ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 33 0.14
2TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA ... 30 1.5
3TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2 29 3.4
4TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA ... 28 5.8
5POXM_DROME (P23757) Paired box pox-meso protein (Paired box meso... 28 7.5
6GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa ze... 28 7.5
7WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp) 27 9.9

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 256 HLPRPPVVGPPKGHLPRPPVV 318
           H P+PP+V PP  H+PRPP+V
Sbjct: 98  HGPKPPIVKPP--HVPRPPIV 116



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 259 LPRPPVVGPPKGHLPRPPVV 318
           +P PP+V PP   +P PPVV
Sbjct: 201 IPTPPIVSPP--FVPNPPVV 218



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>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150) (p144) (Formin-binding protein 28) (FBP 28)
          Length = 1100

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 HLPRPPVVGPPKGHLPRPP 312
           HL RPP + PP G +P PP
Sbjct: 93  HLQRPPFMPPPMGAMPPPP 111



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>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2|
          Length = 906

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +1

Query: 253 GHLP--RPPVVGPPKGHLP 303
           GHLP  RPP +GP  GH P
Sbjct: 869 GHLPISRPPGIGPDSGHAP 887



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>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 256 HLPRPPVVGPPKGHLPRPP 312
           HL RPP + PP   +P PP
Sbjct: 93  HLQRPPFMPPPMSSMPPPP 111



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>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal|
           protein)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 16  PVHHHYHQLAAMAAS 60
           P HHH+HQ AA AAS
Sbjct: 223 PHHHHHHQSAAAAAS 237



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>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)|
           (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2)
          Length = 223

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 HLPRPPVVGPPKGHLPRPP 312
           HLP PPV  PP  HLP PP
Sbjct: 65  HLP-PPVHVPPPVHLPPPP 82



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>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)|
          Length = 501

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 259 LPRPPVVGPPKGHL-PRPPV 315
           LPRPP+VG  KG   P PPV
Sbjct: 325 LPRPPIVGGNKGRSGPLPPV 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,945,437
Number of Sequences: 219361
Number of extensions: 158426
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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