Clone Information

BLAST Search Result

Clone Name	bast47b11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSB4_ARATH (Q7DLR9) Proteasome subunit beta type 4 precursor (EC...	164	7e-41
2	PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC ...	96	4e-20
3	PSB4_XENLA (P28024) Proteasome subunit beta type 4 precursor (EC...	89	5e-18
4	PSB4_PIG (Q29384) Proteasome subunit beta type 4 precursor (EC 3...	88	1e-17
5	PSB4_HUMAN (P28070) Proteasome subunit beta type 4 precursor (EC...	87	2e-17
6	PSB4_RAT (P34067) Proteasome subunit beta type 4 precursor (EC 3...	86	4e-17
7	PSB4_MOUSE (P99026) Proteasome subunit beta type 4 precursor (EC...	86	5e-17
8	PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC ...	82	6e-16
9	PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Mac...	75	7e-14
10	PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25...	47	2e-05
11	PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25...	45	1e-04
12	PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25...	44	2e-04
13	PSB7A_ARATH (O23710) Proteasome subunit beta type 7-A precursor ...	38	0.012
14	PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor ...	38	0.012
15	PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 prec...	36	0.046
16	PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4....	35	0.061
17	PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (...	35	0.079
18	PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3...	35	0.079
19	PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC...	35	0.079
20	PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC...	35	0.079
21	PSB10_HUMAN (P40306) Proteasome subunit beta type 10 precursor (...	35	0.10
22	PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25...	34	0.18
23	IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASP...	33	0.39
24	CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding ...	33	0.39
25	PALA_EMENI (P79020) pH-response regulator protein palA/RIM20	33	0.39
26	PSB2_NEUCR (Q9P6U7) Probable proteasome subunit beta type 2 (EC ...	32	0.51
27	PSB6_YEAST (P38624) Proteasome component PRE3 precursor (EC 3.4....	32	0.51
28	CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96	32	0.51
29	PSB2_CRYNE (Q00826) Probable proteasome subunit beta type 2 (EC ...	32	0.67
30	NO12A_PEA (P20799) Early nodulin 12A precursor (N-12A)	32	0.87
31	HSLV_BRUSU (Q8FY11) ATP-dependent protease hslV (EC 3.4.25.-)	31	1.1
32	HSLV_BRUME (Q8YE31) ATP-dependent protease hslV (EC 3.4.25.-)	31	1.1
33	WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protei...	30	1.9
34	WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei...	30	1.9
35	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	30	1.9
36	PSB2_YEAST (P22141) Proteasome component C11 (EC 3.4.25.1) (Macr...	30	1.9
37	PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2	30	1.9
38	CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-bindin...	30	1.9
39	PSB2_ORYSA (Q9LST6) Proteasome subunit beta type 2 (EC 3.4.25.1)...	30	1.9
40	MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-...	30	2.5
41	FA44A_HUMAN (Q8NFC6) Protein FAM44A	30	3.3
42	MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated prote...	30	3.3
43	2A5D_HUMAN (Q14738) Serine/threonine-protein phosphatase 2A 56 k...	30	3.3
44	PSB2A_ARATH (O23714) Proteasome subunit beta type 2-A (EC 3.4.25...	29	4.3
45	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	29	4.3
46	PSB2B_ARATH (O24633) Proteasome subunit beta type 2-B (EC 3.4.25...	29	4.3
47	HXA10_MORSA (Q9PWD6) Homeobox protein Hox-A10	29	4.3
48	2A5D_RABIT (Q28653) Serine/threonine-protein phosphatase 2A 56 k...	29	4.3
49	IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 s...	29	4.3
50	TREF1_MOUSE (Q8BXJ2) Transcriptional-regulating factor 1 (Transc...	29	5.7
51	SCA4_RICJA (Q9AJ79) Antigenic heat-stable 120 kDa protein (PS120...	29	5.7
52	TAMO_DROME (Q9W1A4) Protein tamozhennic	29	5.7
53	DPO3_CLOTE (Q895K2) DNA polymerase III polC-type (EC 2.7.7.7) (P...	29	5.7
54	ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: ...	29	5.7
55	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	29	5.7
56	CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-bindin...	29	5.7
57	PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer ...	29	5.7
58	PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ...	28	7.4
59	HSLV_BARQU (Q6G0Q0) ATP-dependent protease hslV (EC 3.4.25.-)	28	7.4
60	HSLV_BARHE (Q6G5G1) ATP-dependent protease hslV (EC 3.4.25.-)	28	7.4
61	HSLV_RHOPA (P61477) ATP-dependent protease hslV (EC 3.4.25.-)	28	7.4
62	CCNK_MOUSE (O88874) Cyclin-K	28	7.4
63	VP03_SHV21 (Q01000) Probable membrane antigen 3 (Tegument protein)	28	7.4
64	TRA2_PSEFL (Q51761) Putative transposase for insertion sequence ...	28	7.4
65	ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate...	28	7.4
66	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	28	7.4
67	PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor t...	28	7.4
68	HSLV_AGRT5 (Q8UJ88) ATP-dependent protease hslV (EC 3.4.25.-)	28	7.4
69	MURD_SHIFL (Q83MF9) UDP-N-acetylmuramoylalanine--D-glutamate lig...	28	9.7
70	ATR_CANAL (Q59LR2) Serine/threonine-protein kinase MEC1 (EC 2.7....	28	9.7
71	PCQAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associ...	28	9.7
72	PALA_NEUCR (Q7S532) pH-response regulator protein palA/rim-20	28	9.7
73	SEL1L_HUMAN (Q9UBV2) Sel-1 homolog precursor (Suppressor of lin-...	28	9.7
74	ACFD_ECOLI (Q46837) Putative lipoprotein acfD homolog precursor	28	9.7

