ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast47b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 47 8e-06
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 47 1e-05
3SFAH_HELAN (P81098) Seed fatty acyl-ester hydrolase (EC 3.1.1.1)... 38 0.005
4THIO_RHIET (O34292) Putative thiamine biosynthesis oxidoreductas... 28 7.0

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 271 VPCYFIFGDSLVDNGNNNYIVSLTRANYPPYGIDFAGG 384
           +P  F FGDS+ D GNNN + +  + NY PYG+DF  G
Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMG 160



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +1

Query: 271 VPCYFIFGDSLVDNGNNNYIVSLTRANYPPYGIDF 375
           +P  F FGDS+ D GNNN + +  ++NY PYG+DF
Sbjct: 202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDF 236



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>SFAH_HELAN (P81098) Seed fatty acyl-ester hydrolase (EC 3.1.1.1) (Fragment)|
          Length = 18

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 262 DPQVPCYFIFGDSLVDNG 315
           DPQVP YFIFGDSL DNG
Sbjct: 1   DPQVPXYFIFGDSLYDNG 18



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>THIO_RHIET (O34292) Putative thiamine biosynthesis oxidoreductase thiO|
          Length = 327

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 129 LVATARHTGSAEEIDRWTRRREKWKWI 49
           +VA  R TG   E+DR++RR   W+W+
Sbjct: 86  VVAGGRDTG---ELDRFSRRTSGWEWL 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,815,153
Number of Sequences: 219361
Number of extensions: 403895
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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