ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479416.1| Oryza sativa (japonica cultivar-group), mRNA 161 1e-36
2dbj|AK060418.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 1e-36
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 101 9e-19
4dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 101 9e-19
5gb|AY107993.1| Zea mays PCO140120 mRNA sequence 54 2e-04
6gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosom... 42 0.70
7gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome... 42 0.70
8gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 0.70
9ref|NM_116543.2| Arabidopsis thaliana unknown protein AT4G03090 ... 40 2.8
10gb|AC147455.3| Atelerix albiventris clone LB4-341B4, complete se... 40 2.8
11gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 40 2.8
12gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6... 40 2.8
13emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4,... 40 2.8
14emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 40 2.8
15emb|CR377227.7| Zebrafish DNA sequence from clone CH211-226F6 in... 40 2.8
16emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 ... 40 2.8
17gb|AC103783.2| Homo sapiens chromosome 8, clone RP11-664D7, comp... 40 2.8
18gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 2.8
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
21dbj|AB021265.1| Arabidopsis thaliana copia-like retrotransposon ... 40 2.8
22dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
23dbj|AP004183.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
24gb|BC107656.1| Rattus norvegicus Ras association (RalGDS/AF-6) d... 40 2.8
25ref|NM_001037096.1| Rattus norvegicus Ras association (RalGDS/AF... 40 2.8
26dbj|AP002531.2| Homo sapiens genomic DNA, chromosome 6q21, anti-... 40 2.8
27dbj|AB042236.1| Homo sapiens genomic DNA, chromosome 6q21, clone... 40 2.8 
>ref|XM_479416.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2010

 Score =  161 bits (81), Expect = 1e-36
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                        
Query: 22   ccatgtttgatcaagttctgagaaattttactccagatgtaccggctggaacatctgctc 81
            ||||||||||   ||||||||||||||||||||||||||| || ||||||||| || || 
Sbjct: 1184 ccatgtttgacacagttctgagaaattttactccagatgtgccagctggaacagcttcta 1243

                                                                        
Query: 82   ggccaagacaagaacatgcccaagagtttctaagttatgccatggatagaatgcatgatg 141
            ||||||| || ||| |||| ||||| ||  |||||| ||| |||||||||||||||||||
Sbjct: 1244 ggccaaggcaggaagatgctcaagaattcttaagttttgcgatggatagaatgcatgatg 1303

                                                                        
Query: 142  aactgttgaggcttaatggcaatggtttaaattcaaaggaaggtatggttgtttcttctg 201
            ||||  ||| ||||||||||||||| | |||||||||||| |||||| ||||||| ||  
Sbjct: 1304 aactagtgaagcttaatggcaatggctcaaattcaaaggagggtatgattgtttcatcaa 1363

                         
Query: 202  atgatgacgatgc 214
            ||||||| |||||
Sbjct: 1364 atgatgatgatgc 1376
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>dbj|AK060418.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F06, full
           insert sequence
          Length = 1831

 Score =  161 bits (81), Expect = 1e-36
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  ccatgtttgatcaagttctgagaaattttactccagatgtaccggctggaacatctgctc 81
           ||||||||||   ||||||||||||||||||||||||||| || ||||||||| || || 
Sbjct: 646 ccatgtttgacacagttctgagaaattttactccagatgtgccagctggaacagcttcta 705

                                                                       
Query: 82  ggccaagacaagaacatgcccaagagtttctaagttatgccatggatagaatgcatgatg 141
           ||||||| || ||| |||| ||||| ||  |||||| ||| |||||||||||||||||||
Sbjct: 706 ggccaaggcaggaagatgctcaagaattcttaagttttgcgatggatagaatgcatgatg 765

                                                                       
Query: 142 aactgttgaggcttaatggcaatggtttaaattcaaaggaaggtatggttgtttcttctg 201
           ||||  ||| ||||||||||||||| | |||||||||||| |||||| ||||||| ||  
Sbjct: 766 aactagtgaagcttaatggcaatggctcaaattcaaaggagggtatgattgtttcatcaa 825