>PSB4_ARATH (Q7DLR9) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome subunit beta type 7) (20S proteasome beta
           subunit G-1) (Proteasome component H)
          Length = 246

 Score =  164 bits (416), Expect = 7e-41
 Identities = 75/95 (78%), Positives = 86/95 (90%)
 Frame = +1

Query: 151 TQRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEF 330
           +QRTL PYVTG S++A+KYKDGV+MA D G SYGSTLRYK++ER+K +GKHSL+G SGE 
Sbjct: 21  SQRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEI 80

Query: 331 SDFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           SDFQEILRYLDELTLND+MWDDGNSLGPKEIH YL
Sbjct: 81  SDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYL 115

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>PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC 3.4.25.1)|
          Length = 262

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 44/94 (46%), Positives = 67/94 (71%)
 Frame = +1

Query: 154 QRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFS 333
           QRT+ P VTG+SV+A+K+ DGV++A D  ASYGS  R+  VER+ +VG ++++G  G+ S
Sbjct: 34  QRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDIS 93

Query: 334 DFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           D+Q+I R L++L + +  + DG +L P  IH YL
Sbjct: 94  DYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYL 127

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>PSB4_XENLA (P28024) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome beta chain) (Macropain beta chain)
           (Multicatalytic endopeptidase complex beta chain)
           (Proteasome chain 3) (Fragment)
          Length = 242

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 36/94 (38%), Positives = 68/94 (72%)
 Frame = +1

Query: 154 QRTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFS 333
           + TLNP VTG SV+ +K+  GVI+A D   SYGS  R++++ RI +V +++++G SG+++
Sbjct: 22  RHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYA 81

Query: 334 DFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           D+Q + + +D++ +++ +  DG++  PK IH++L
Sbjct: 82  DYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWL 115

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>PSB4_PIG (Q29384) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome beta chain) (Macropain beta chain)
           (Multicatalytic endopeptidase complex beta chain)
           (Proteasome chain 3) (Fragment)
          Length = 154

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 37/93 (39%), Positives = 64/93 (68%)
 Frame = +1

Query: 157 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           RT NP VTG SV+ +K++ GV++A D   SYGS  R++++ RI  V   +++G SG+++D
Sbjct: 45  RTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYAD 104

Query: 337 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           FQ + + L ++ +++ +  DG+S  PK IH++L
Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWL 137

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>PSB4_HUMAN (P28070) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome beta chain) (Macropain beta chain)
           (Multicatalytic endopeptidase complex beta chain)
           (Proteasome chain 3) (HSN3) (HsBPROS26)
          Length = 264

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 36/93 (38%), Positives = 64/93 (68%)
 Frame = +1

Query: 157 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           RT NP VTG SV+ +K++ GV++A D   SYGS  R++++ RI  V   +++G SG+++D
Sbjct: 45  RTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYAD 104

Query: 337 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           FQ + + L ++ +++ +  DG+S  P+ IH++L
Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWL 137

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>PSB4_RAT (P34067) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome beta chain) (Macropain beta chain)
           (Multicatalytic endopeptidase complex beta chain)
           (Proteasome chain 3) (RN3)
          Length = 263

