ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast47b09 |
|---|---|
| Clone Library Name | barley_pub |
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 35.8 bits (81), Expect = 0.056 Identities = 22/70 (31%), Positives = 28/70 (40%) Frame = +1 Query: 13 GEGREPGTEVVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHG 192 G G E T E A +LP K GR+ R P P P +Q P+ Sbjct: 1126 GTGSEEDTPASEPAAALPRKSGRAAATRSRIPRPIGLRMPMPVAAQQ--------PASRS 1177 Query: 193 HGLSPLLVTS 222 HG +P L T+ Sbjct: 1178 HGAAPALDTA 1187
>CDX4_HUMAN (O14627) Homeobox protein CDX-4 (Caudal-type homeobox protein 4)| Length = 284 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 90 SPAPASLFRQAPGFLHHLGSRFSPLPHPH 4 SP PAS F AP F H++G P PH Sbjct: 37 SPMPASNFAAAPAFSHYMGYPHMPSMDPH 65
>ARGC_VIBVY (Q7MH70) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 334 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 147 SSGASGCGKAARSRMPF-EVSPAPASLF--RQAPGFLHHLGSRFSPLPH 10 +SG SG G+ A F EVS P +F R P +HHLG PH Sbjct: 183 TSGVSGAGRKASMTNSFCEVSLQPYGIFNHRHQPEIVHHLGCDVIFTPH 231
>ARGC_VIBVU (P59313) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 334 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 147 SSGASGCGKAARSRMPF-EVSPAPASLF--RQAPGFLHHLGSRFSPLPH 10 +SG SG G+ A F EVS P +F R P +HHLG PH Sbjct: 183 TSGVSGAGRKASMTNSFCEVSLQPYGIFNHRHQPEIVHHLGCDVIFTPH 231
>RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP hematopoietic| protein C1) (p115) Length = 946 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = +1 Query: 31 GTEVVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRH 189 G + E+ S PE G ++L P PC+ P G +R+ + SP +H Sbjct: 814 GLQTAGESGSSPE--GLLASELVHRPEPCTSPEAMGPSGHRRRCLVPASPEQH 864
>HMGA2_MOUSE (P52927) High mobility group protein HMGI-C (High mobility group| AT-hook protein 2) Length = 108 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 13 GEGR-EPGTEVV-EEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQS 162 GEG +P T + A +P+KRGR R K+ P +P+ PRG+ + S Sbjct: 5 GEGAGQPSTSAQGQPAAPVPQKRGRGR-PRKQQQEPTCEPSPKRPRGRPKGS 55
>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1338 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/45 (40%), Positives = 20/45 (44%) Frame = +1 Query: 22 REPGTEVVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQR 156 R+ G E R R R R D KRH S STP RG +R Sbjct: 1294 RDRGDRERERERDRDRGRERDRRDTKRHSRSRSRSTPVRDRGGRR 1338
>MMSA_ANOGA (Q7QC84) Probable methylmalonate-semialdehyde dehydrogenase| [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (Malonate-semialdehyde dehydrogenase [acylating]) (EC 1.2.1.18) Length = 521 Score = 29.6 bits (65), Expect = 4.0 Identities = 22/64 (34%), Positives = 29/64 (45%) Frame = +1 Query: 1 AVWVGEGREPGTEVVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSP 180 AV+VGE R ++VE AR L G H SP+ KQR + LV S Sbjct: 310 AVFVGEARNWIPDLVERARKLKVNAG--------HLPGTDLGPVISPQSKQRINELVESG 361 Query: 181 SRHG 192 ++ G Sbjct: 362 AKEG 365
>ARGC_PHOLL (Q7MYD6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 334 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 147 SSGASGCGKAARSRMPF-EVSPAPASLF--RQAPGFLHHLGSRFSPLPH 10 +SG SG G+ A F E+S P +F R P HLG+R PH Sbjct: 183 TSGVSGAGRKASMTNSFCEISLQPYGIFTHRHQPEIEEHLGTRVVFTPH 231
>TWF2B_XENLA (Q640W2) Twinfilin-2-B| Length = 349 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = +1 Query: 43 VEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHG 192 +E+ L ++ K+H +F+ P+ P GK+ Q L+ P +G Sbjct: 297 IEDGAELTDEFLYDEVHPKQHAFKQAFAKPKGPAGKRGQKRLIKGPGENG 346
>TWF2A_XENLA (Q7ZXP0) Twinfilin-2-A| Length = 349 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = +1 Query: 43 VEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHG 192 +E+ L ++ K+H +F+ P+ P GK+ Q L+ P +G Sbjct: 297 IEDGAELTDEFLYDEVHPKQHAFKQAFAKPKGPAGKRGQKRLIKGPGENG 346
