ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast47a09 |
|---|---|
| Clone Library Name | barley_pub |
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 83.6 bits (205), Expect = 2e-16 Identities = 42/88 (47%), Positives = 56/88 (63%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K +KM+Q +NYR+R+ +QD R +G F A D+HMNL+LGDCEEF K+ SK+SK Sbjct: 5 KNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-RSKNSK-VPERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDE 275 +VS+TVEGPPPP+E Sbjct: 63 EKRVLGFVLLRGENIVSLTVEGPPPPEE 90
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 82.0 bits (201), Expect = 6e-16 Identities = 49/143 (34%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P S + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 82.0 bits (201), Expect = 6e-16 Identities = 49/143 (34%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P S + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 82.0 bits (201), Expect = 6e-16 Identities = 49/143 (34%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P S + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 82.0 bits (201), Expect = 6e-16 Identities = 49/143 (34%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P S + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--PERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 80.1 bits (196), Expect = 2e-15 Identities = 48/143 (33%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P + + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ--PERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 80.1 bits (196), Expect = 2e-15 Identities = 48/143 (33%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P + + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ--PERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 80.1 bits (196), Expect = 2e-15 Identities = 48/143 (33%), Positives = 62/143 (43%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++YRMR +QDGR +G F A D+HMNL+L DC+EF K+ P + + Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ--PERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 78.6 bits (192), Expect = 7e-15 Identities = 48/143 (33%), Positives = 61/143 (42%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K SKMLQ ++ RMR +QDGR +G F A D+HMNL+L DC+EF K+ P S + Sbjct: 5 KSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AERE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQ 371 +VSMTVEGPPP D P+ Q Sbjct: 63 EKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPAGVPMPQ 122 Query: 372 AQPGLSXXXXXXXXXXXXMMQPQ 440 A GL+ +M PQ Sbjct: 123 APAGLAGPIRGVGGPSQQVMTPQ 145
>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated| protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 160 Score = 72.8 bits (177), Expect = 4e-13 Identities = 34/88 (38%), Positives = 50/88 (56%) Frame = +3 Query: 12 KGSKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXX 191 K +KM+ +NYRM++ +QDGR +G F A D+HMN++L +CEE ++ P K Sbjct: 5 KNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK--TDGE 62 Query: 192 XXXXXXXXXXXXXXVVSMTVEGPPPPDE 275 +VSMTV+GPPP D+ Sbjct: 63 EKRILGLVLVRGEHIVSMTVDGPPPRDD 90
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 60.8 bits (146), Expect = 2e-09 Identities = 38/128 (29%), Positives = 51/128 (39%) Frame = +3 Query: 57 TIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXXXXXXXXXXXXXXXXV 236 ++Q+GR +G F A D+HMNL+L DC+EF K+ P S + + Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AEREEKRVLGLVLLRGENL 60 Query: 237 VSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQAQPGLSXXXXXXXXX 416 VSMTVEGPPP D P+ QA GL+ Sbjct: 61 VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 120 Query: 417 XXXMMQPQ 440 +M PQ Sbjct: 121 SQQVMTPQ 128
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I| Length = 147 Score = 55.8 bits (133), Expect = 5e-08 Identities = 28/85 (32%), Positives = 45/85 (52%) Frame = +3 Query: 18 SKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSKSSKXXXXXXXX 197 +KM+ +N+ + VT +DGR VG+ +A D MNLVL DC+E+ + ++ Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-KKQNVPSNSVYEEK 62 Query: 198 XXXXXXXXXXXXVVSMTVEGPPPPD 272 +VS++V+GPPP D Sbjct: 63 RMLGLVILRGEFIVSLSVQGPPPMD 87
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 196 Score = 52.8 bits (125), Expect = 4e-07 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 7/59 (11%) Frame = +3 Query: 18 SKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE-------FHKLPPSKSSK 173 S++ ++Y++RV QDGR +G+ MA D+HMNLVL +C E KL P K SK Sbjct: 10 SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68
>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2| Length = 939 Score = 36.6 bits (83), Expect = 0.031 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = +2 Query: 38 QLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKI--FQD---HRRARG 193 +LP R+ P RP PTR V+ P P P R G P PA QD +R+ +G Sbjct: 240 ELPIQREEPSRPRRKPTRPPVNRSPRPSTPSPNRSAGGPPKPAAPATPAQDDSRNRKKKG 299 Query: 194 AEDARPA 214 D +PA Sbjct: 300 RRDEKPA 306
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 34.7 bits (78), Expect = 0.12 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Frame = +2 Query: 35 RQLPDARDHPGR-----PPTRGEVHGL-RSPHEPRPRRLRGVPQAPALKIFQDHRRARGA 196 R L +D GR PP RG R+P R R R ++ + + + R R Sbjct: 736 RSLTPRKDTRGRSLSRTPPRRGRGRSYSRTPSRSRSRS-RSYSRSVSKSVSRSPPRRRAV 794 Query: 197 EDARPAPSPWRGGRLHDRRGPAPAR 271 E P+P P GR +DR +P+R Sbjct: 795 ESRSPSPPPRGRGRSYDRYSRSPSR 819 Score = 32.3 bits (72), Expect = 0.58 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 4/86 (4%) Frame = +2 Query: 26 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 205 APV A G+ G RSPH P +RL RR + Sbjct: 865 APVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRL---------------RRGSYSRSR 909 Query: 206 RPAPSPWRG----GRLHDRRGPAPAR 271 +P P RG GR R GPAPAR Sbjct: 910 SRSPIPIRGNGPAGRDTGRAGPAPAR 935