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 36/93 (38%), Positives = 64/93 (68%)
 Frame = +1

Query: 157 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           RT NP VTG SV+ +K+  GV++A D   SYGS  R++++ RI  V   +++G SG+++D
Sbjct: 44  RTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYAD 103

Query: 337 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           FQ + + L ++ +++ ++ DG+S  P+ IH++L
Sbjct: 104 FQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWL 136

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>PSB4_MOUSE (P99026) Proteasome subunit beta type 4 precursor (EC 3.4.25.1)|
           (Proteasome beta chain) (Macropain beta chain)
           (Multicatalytic endopeptidase complex beta chain)
           (Proteasome chain 3)
          Length = 264

 Score = 85.5 bits (210), Expect = 5e-17
 Identities = 36/93 (38%), Positives = 63/93 (67%)
 Frame = +1

Query: 157 RTLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           RT NP VTG SV+ +K+  GV++A D   SYGS  R++++ RI  V   +++G SG+++D
Sbjct: 45  RTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYAD 104

Query: 337 FQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           FQ + + L ++ +++ +  DG+S  P+ IH++L
Sbjct: 105 FQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWL 137

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>PSB4_DROME (Q9VNA5) Probable proteasome subunit beta type 4 (EC 3.4.25.1)|
          Length = 268

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
 Frame = +1

Query: 160 TLNPY---------VTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLI 312
           T+ PY          TG SV+ ++Y  GV++A DT  SYGS  RY+++ER+ +V K+ L+
Sbjct: 41  TMGPYGTKHSTASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL 100

Query: 313 GGSGEFSDFQEILRYLDELTLNDHMWDDGNSLGPKEIHAYL 435
           GGSG+F+D Q I R +D+  + D   DD   + PK + +++
Sbjct: 101 GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWM 141

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>PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Macropain subunit|
           PRE4) (Proteinase YSCE subunit PRE4) (Multicatalytic
           endopeptidase complex subunit PRE4)
          Length = 266

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
 Frame = +1

Query: 160 TLNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDF 339
           T  P VTG SVI+MKY +GVI+A D   SYGS LR+  VER+  VG ++++G SG+ SD 
Sbjct: 34  TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDM 93

Query: 340 QEILRYLDEL----TLNDHMWDDGNSLGPKEIHAYL 435
           Q I R L +L      ++ + D   +L P  I  YL
Sbjct: 94  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 129

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>PSMB_PYRFU (Q8U125) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 206

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 39/66 (59%)
 Frame = +1

Query: 163 LNPYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQ 342
           L   + G + + +  K+GV++A DT AS G+ +  K+V +I ++ +H  I G+G+  D  
Sbjct: 4   LKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDIL 63

Query: 343 EILRYL 360
            ++R L
Sbjct: 64  NLVRLL 69

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>PSMB_PYRHO (O50110) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 207

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 360
           G + + +  KDGV++A D  AS G+ +  ++V +I ++ +H  I G+G+  D   ++R L
Sbjct: 10  GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69

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>PSMB_PYRAB (Q9V0N9) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 207

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 360
           G + + +   DGV++A D  AS G+ +  K+V +I ++ +H  I G+G+  D   ++R L
Sbjct: 10  GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69

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>PSB7A_ARATH (O23710) Proteasome subunit beta type 7-A precursor (EC 3.4.25.1)|
           (Proteasome subunit beta type 2) (20S proteasome beta
           subunit B-1) (Proteasome component FA) (Proteasome
           component FB)
          Length = 273

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 348
           TG +++ + +KDGVI+  DT A+ G  +  K+ E+I  +  +    G+G  +D + +
Sbjct: 38  TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94

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>PSB7B_ARATH (Q7DLS1) Proteasome subunit beta type 7-B precursor (EC 3.4.25.1)|
           (Proteasome subunit beta type 2) (20S proteasome beta
           subunit B-2) (Proteasome component FC)
          Length = 274

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 348
           TG +++ + +KDGVI+  DT A+ G  +  K+ E+I  +  +    G+G  +D + +
Sbjct: 38  TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94

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>PSB6_SCHPO (O43063) Probable proteasome subunit beta type 6 precursor (EC|
           3.4.25.1)
          Length = 226

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQ---EIL 351
           G ++ A++YKDGVI+A D+  + G+ +  +  +++ ++  +     SG  +D Q   ++L
Sbjct: 24  GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83

