>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 768

 Score = 37.0 bits (84), Expect = 0.028
 Identities = 24/80 (30%), Positives = 30/80 (37%)
 Frame = +2

Query: 68  PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 247
           P +     CQSLE  P G MA  +P+A            +P      S+T    G G W 
Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312

Query: 248 LWTRTSAPASSPTARWCRPP 307
                S P  +  A  C PP
Sbjct: 313 -----SEPLPTCEAIACEPP 327

>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP|
          Length = 552

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = +1

Query: 91  LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENPWDGLLDPL------ 252
           +P+   I + +   E+  GDDTT P  AR   T    W  +  + P+ G   P       
Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306

Query: 253 ----DPHLRSSIISYGEMVQA-AYDGF 318
                 H +  +  YG ++Q+  Y+GF
Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333

>RPOL_BPK11 (P18147) DNA-directed RNA polymerase (EC 2.7.7.6)|
          Length = 906

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
 Frame = +1

Query: 139 PRGDDTTPP----APARVLGTVASRWRELHGENPWDGLLDPLDPHLRSSIISYGEMVQAA 306
           P+G+D T      A  + +G     W ++HG N       P    ++    + G ++ +A
Sbjct: 457 PQGNDMTKGSLTLAKGKPIGLDGFYWLKIHGANCAGVDKVPFPERIKFIEENEGNILASA 516

Query: 307 YDGFN----TERRSPHCGACF-YAYEDLLAGVGVPHHGNNY 414
            D  N    T++ SP C   F + Y       GV HHG NY
Sbjct: 517 ADPLNNTWWTQQDSPFCFLAFCFEY------AGVKHHGLNY 551

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 74  RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 250
           RSS +HC+  L+  P G      PVA         +SS   PA  ++S A +  +GS T 
Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557

Query: 251 WTRTSAPASSPTARWCRPPTTG 316
             + S   S  TA   RPP  G
Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577

>MTC3_PBCVC (P10835) Modification methylase CviBIII (EC 2.1.1.72)|
           (Adenine-specific methyltransferase CviBIII) (M.CviBIII)
          Length = 377

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 328 RRSPHCGACFYAYEDLLAGVGVPHHGNNY 414
           + SP  G   Y Y D +    +PHHGN+Y
Sbjct: 211 KNSPGTGK--YTYRDYICDKDIPHHGNSY 237

>Y3680_PSEAE (Q9HXW0) UPF0341 protein PA3680|
          Length = 261

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +1

Query: 127 GQEKPRGDDTTPPAPARVL---GTVASRWRELHGENPWDGLLDPLDPHLRSSIISYGEM 294
           G E+ R D    P  AR+    G  A   R   GE P    LDP+ PH   S +   EM
Sbjct: 137 GLERARRDPDVAPIAARMRLLGGNSADLMRAWDGEAPQVVYLDPMFPHRDKSALVKKEM 195

>VIVD_BPT7 (P03726) Internal virion protein D|
          Length = 1318

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +1

Query: 94   PIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENPWDGLLDPLDPHLRSS 273
            P   DI  RL      R    T PA A ++GT+    +EL   +PW  LL+    +L  +
Sbjct: 946  PKRADIVQRL------REATDTGPAVANIVGTLKYSTQELAARSPWTKLLNGTTNYLLDA 999

Query: 274  IIS--YGEMVQAAYDGFNT 324
                  G+++ A   G  T
Sbjct: 1000 ARQGMLGDVISATLTGKTT 1018

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 74  RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 250
           RSS +HC+ +L+  P G     +P A          SS   PA  + S + +  +GS T 
Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556

Query: 251 WTRTSAPASSPTARWCRPPTTG 316
            T+ S   S  TA   RPP  G
Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 24  QHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPRETPWRRHD 158
           +H    D    HL+RHV P D   ++ R+   +    +   RRHD
Sbjct: 448 RHDSHRDHERHHLSRHVRPSDEGESKCRYEAHSHTRHDEHTRRHD 492

