccg 230
            |||||||||||||||||||||||
Sbjct: 1518 cttcctgccgcgcgccgccgccg 1540
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>gb|AY341844.1| Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds
          Length = 1858

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 208  cttcctgccgcgcgccgccgccg 230
            |||||||||||||||||||||||
Sbjct: 1474 cttcctgccgcgcgccgccgccg 1496
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>tpg|BK005019.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 16 (WRKY16) gene, complete cds
          Length = 4090

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 208  cttcctgccgcgcgccgccgccg 230
            |||||||||||||||||||||||
Sbjct: 3823 cttcctgccgcgcgccgccgccg 3845
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 208      cttcctgccgcgcgccgccgccg 230
                |||||||||||||||||||||||
Sbjct: 27190339 cttcctgccgcgcgccgccgccg 27190317
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>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003E08
          Length = 135014

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 208   cttcctgccgcgcgccgccgccg 230
             |||||||||||||||||||||||
Sbjct: 98017 cttcctgccgcgcgccgccgccg 97995
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>gb|AY870604.1| Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds
          Length = 1840

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 208  cttcctgccgcgcgccgccgccg 230
            |||||||||||||||||||||||
Sbjct: 1498 cttcctgccgcgcgccgccgccg 1520
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>gb|AE012300.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 208
            of 460 of the complete genome
          Length = 12110

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 314  gccgcgctgcaggcgctcggcg 335
            ||||||||||||||||||||||
Sbjct: 3844 gccgcgctgcaggcgctcggcg 3865
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 314     gccgcgctgcaggcgctcggcg 335
               ||||||||||||||||||||||
Sbjct: 2684532 gccgcgctgcaggcgctcggcg 2684511
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>ref|XM_517054.1| PREDICTED: Pan troglodytes similar to Diacylglycerol kinase, theta
           (Diglyceride kinase) (DGK-theta) (DAG kinase theta)
           (LOC461052), mRNA
          Length = 1047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 18  ttcttgctcctgggctcctgg 38
           |||||||||||||||||||||
Sbjct: 263 ttcttgctcctgggctcctgg 283
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   tcctgccgcgcgccgccgccg 230
             |||||||||||||||||||||
Sbjct: 59874 tcctgccgcgcgccgccgccg 59894
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>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0030I07, complete sequence
          Length = 122733

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 210    tcctgccgcgcgccgccgccg 230
              |||||||||||||||||||||
Sbjct: 111855 tcctgccgcgcgccgccgccg 111875
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 312    ccgccgcgctgcaggcgctcg 332
              |||||||||||||||||||||
Sbjct: 228997 ccgccgcgctgcaggcgctcg 229017
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>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216155

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttcttgctcctgggctcctgg 38
             |||||||||||||||||||||
Sbjct: 61681 ttcttgctcctgggctcctgg 61661
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 312     ccgccgcgctgcaggcgctcg 332
               |||||||||||||||||||||
Sbjct: 4776389 ccgccgcgctgcaggcgctcg 4776369
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>gb|AE011645.1| Xanthomonas axonopodis pv. citri str. 306,  section 23 of 469 of the
            complete genome
          Length = 10506

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 314  gccgcgctgcaggcgctcggc 334
            |||||||||||||||||||||
Sbjct: 8923 gccgcgctgcaggcgctcggc 8943
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>gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, complete sequence
          Length = 179402

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gctcctgggctcctggcgagc 43
             |||||||||||||||||||||
Sbjct: 52687 gctcctgggctcctggcgagc 52707
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 210      tcctgccgcgcgccgccgccg 230
                |||||||||||||||||||||
Sbjct: 26649597 tcctgccgcgcgccgccgccg 26649617
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>gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, complete sequence
          Length = 177950