Query: 352 RY 357
           +Y
Sbjct: 84  KY 85

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>PSB7_YEAST (P25043) Proteasome component PUP1 precursor (EC 3.4.25.1)|
           (Macropain subunit PUP1) (Proteinase YSCE subunit PUP1)
           (Multicatalytic endopeptidase complex subunit PUP1)
          Length = 261

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 13/61 (21%), Positives = 34/61 (55%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRY 357
           TG +++ +K+ +GV++A DT ++ G  +  K+  ++  +       G+G  +D + + + 
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87

Query: 358 L 360
           +
Sbjct: 88  I 88

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>PSB10_MOUSE (O35955) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)|
           (Proteasome MECl-1) (Macropain subunit MECl-1)
           (Multicatalytic endopeptidase complex subunit MECl-1)
          Length = 273

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILR 354
           TG ++  + ++DGVI+  DT A+  S +  KS E+I  +       G+G  +D +   R
Sbjct: 38  TGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTR 96

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>PSB7_RAT (Q9JHW0) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           TG ++  + YKDG+++  DT A+ G  +  K+  +I  +  +    G+G  +D
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94

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>PSB7_MOUSE (P70195) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           TG ++  + YKDG+++  DT A+ G  +  K+  +I  +  +    G+G  +D
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94

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>PSB7_HUMAN (Q99436) Proteasome subunit beta type 7 precursor (EC 3.4.25.1)|
           (Proteasome subunit Z) (Macropain chain Z)
           (Multicatalytic endopeptidase complex chain Z)
          Length = 277

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSD 336
           TG ++  + YKDG+++  DT A+ G  +  K+  +I  +  +    G+G  +D
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAAD 94

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>PSB10_HUMAN (P40306) Proteasome subunit beta type 10 precursor (EC 3.4.25.1)|
           (Proteasome MECl-1) (Macropain subunit MECl-1)
           (Multicatalytic endopeptidase complex subunit MECl-1)
          Length = 273

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 178 TGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILR 354
           TG ++  + ++DGVI+  DT A+  S +  KS E+I  +       G+G  +D +   R
Sbjct: 38  TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTR 96

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>PSMB_ARCFU (Q9P996) Proteasome beta subunit precursor (EC 3.4.25.1)|
           (Multicatalytic endopeptidase complex beta subunit)
          Length = 213

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 360
           G + + +  KDGV+MA +  A+ G+ +  K+ ++I ++     +  +G   D Q + R +
Sbjct: 11  GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARII 70

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>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)|
           (Protein iASPP) (PPP1R13B-like protein)
           (NFkB-interacting protein 1)
          Length = 828

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   RIQRERDHHPQPQPQPSRGLPPTSETKPHQP 95
           ++Q +    PQPQ QP   LPP  +T+P  P
Sbjct: 405 KLQPQPQPQPQPQSQPQPQLPPQPQTQPQTP 435

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>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 737

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPTRTD 110
           PQPQPQP    PP ++ +  +PP RT+
Sbjct: 644 PQPQPQPVAPAPPPAKKRRGRPPGRTN 670

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>PALA_EMENI (P79020) pH-response regulator protein palA/RIM20|
          Length = 847

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPTRT 107
           PQPQP PS+ +PP S+ +P   P RT
Sbjct: 773 PQPQP-PSQAIPPQSQPQPQPQPLRT 797

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>PSB2_NEUCR (Q9P6U7) Probable proteasome subunit beta type 2 (EC 3.4.25.1)|
          Length = 203

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 208 KDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRY 357
           KD  I+A    A  G+T+   S ++ + + KH+L+  SGE  D  +   Y
Sbjct: 10  KDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEY 59

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>PSB6_YEAST (P38624) Proteasome component PRE3 precursor (EC 3.4.25.1)|
           (Macropain subunit PRE3) (Proteinase YSCE subunit PRE3)
           (Multicatalytic endopeptidase complex subunit PRE3)
          Length = 215

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEI 348
           G S++A+ +KDGVI+  D+  + G+ +  +  +++  V        SG  +D Q I
Sbjct: 19  GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 74

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>CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96|
          Length = 584

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 15  ERDHHPQPQPQPSRGLPPTSETKP 86
           E++  P+P+P+P++G  P SET+P
Sbjct: 39  EQEPEPKPEPEPTQGREPESETQP 62

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>PSB2_CRYNE (Q00826) Probable proteasome subunit beta type 2 (EC 3.4.25.1)|
          Length = 224