                        
Query: 202 atgatgacgatgc 214
           ||||||| |||||
Sbjct: 826 atgatgatgatgc 838
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  101 bits (51), Expect = 9e-19
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                            
Query: 112      taagttatgccatggatagaatgcatgatgaactgttgaggcttaatggcaatggtttaa 171
                |||||| ||| |||||||||||||||||||||||  ||| ||||||||||||||| | ||
Sbjct: 27832387 taagttttgcgatggatagaatgcatgatgaactagtgaagcttaatggcaatggctcaa 27832446

                                                           
Query: 172      attcaaaggaaggtatggttgtttcttctgatgatgacgatgc 214
                |||||||||| |||||| ||||||| ||  ||||||| |||||
Sbjct: 27832447 attcaaaggagggtatgattgtttcatcaaatgatgatgatgc 27832489



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 22       ccatgtttgatcaagttctgagaaattttactccagatgtaccggctggaacatctgctc 81
                ||||||||||   ||||||||||||||||||||||||||| || ||||||||| || || 
Sbjct: 27831715 ccatgtttgacacagttctgagaaattttactccagatgtgccagctggaacagcttcta 27831774

                       
Query: 82       ggccaag 88
                |||||||
Sbjct: 27831775 ggccaag 27831781
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496C02
          Length = 148419

 Score =  101 bits (51), Expect = 9e-19
 Identities = 90/103 (87%)
 Strand = Plus / Plus

                                                                          
Query: 112    taagttatgccatggatagaatgcatgatgaactgttgaggcttaatggcaatggtttaa 171
              |||||| ||| |||||||||||||||||||||||  ||| ||||||||||||||| | ||
Sbjct: 124766 taagttttgcgatggatagaatgcatgatgaactagtgaagcttaatggcaatggctcaa 124825

                                                         
Query: 172    attcaaaggaaggtatggttgtttcttctgatgatgacgatgc 214
              |||||||||| |||||| ||||||| ||  ||||||| |||||
Sbjct: 124826 attcaaaggagggtatgattgtttcatcaaatgatgatgatgc 124868



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                          
Query: 22     ccatgtttgatcaagttctgagaaattttactccagatgtaccggctggaacatctgctc 81
              ||||||||||   ||||||||||||||||||||||||||| || ||||||||| || || 
Sbjct: 124094 ccatgtttgacacagttctgagaaattttactccagatgtgccagctggaacagcttcta 124153

                     
Query: 82     ggccaag 88
              |||||||
Sbjct: 124154 ggccaag 124160
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>gb|AY107993.1| Zea mays PCO140120 mRNA sequence
          Length = 1003

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 162 aatggtttaaattcaaaggaaggtatggttgtttcttct 200
           ||||||||  |||||||||| ||||||||||||||||||
Sbjct: 14  aatggtttggattcaaaggagggtatggttgtttcttct 52
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>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete
             sequence
          Length = 224442

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    acaagaacatgcccaagagtt 109
             |||||||||||||||||||||
Sbjct: 79208 acaagaacatgcccaagagtt 79228
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>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence
          Length = 164420

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     acaagaacatgcccaagagtt 109
              |||||||||||||||||||||
Sbjct: 156726 acaagaacatgcccaagagtt 156746
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     accggctggaacatctgctcg 82
              |||||||||||||||||||||
Sbjct: 415826 accggctggaacatctgctcg 415806
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>ref|NM_116543.2| Arabidopsis thaliana unknown protein AT4G03090 mRNA, complete cds
          Length = 2852

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ttcttctgatgatgacgatg 213
            ||||||||||||||||||||
Sbjct: 2576 ttcttctgatgatgacgatg 2557
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>gb|AC147455.3| Atelerix albiventris clone LB4-341B4, complete sequence
          Length = 164065

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agacaagaacatgcccaaga 106
             ||||||||||||||||||||
Sbjct: 47121 agacaagaacatgcccaaga 47102
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>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
             sequence
          Length = 98913