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttcttgctcctgggctcctgg 38
             |||||||||||||||||||||
Sbjct: 48268 ttcttgctcctgggctcctgg 48248
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 252     tcatctgcggcggcaccgcct 272
               |||||||||||||||||||||
Sbjct: 1168702 tcatctgcggcggcaccgcct 1168682
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 312     ccgccgcgctgcaggcgctcg 332
               |||||||||||||||||||||
Sbjct: 4781299 ccgccgcgctgcaggcgctcg 4781279
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 210      tcctgccgcgcgccgccgccg 230
                |||||||||||||||||||||
Sbjct: 26974861 tcctgccgcgcgccgccgccg 26974881
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 192     cgctgagcccggtcaccttc 211
               ||||||||||||||||||||
Sbjct: 1352338 cgctgagcccggtcaccttc 1352357
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    cgcgctgcaggcgctcggcg 335
              ||||||||||||||||||||
Sbjct: 443477 cgcgctgcaggcgctcggcg 443458
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>ref|XM_478701.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 822

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 313 cgccgcgctgcaggcgctcggcgt 336
           |||||||||||||| |||||||||
Sbjct: 768 cgccgcgctgcaggtgctcggcgt 791
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>gb|AY320035.2| Bacteriophage VWB, complete genome
          Length = 49220

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   cgccgcgctgcaggcgctcggcgt 336
             ||||||||||||||| ||||||||
Sbjct: 45318 cgccgcgctgcaggcactcggcgt 45341
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>gb|AC093473.6| Mus musculus chromosome 5, clone RP23-54H12, complete sequence
          Length = 208876

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      cacccacccaccattcttgctcct 28
              ||||||||||||||||||| ||||
Sbjct: 143251 cacccacccaccattcttgttcct 143274
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cgcgctgcaggcgctcggcg 335
               ||||||||||||||||||||
Sbjct: 2917711 cgcgctgcaggcgctcggcg 2917730
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>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome
          Length = 706569

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     cctggcgagctttcatttct 53
              ||||||||||||||||||||
Sbjct: 157882 cctggcgagctttcatttct 157863
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>gb|AY373521.1| Trypanosoma cruzi pumilio protein 4 (PUF-4) gene, complete cds
          Length = 2931

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  acgaatcaatcaacttctga 145
            ||||||||||||||||||||
Sbjct: 1798 acgaatcaatcaacttctga 1779
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>gb|AC127266.4| Mus musculus BAC clone RP24-347B12 from chromosome 5, complete sequence
          Length = 185232

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     cacccacccaccattcttgctcct 28
             ||||||||||||||||||| ||||
Sbjct: 76152 cacccacccaccattcttgttcct 76175
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cgcgctgcaggcgctcggcg 335
               ||||||||||||||||||||
Sbjct: 3959582 cgcgctgcaggcgctcggcg 3959601
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>ref|XM_806056.1| Trypanosoma cruzi strain CL Brener pumilio/PUF RNA binding protein 4
            (Tc00.1047053510073.30) partial mRNA
          Length = 2937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  acgaatcaatcaacttctga 145
            ||||||||||||||||||||
Sbjct: 1798 acgaatcaatcaacttctga 1779
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>ref|XM_812995.1| Trypanosoma cruzi strain CL Brener pumilio/PUF RNA binding protein 4
            (Tc00.1047053509399.190) partial mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  acgaatcaatcaacttctga 145
            ||||||||||||||||||||
Sbjct: 1789 acgaatcaatcaacttctga 1770
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 305    cgcctgtccgccgcgctgcaggcg 328
              ||||||| ||||||||||||||||
Sbjct: 157871 cgcctgtgcgccgcgctgcaggcg 157894
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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence,
            complete sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  cctgccgcgcgccgccgccg 230
            ||||||||||||||||||||
Sbjct: 7246 cctgccgcgcgccgccgccg 7265
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cgcgctgcaggcgctcggcg 335
               ||||||||||||||||||||
Sbjct: 3701484 cgcgctgcaggcgctcggcg 3701503
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>gb|AY129337.1| Mycobacteriophage Bxz1, complete genome
          Length = 156102