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 208 KDGVIMACDTGASYGSTLRYKSVE-RIKEVGKHSLIGGSGEFSDFQEILRYLD 363
           KD VI+A D GA   S +R KS E ++K +G H  +  SGE  D      Y++
Sbjct: 10  KDYVILASDMGAG-RSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIE 61

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>NO12A_PEA (P20799) Early nodulin 12A precursor (N-12A)|
          Length = 110

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 9   QRERDHHPQPQPQPSRGLPPTSETKPHQPP 98
           Q+E   H  PQ +P R  PP  E   H+PP
Sbjct: 56  QKETPVHKPPQKEPPRHKPPQKEPPRHKPP 85

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>HSLV_BRUSU (Q8FY11) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 184

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 166 NPYVTGNSVIAMKYKDG-VIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG-SGEFSDF 339
           NP     + I    KDG V++A D   S G+T+   +  +++ +GK ++I G +G  +D 
Sbjct: 5   NPTTIYGTTIVTVRKDGKVVIAGDGQVSLGNTVMKGNARKVRRIGKGNVIAGFAGATADA 64

Query: 340 QEILRYLD 363
             +L  L+
Sbjct: 65  FTLLERLE 72

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>HSLV_BRUME (Q8YE31) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 184

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 166 NPYVTGNSVIAMKYKDG-VIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG-SGEFSDF 339
           NP     + I    KDG V++A D   S G+T+   +  +++ +GK ++I G +G  +D 
Sbjct: 5   NPTTIYGTTIVTVRKDGKVVIAGDGQVSLGNTVMKGNARKVRRIGKGNVIAGFAGATADA 64

Query: 340 QEILRYLD 363
             +L  L+
Sbjct: 65  FTLLERLE 72

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>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related|
           protein)
          Length = 440

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  RDHHPQPQPQPSRGLPPTSETKPHQPPTRT 107
           RD  P P P    G  P S  KP  PP+RT
Sbjct: 337 RDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366

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>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 18  RDHHPQPQPQPSRGLPPTSETKPHQPPTRT 107
           RD  P P P    G  P S  KP  PP+RT
Sbjct: 337 RDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 15  ERDHHPQPQPQPSRGLPPTSETKPHQPP 98
           ++   P PQ  P +  PP  +  PHQPP
Sbjct: 65  QQQQQPPPQQPPPQQPPPHQQPPPHQPP 92

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>PSB2_YEAST (P22141) Proteasome component C11 (EC 3.4.25.1) (Macropain subunit|
           C11) (Proteinase YSCE subunit 11) (Multicatalytic
           endopeptidase complex subunit C11)
          Length = 198

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 190 VIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYL 360
           ++ ++ +D VI+A     + G ++   S ++ +++  H+L+  +GE  D  +   Y+
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYI 60

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>PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2|
          Length = 691

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +3

Query: 9   QRERDHHPQP-----QPQPSRGLPPTSE-TKPHQPP 98
           Q+++   P P      PQP+   PP S+ T PHQPP
Sbjct: 192 QQQQQQQPPPPPTSQHPQPASQAPPQSQPTPPHQPP 227

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>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 727

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPTRTD 110
           P+P+PQP    PP ++ +  +PP RT+
Sbjct: 634 PEPEPQPVTPAPPPAKKRRGRPPGRTN 660

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>PSB2_ORYSA (Q9LST6) Proteasome subunit beta type 2 (EC 3.4.25.1) (20S|
           proteasome alpha subunit D) (20S proteasome subunit
           beta-4)
          Length = 212

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 190 VIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDEL 369
           VI +  +D  ++A DT A     +     +++  +  H L+G SGE  D  +   ++ + 
Sbjct: 4   VIGVVGRDIAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQK- 62

Query: 370 TLNDHMWDDGNSL 408
             N H++   N++
Sbjct: 63  --NLHLYQFRNNI 73

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>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding|
           protein MBD5)
          Length = 1494

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 333 TELPTPSNKAMLSNLLDTLHTLVSQG*PIRGSSITCHDHTILVFHCNHRVTSH 175
           T LP  +N+   ++   ++++ V Q  P+RG ++ CH+      H N  V +H
Sbjct: 728 TALPCSANQLHFTD--PSMNSSVLQNIPLRGEAVHCHNANTNFVHSNSPVPNH 778

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>FA44A_HUMAN (Q8NFC6) Protein FAM44A|
          Length = 502