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
 Frame = +2

Query: 8   RRQW*AAHRSRRSHELTPRAPCRSSR----SHCQSLET*PAGCMAKRNPVATTXXXXXXX 175
           RR     HR R S   T  +   SS     S   S  T  A    +  P           
Sbjct: 149 RRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPP 208

Query: 176 ASSEPWP--------AGGAS-STARTRGMGSWTLWTRTSAPASSPTARWCRPP 307
           + + PWP        AG AS +T RTR   SW+  +  SA  ++   R   PP
Sbjct: 209 SRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPP 261

>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 412

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 318 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 187
           +P+V G  ++   D    E  V  + +P P+V A+ L P  G G
Sbjct: 163 DPLVPGFAYVPYNDLGALEALVASLDQPQPQVAAILLEPLQGEG 206

>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 427

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 318 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 187
           +P+V G H++   D +  E  +  + E   RV A+ + P  G G
Sbjct: 178 DPLVPGFHYVNYNDISAVEAAISELDEGDYRVAAILIEPLQGEG 221

>MYCL1_MOUSE (P10166) L-myc-1 proto-oncogene protein|
          Length = 368

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 185 EPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 295
           EPWP GGA   A +RG      W R  A        W
Sbjct: 62  EPWPGGGAGDEAESRGHSK--AWGRNYASIIRRDCMW 96

>Y268_CHLMU (Q9PL40) Hypothetical protein TC0268|
          Length = 614

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 100 VGDIASRLHGQEKPRGDDTTPPAPA-----RVLGTVASRWRELHGENPWDGLLDPLDPHL 264
           VG I  +  G E+  G   T  +P+     R++ T   R+R LH   P DGL   LD   
Sbjct: 137 VGSIFPQRAGAEQRTGKARTKYSPSASRGLRLMFTDFWRYRVLHRNPPMDGLFAKLDADE 196

Query: 265 RSSIISY 285
              + +Y
Sbjct: 197 AEDMAAY 203

>SYWM_CAEEL (P46579) Probable tryptophanyl-tRNA synthetase, mitochondrial (EC|
           6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS)
          Length = 650

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -1

Query: 130 GHAACWLCLQRLAVG--SGGTTWRARC 56
           GH  CW C+Q  AV   S  +T  ARC
Sbjct: 270 GHLFCWTCIQEHAVAATSSASTSSARC 296

>ARGD_PROMA (Q7VAS9) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 395

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 324 GVEPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 187
           G EP+V G    +  D    +   + +++  PRV A+ + P  G G
Sbjct: 144 GFEPLVEGFEFFSFNDSNSVQDLYENLEKDEPRVAAILIEPIQGEG 189

>Y1513_PSEPK (Q88MQ7) UPF0341 protein PP1513|
          Length = 258

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 127 GQEKPRGDDTTPPAPARV---LGTVASRWRELHGENPWDGLLDPLDPHLRSSIISYGEM 294
           G  + R D+   P   R+    G    R R   GE P    LDP+ PH   S +   EM
Sbjct: 135 GLARARADEEVGPIVGRMRLLTGNAIERMRAWEGEAPQVIYLDPMFPHRDKSALVKKEM 193

>IGHE_MOUSE (P06336) Ig epsilon chain C region|
          Length = 421

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 35  SRRSHELTPRAPCRSSRSHCQSLET*PAGCMAKR---NPVATTXXXXXXXASSEPWPAGG 205
           S R+ +L P  PC+ + S          GC+ K    NPV  T        S+  +PA G
Sbjct: 1   SIRNPQLYPLKPCKGTASMT-------LGCLVKDYFPNPVTVTWYSDSLNMSTVNFPALG 53

Query: 206 ASSTARTRGMGSW 244
           +     T  + SW
Sbjct: 54  SELKVTTSQVTSW 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,256,333
Number of Sequences: 219361
Number of extensions: 1260467
Number of successful extensions: 4036
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4033
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)