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   cggcggcaccgccttcacct 278
             ||||||||||||||||||||
Sbjct: 81889 cggcggcaccgccttcacct 81908
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>gb|AC133336.5| Oryza sativa chromosome 3 BAC OSJNBa0011B06 genomic sequence, complete
             sequence
          Length = 19362

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   cctgccgcgcgccgccgccg 230
             ||||||||||||||||||||
Sbjct: 17469 cctgccgcgcgccgccgccg 17488
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>gb|AC108048.6| Homo sapiens BAC clone RP11-323K3 from 4, complete sequence
          Length = 220568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   atctagcttgatccttcaca 121
             ||||||||||||||||||||
Sbjct: 90432 atctagcttgatccttcaca 90413
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 313      cgccgcgctgcaggcgctcggcgt 336
                |||||||||||||| |||||||||
Sbjct: 22293146 cgccgcgctgcaggtgctcggcgt 22293123
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 313     cgccgcgctgcaggcgctcggcgt 336
               |||||||||| |||||||||||||
Sbjct: 1916559 cgccgcgctggaggcgctcggcgt 1916536
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0567H04
          Length = 181420

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   cgccgcgctgcaggcgctcggcgt 336
             |||||||||||||| |||||||||
Sbjct: 98392 cgccgcgctgcaggtgctcggcgt 98369
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 179     gccaaccacgtgccgctgagcccg 202
               |||||| |||||||||||||||||
Sbjct: 4999470 gccaactacgtgccgctgagcccg 4999493
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>gb|AE005043.1| Halobacterium sp. NRC-1 section 74 of 170 of the complete genome
          Length = 11677

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  gccgcgctgcaggcgctcgg 333
            ||||||||||||||||||||
Sbjct: 9692 gccgcgctgcaggcgctcgg 9673
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>gb|U58846.1|NGU58846 Neisseria gonorrhoeae pilS1 silent pilus locus
          Length = 4480

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 cggaccgcacctccgtcatctgcg 260
           |||||||| |||||||||||||||
Sbjct: 393 cggaccgcccctccgtcatctgcg 416
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>gb|AC004825.2|AC004825 Homo sapiens PAC clone RP1-292L20 from 14q24.3, complete sequence
          Length = 124221

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    cttgctcctgggctcctggc 39
             ||||||||||||||||||||
Sbjct: 83157 cttgctcctgggctcctggc 83176
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>emb|AL445903.3|CNS07EEU Human chromosome 14 DNA sequence BAC R-164G17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145556

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     cttgctcctgggctcctggc 39
              ||||||||||||||||||||
Sbjct: 131669 cttgctcctgggctcctggc 131688
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 237     cggaccgcacctccgtcatctgcg 260
               |||||||| |||||||||||||||
Sbjct: 2047947 cggaccgcccctccgtcatctgcg 2047924
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>emb|CT030705.12| Mouse DNA sequence from clone RP23-118N11 on chromosome 13, complete
            sequence
          Length = 125516

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   cttgctcctgggctcctggc 39
            ||||||||||||||||||||
Sbjct: 1357 cttgctcctgggctcctggc 1376
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cgcgctgcaggcgctcggcg 335
               ||||||||||||||||||||
Sbjct: 3400604 cgcgctgcaggcgctcggcg 3400623
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>emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chromosome 13, complete
              sequence
          Length = 184172

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     cttgctcctgggctcctggc 39
              ||||||||||||||||||||
Sbjct: 183529 cttgctcctgggctcctggc 183548
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>dbj|AP006361.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT46P17, TM0137,
             complete sequence
          Length = 102271

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   acacgtgacgaatcaatcaa 138
             ||||||||||||||||||||
Sbjct: 99891 acacgtgacgaatcaatcaa 99872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,187,676
Number of Sequences: 3902068
Number of extensions: 3187676
Number of successful extensions: 63732
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60856
Number of HSP's gapped (non-prelim): 2876
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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