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 27 HPQPQPQPSRGLPPTSETKPHQPP 98
          +PQPQP P    PP  + +P  PP
Sbjct: 4  NPQPQPPPPAPPPPPPQPQPQPPP 27

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>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1|
           (Transducer of regulated cAMP response element-binding
           protein 1) (Transducer of CREB protein 1)
          Length = 634

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPP 98
           P PQPQP    PP S+  P  PP
Sbjct: 363 PPPQPQPPPPPPPASQQPPPPPP 385

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>2A5D_HUMAN (Q14738) Serine/threonine-protein phosphatase 2A 56 kDa regulatory|
           subunit delta isoform (PP2A, B subunit, B' delta
           isoform) (PP2A, B subunit, B56 delta isoform) (PP2A, B
           subunit, PR61 delta isoform) (PP2A, B subunit, R5 delta
           isoform)
          Length = 602

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +3

Query: 15  ERDHHPQPQPQP-SRGLPPTSETKPHQ---PPTR 104
           E    PQPQPQP ++  PP+S  +P     PPT+
Sbjct: 35  EAQPQPQPQPQPQAQSQPPSSNKRPSNSTPPPTQ 68

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>PSB2A_ARATH (O23714) Proteasome subunit beta type 2-A (EC 3.4.25.1) (Proteasome|
           subunit beta type 4) (20S proteasome beta subunit D-1)
           (Proteasome component GB)
          Length = 204

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 220 IMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDE 366
           I+A DT A +   L   + ++I  +  H L+  SGE  D  +   Y+ +
Sbjct: 14  IVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQK 62

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 24  HHPQPQPQPSRGLPPTSETKPHQPP 98
           H  Q QP P +  PP  +  PHQPP
Sbjct: 66  HQQQQQPPPQQ--PPPQQPPPHQPP 88

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>PSB2B_ARATH (O24633) Proteasome subunit beta type 2-B (EC 3.4.25.1) (Proteasome|
           subunit beta type 4) (20S proteasome beta subunit D-2)
           (Proteasome component GA)
          Length = 199

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 220 IMACDTGASYGSTLRYKSVERIKEVGKHSLIGGSGEFSDFQEILRYLDE 366
           I+A DT A +   L     ++I  +  H L+  SGE  D  +   Y+ +
Sbjct: 14  IVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQK 62

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>HXA10_MORSA (Q9PWD6) Homeobox protein Hox-A10|
          Length = 289

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 36  PQPQPSR---GLPPTSETKPHQPPTRT 107
           PQP PS    GL PT+  + H PPT T
Sbjct: 111 PQPNPSHSHFGLHPTAPARFHTPPTST 137

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>2A5D_RABIT (Q28653) Serine/threonine-protein phosphatase 2A 56 kDa regulatory|
           subunit delta isoform (PP2A, B subunit, B' delta
           isoform) (PP2A, B subunit, B56 delta isoform) (PP2A, B
           subunit, PR61 delta isoform) (PP2A, B subunit, R5 delta
           isoform) (PP2A,
          Length = 586

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 15  ERDHHPQPQPQPS-RGLPPTSETKPHQ---PPTR 104
           E    PQPQPQP  +  PP+S  +P     PPT+
Sbjct: 19  EAQPQPQPQPQPQPQSQPPSSNKRPSNSTPPPTQ 52

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>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma)
          Length = 352

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = +3

Query: 9   QRERDHHPQPQPQPSRGLPPTSET------KPHQPPTRTD 110
           QR +  + Q Q   SRG PP  E       KPHQPP R D
Sbjct: 279 QRRQQENMQRQ---SRGEPPLPEEDLSKLFKPHQPPARMD 315

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>TREF1_MOUSE (Q8BXJ2) Transcriptional-regulating factor 1|
           (Transcriptional-regulating protein 132) (Zinc finger
           transcription factor TReP-132)
          Length = 1205

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPP 98
           PQPQPQP + LPP     P  PP
Sbjct: 556 PQPQPQPQQPLPPPPPPPP--PP 576

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>SCA4_RICJA (Q9AJ79) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa|
           antigen) (Protein PS 120) (rps120)
          Length = 1018

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = -2

Query: 342 LEITELPTPSNKAMLSNLLDTLHTLVSQG*PIR-------GSSITCHDHTILVFHCNHRV 184
           L  TEL T + +A++SN+LD   T   +G  I+       GSS+  HD   ++   +  +
Sbjct: 637 LSNTELKTTNIQAIISNVLDGPATAEVKGEIIQEITNTVAGSSLEAHDKAAIIKGISETI 696