>POLG_JAEVJ (P32886) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%) Frame = -1 Query: 236 HWSAPLVTRRG------ESPCPCRDGDGTSVLWRCFPRGLRG 129 +W T+RG SP PC GD T+ ++R RG+ G Sbjct: 1495 YWLTLKTTKRGGVFWDTPSPKPCSKGDTTTGVYRIMARGILG 1536
>POLG_JAEV5 (P19110) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%) Frame = -1 Query: 236 HWSAPLVTRRG------ESPCPCRDGDGTSVLWRCFPRGLRG 129 +W T+RG SP PC GD T+ ++R RG+ G Sbjct: 1495 YWLTLKTTKRGGVFWDTPSPKPCSKGDTTTGVYRIMARGILG 1536
>POLG_JAEV1 (P27395) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%) Frame = -1 Query: 236 HWSAPLVTRRG------ESPCPCRDGDGTSVLWRCFPRGLRG 129 +W T+RG SP PC GD T+ ++R RG+ G Sbjct: 1495 YWLTLKTTKRGGVFWDTPSPKPCSKGDTTTGVYRIMARGILG 1536
>HAX1_HUMAN (O00165) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)| Length = 279 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +1 Query: 40 VVEEARSLPEKRGRSRTDLKRHPAPCS-FSTPRSPR 144 +VEE R++ + GR+ T + RH A S P SPR Sbjct: 222 IVEERRTVVDSEGRTETTVTRHEADSSPRGDPESPR 257
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 112 PCSFSTPRSPRGKQRQSTLVPSPSRHGHGLSPLLVTSGA 228 P + TP SP G +R + PS + H +G SP G+ Sbjct: 1393 PRGYMTPASPAGSERSPS--PSSTAHSYGHSPTTANYGS 1429
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = +1 Query: 40 VVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPS---PSRHGHGLSPL 210 V +EA P KR R + +P+P S P +P G +R +T PS P G G Sbjct: 494 VEQEAAVRPRKR---RGSGQENPSPQSTRPPLAPAGAKRAATHPPSDSGPGGRGQGGPGT 550 Query: 211 LVTSGA 228 +TS A Sbjct: 551 PLTSSA 556
>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1210 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/57 (35%), Positives = 23/57 (40%) Frame = +1 Query: 7 WVGEGREPGTEVVEEARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPS 177 W G EPG E EE S RG S P S+ P P QR S+ P+ Sbjct: 105 WFGSPLEPGAEDEEELESQELPRGSSGDTALSSGTPASWQPPLPP---QRPSSPPPA 158
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +1 Query: 49 EARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHGHGLSPL 210 ++RS E R RSR +RH S S RS R + +S RH H SP+ Sbjct: 49 KSRSRSESRSRSRRSSRRHYTR-SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +1 Query: 49 EARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHGHGLSPL 210 ++RS E R RSR +RH S S RS R + +S RH H SP+ Sbjct: 49 KSRSRSESRSRSRRSSRRHYTR-SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +1 Query: 49 EARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHGHGLSPL 210 ++RS E R RSR +RH S S RS R + +S RH H SP+ Sbjct: 49 KSRSRSESRSRSRRSSRRHYTR-SRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101
>CTTB2_MICMU (Q2QL82) Cortactin-binding protein 2 (CortBP2)| Length = 1647 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Frame = -1 Query: 227 APLVTRRGESPCPCRDGDGTSVLW----RCFPRGLRGVEKLHGA 108 APL R ESPC + G+GTS + CF G L GA Sbjct: 1200 APLEIRSPESPCTFQKGNGTSECYYFHENCFLMGTIAKACLQGA 1243
>ARGC_BUCAP (Q8KA61) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 334 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 144 SGASGCGKAARSRMPF-EVSPAPASLF--RQAPGFLHHLGSRFSPLPH 10 SG SG G+ A F EVS P ++F R P + HLG +PH Sbjct: 184 SGVSGAGRKANITNSFCEVSLHPYNVFTHRHTPEIIEHLGIPVIFIPH 231
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +1 Query: 49 EARSLPEKRGRSRTDLKRHPAPCSFSTPRSPRGKQRQSTLVPSPSRHG 192 E++ P +G+ R + R P S+P +G+ R VP+P G Sbjct: 77 ESKPSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALEAVPAPPASG 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,014,791 Number of Sequences: 219361 Number of extensions: 962707 Number of successful extensions: 3523 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3520 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