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttcttctgatgatgacgatg 213
             ||||||||||||||||||||
Sbjct: 16570 ttcttctgatgatgacgatg 16551
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>gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete
              sequence
          Length = 250823

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    taaattcaaaggaaggtatg 188
              ||||||||||||||||||||
Sbjct: 202534 taaattcaaaggaaggtatg 202553
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>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
              complete sequence
          Length = 132465

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    aaaggaaggtatggttgttt 195
              ||||||||||||||||||||
Sbjct: 113408 aaaggaaggtatggttgttt 113427
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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ttcttctgatgatgacgatg 213
             ||||||||||||||||||||
Sbjct: 17917 ttcttctgatgatgacgatg 17936
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>emb|CR377227.7| Zebrafish DNA sequence from clone CH211-226F6 in linkage group 2,
             complete sequence
          Length = 63114

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    ctgagaaattttactccagatgta 62
             |||||||||||||||||| |||||
Sbjct: 34611 ctgagaaattttactccaaatgta 34588
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>emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 in linkage group 24,
             complete sequence
          Length = 168886

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   taaattcaaaggaaggtatg 188
             ||||||||||||||||||||
Sbjct: 62695 taaattcaaaggaaggtatg 62714
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>gb|AC103783.2| Homo sapiens chromosome 8, clone RP11-664D7, complete sequence
          Length = 109941

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atcaagttctgagaaatttt 50
             ||||||||||||||||||||
Sbjct: 70552 atcaagttctgagaaatttt 70533
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     agacaagaacatgcccaaga 106
              ||||||||||||||||||||
Sbjct: 977677 agacaagaacatgcccaaga 977658
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      aaaggaaggtatggttgttt 195
                ||||||||||||||||||||
Sbjct: 12439380 aaaggaaggtatggttgttt 12439399
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     aaaggaaggtatggttgttt 195
               ||||||||||||||||||||
Sbjct: 7685366 aaaggaaggtatggttgttt 7685347
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>dbj|AB021265.1| Arabidopsis thaliana copia-like retrotransposon AtRE1 gene for
            polyprotein, complete cds, strain Landsberg erecta
          Length = 7405

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  ttcttctgatgatgacgatg 213
            ||||||||||||||||||||
Sbjct: 6302 ttcttctgatgatgacgatg 6321
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>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0494D11
          Length = 149198

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    aaaggaaggtatggttgttt 195
              ||||||||||||||||||||
Sbjct: 110561 aaaggaaggtatggttgttt 110542
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>dbj|AP004183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1221_H04
          Length = 129387

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aaaggaaggtatggttgttt 195
             ||||||||||||||||||||
Sbjct: 26089 aaaggaaggtatggttgttt 26070
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>gb|BC107656.1| Rattus norvegicus Ras association (RalGDS/AF-6) domain family 2,
           mRNA (cDNA clone MGC:124713 IMAGE:7935449), complete cds
          Length = 3428

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  caagacaagaacatgcccaagagt 108
           ||||||||| ||||||||||||||
Sbjct: 257 caagacaagtacatgcccaagagt 280
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>ref|NM_001037096.1| Rattus norvegicus Ras association (RalGDS/AF-6) domain family 2
           (Rassf2), mRNA
          Length = 3428

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 85  caagacaagaacatgcccaagagt 108
           ||||||||| ||||||||||||||
Sbjct: 257 caagacaagtacatgcccaagagt 280
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>dbj|AP002531.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region,
             section 4/4, complete sequence
          Length = 156978

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   aaattcaaaggaaggtatgg 189
             ||||||||||||||||||||
Sbjct: 83752 aaattcaaaggaaggtatgg 83771
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>dbj|AB042236.1| Homo sapiens genomic DNA, chromosome 6q21, clone:158K4, complete
             sequence
          Length = 96013

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   aaattcaaaggaaggtatgg 189
             ||||||||||||||||||||
Sbjct: 22787 aaattcaaaggaaggtatgg 22806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,208,860
Number of Sequences: 3902068
Number of extensions: 2208860
Number of successful extensions: 163415
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163172
Number of HSP's gapped (non-prelim): 243
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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