Query: 183 TSH 175
            +H
Sbjct: 697 ATH 699

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>TAMO_DROME (Q9W1A4) Protein tamozhennic|
          Length = 797

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -1

Query: 400 SHHPTYDRSKLIHPDSAKSPGNH*TPHSLQ*GYAFQPP*YAPHSCIARLTHKRL--QYHM 227
           +HHP+   +  +HP+     G +  P+         PP   PH     +TH R    Y  
Sbjct: 247 AHHPSSSGTCALHPNGLNEAGKYLPPYP-------APPPQQPHLPGPLMTHSRSLDHYQE 299

Query: 226 P*SHHP 209
           P +H P
Sbjct: 300 PQAHLP 305

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>DPO3_CLOTE (Q895K2) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1427

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 202 KYKDGVIM--ACDTGASYGSTLRYKSVERIKEV 294
           KY++G+++  AC+ G  Y   L  KS E +KEV
Sbjct: 642 KYREGLMIGSACEAGQVYKEVLMDKSKEELKEV 674

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>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 431

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 27  HPQPQPQPSRGLPPTSETKPHQPP 98
           HP P P P    PP ++  P  PP
Sbjct: 334 HPHPHPHPRPPQPPAAQAPPPPPP 357

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>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   QRERDHHPQPQPQPSRGLPPTSETKPHQPP 98
           Q    HH  P+PQP    PP  E    +PP
Sbjct: 84  QEAHQHHQPPEPQPYYPPPPPGEHMHGRPP 113

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>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 736

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 6   IQRERDHHPQPQP----QPSRGLPPTSETKPHQPPTRTD 110
           ++ E +  PQPQP    QP    PP ++ +  +PP RT+
Sbjct: 631 VEIEPEPEPQPQPPPPPQPVAPAPPPAKKRRGRPPGRTN 669

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>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane|
           protein P.70]
          Length = 922

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPTR 104
           PQP PQP +   P    +P QPP R
Sbjct: 579 PQPGPQPPQPPQPPQPPQPPQPPQR 603

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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14) (Fragment)
          Length = 1499

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPP 98
           PQPQPQP    PP  + +P   P
Sbjct: 796 PQPQPQPQPQPPPQPQPQPQPQP 818

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>HSLV_BARQU (Q6G0Q0) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 193

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLI--GGSGEFSDFQEILR 354
           G ++I ++    V++A D   S+G T+   +  +++ +GK   +  G +G  +D   +L 
Sbjct: 11  GTTIITVRKGGKVVIAGDGQVSFGQTIMKGNARKVRRLGKSGTVIAGFAGATADAFTLLE 70

Query: 355 YLD 363
            L+
Sbjct: 71  RLE 73

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>HSLV_BARHE (Q6G5G1) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 193

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 181 GNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLI--GGSGEFSDFQEILR 354
           G ++I ++    V+MA D   S G T+   +  +++ +GK   +  G +G  +D   +L 
Sbjct: 11  GTTIITVRKGGKVVMAGDGQVSLGQTIMKGNARKVRRLGKSGAVIAGFAGATADAFTLLE 70

Query: 355 YLD 363
            L+
Sbjct: 71  RLE 73

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>HSLV_RHOPA (P61477) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 189

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +1

Query: 169 PYVTGNSVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG 318
           P   G +++ ++    V++  D   S G T+   + ++++++GK  +IGG
Sbjct: 13  PVWHGTTILTVRKGGKVVIGGDGQVSIGQTVIKANAKKVRKLGKGDVIGG 62

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>CCNK_MOUSE (O88874) Cyclin-K|
          Length = 554

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 24  HHPQPQPQPSRGLPPTSETKPHQPP 98
           H   P P P  GLPP S   P  PP
Sbjct: 502 HAVPPHPPPGLGLPPASYPPPAVPP 526

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>VP03_SHV21 (Q01000) Probable membrane antigen 3 (Tegument protein)|
          Length = 1246

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 366 FIQIAQNLLEIT---ELPTPSNKAMLSNLLDTLHTLVSQG*PIRGSSIT 229
           F  +AQ +LE T   E+P+ ++  ML  +L  L TL+     + G  ++
Sbjct: 782 FGSVAQQILEKTFIGEIPSATSPVMLKKMLSVLQTLIKDESVVSGHDVS 830

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>TRA2_PSEFL (Q51761) Putative transposase for insertion sequence IS1162|
          Length = 558

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 219 HTILVFHCNHRVTSHIRVQ 163
           HT+ V H N RV SH+R+Q
Sbjct: 370 HTVEVLHGNRRVASHLRLQ 388

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>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)|
           (Aconitase 1)
          Length = 890

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 253 STLRYKSVERIKEVGK----HSLIGGSGEFSDFQEILRYLDELTLNDHMWDDGNSLGPKE 420
           STLR  S + ++   K    +SL   +    D   + + L  L  N   W DGNS+  ++
Sbjct: 2   STLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKVLLENLLRWQDGNSVTEED 61

Query: 421 IHA 429
           IHA
Sbjct: 62  IHA 64

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 27  HPQPQPQP-SRGLPPTSETKPHQPPT 101
           H QP P P SRG  P   T  H PPT
Sbjct: 211 HVQPTPSPPSRGHQPQPPTHRHAPPT 236



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPT 101
           P  QP P R LPP+   +P QPPT
Sbjct: 242 PTHQPSPLRHLPPSPRRQP-QPPT 264

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>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48)
          Length = 1692

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 9    QRERDHHPQPQPQPSRGLPPTSETKPHQPP 98
            Q +    PQPQPQP     P S+++P   P
Sbjct: 984  QPQPQPQPQPQPQPQPQPQPQSQSQPQPQP 1013

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>HSLV_AGRT5 (Q8UJ88) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 173

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 187 SVIAMKYKDGVIMACDTGASYGSTLRYKSVERIKEVGKHSLIGG-SGEFSDFQEILRYLD 363
           ++I ++    V+MA D   S G T+   +  +++ +GK  +I G +G  +D   +L  L+
Sbjct: 2   TIITVRKGGKVVMAGDGQVSLGQTVMKGNARKVRRIGKGEVIAGFAGATADAFTLLDRLE 61

Query: 364 E 366
           +
Sbjct: 62  K 62

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>MURD_SHIFL (Q83MF9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 438

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 301 HSLIGGSGEFSDFQEILRYLD 363
           H L+GG G+ +DF  ++RYL+
Sbjct: 341 HLLLGGDGKSADFSPLVRYLN 361

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>ATR_CANAL (Q59LR2) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase MEC1) (Mitosis entry
           checkpoint protein 1) (ATR homolog)
          Length = 2325

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 330 ELPTPSNKAMLSNLLDTLHTLVSQG*PIRGSSITCHDHTIL 208
           E  TP+   +LS L+DT+  ++S+  P+  + +T  D  I+
Sbjct: 52  ENKTPTELQLLSKLIDTIELVLSKKTPLLSTLLTIEDVNII 92

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>PCQAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (TPA-inducible
           gene 1 protein) (TIG-1) (Activator-recruited cofactor
           105 kDa component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 9   QRERDHHPQPQPQPSRGLPPTSETKPHQPPTRT 107
           Q     H QP PQP +  PP ++ +P Q P ++
Sbjct: 292 QMHHTQHHQPPPQPQQ--PPVAQNQPSQLPPQS 322

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>PALA_NEUCR (Q7S532) pH-response regulator protein palA/rim-20|
          Length = 886

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 12  RERDHHPQPQPQPSRGLPPTSETKPHQP 95
           +++ HH QP P P + +P     +PHQP
Sbjct: 792 QQQQHHQQPPPPPPQ-IPFPEPIQPHQP 818

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>SEL1L_HUMAN (Q9UBV2) Sel-1 homolog precursor (Suppressor of lin-12-like|
           protein) (Sel-1L)
          Length = 794

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +3

Query: 12  RERDHHPQPQPQPS--RGLPPTSETKPHQPP 98
           R+R H   P P+P   R  PP  E  P Q P
Sbjct: 762 RQRQHQDMPAPRPPGPRPAPPQQEGPPEQQP 792

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>ACFD_ECOLI (Q46837) Putative lipoprotein acfD homolog precursor|
          Length = 1520

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  PQPQPQPSRGLPPTSETKPHQPPTRT 107
           P+P P+P     PT E +P   PT+T
Sbjct: 66  PEPTPEPIPDPEPTPEPEPEPVPTKT 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,518,530
Number of Sequences: 219361
Number of extensions: 1273996
Number of successful extensions: 5070
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4907
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result