>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein| Length = 77 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 24 MLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 ML +V+ + V ++ G ++ G D+H+N++LGD EE Sbjct: 13 MLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = +3 Query: 45 RMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 R+ V +++ R+L G+ A D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = +3 Query: 45 RMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 R+ V +++ R+L G+ A D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 34.7 bits (78), Expect = 0.12 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = +2 Query: 20 ENAPVRQLPDARDHPGRPP----TRGEVHGLRSP-HEPRPRRLRGVPQAPALKIFQDHRR 184 +N P+ QLP+ + P PP T E G+R P P PRR P P + + Sbjct: 309 QNRPLPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLN 368 Query: 185 ARGAEDARPAPSPWRGGRLHDRRGPAP 265 + G P + RRGPAP Sbjct: 369 SAGGNSLLPQAT--------GRRGPAP 387
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +2 Query: 2 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 181 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 182 RARGAEDARPAPSPWRGGRLHDRRG 256 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +2 Query: 2 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 181 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 182 RARGAEDARPAPSPWRGGRLHDRRG 256 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 33.1 bits (74), Expect = 0.34 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Frame = +2 Query: 35 RQLPDARDHPGR---PPTRGEVHGLRSPHEPRPRRLRGVP---QAPALKIFQDHRRARGA 196 R LP +RD P + P G H RSP RPR+ P ++P L +D + Sbjct: 630 RDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDND 689 Query: 197 EDAR---PAPSPWRGGRLHDRRG 256 +R PSP + DRRG Sbjct: 690 RSSRLLLERPSP-----IRDRRG 707
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 33.1 bits (74), Expect = 0.34 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +3 Query: 54 VTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 V ++ R+L G+ A D H+N+VLGD EE Sbjct: 24 VKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 33.1 bits (74), Expect = 0.34 Identities = 23/77 (29%), Positives = 31/77 (40%) Frame = +2 Query: 35 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 214 R+ D P PP R RSP P RR ++P+ HRR + P+ Sbjct: 753 RRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSPP---PHRRRYSDDSRSPS 809 Query: 215 PSPWRGGRLHDRRGPAP 265 P P R + R P+P Sbjct: 810 PPPRRRRYSDNSRSPSP 826
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 33.1 bits (74), Expect = 0.34 Identities = 24/79 (30%), Positives = 31/79 (39%) Frame = +2 Query: 2 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 181 VEP+G+ P + P H R P ++ G P PR L G P+ P + Sbjct: 360 VEPRGYMGPPHQGPPMHHGHDNRGPASHDMRG--GPLAADPRMLIGEPRGPMI------- 410 Query: 182 RARGAEDARPAPSPWRGGR 238 D R P RGGR Sbjct: 411 ------DQRGLPMDGRGGR 423
>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 807 Score = 32.3 bits (72), Expect = 0.58 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = +2 Query: 80 RGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPS 220 RG R P PRPRRLR PQ P HR A+ A P+ Sbjct: 297 RGGRRTARRPPRPRPRRLRAAPQGPG----AGHRLAQRGRPAFALPA 339
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 32.3 bits (72), Expect = 0.58 Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Frame = +2 Query: 50 ARDHPGRPP-TRGEVHGLRSPHEPRPRRL-----RGVPQAPALKIFQDHRRARGAEDARP 211 A PG P T G G+ P PRP G P P + G +D P Sbjct: 210 AGPRPGNNPFTSGGSTGMARPQAPRPGGAPRPGGAGAPGGP-------RPQGAGGQDRAP 262 Query: 212 APSPWRGGRLHDRRGPAPAR*VPG 283 P GG + GP AR PG Sbjct: 263 RPQGGPGGAPRPQGGPGGARPTPG 286
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 32.0 bits (71), Expect = 0.76 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +2 Query: 11 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 157 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 158 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGL 292 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 32.0 bits (71), Expect = 0.76 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +2 Query: 11 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 157 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 158 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGL 292 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 32.0 bits (71), Expect = 0.76 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 19/112 (16%) Frame = +2 Query: 8 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRR------------------- 130 P+GF P PG P +GE GL P PR + Sbjct: 274 PRGFPGTP-----GVAGQPGLPGMKGE-KGLSGPAGPRGKEGRPGLPGPPGFKGDRGLDG 327 Query: 131 LRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQ 286 L GVP P K GA+ AR P P GG D GP +PG+ Sbjct: 328 LPGVPGLPGQKGEAGFPGRDGAKGARGPPGPPGGGEFSD--GPPGPPGLPGR 377
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)| Length = 172 Score = 32.0 bits (71), Expect = 0.76 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +3 Query: 36 VNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 V+ ++ V ++DGR L G D++ NL+L DC E Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE 84
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 32.0 bits (71), Expect = 0.76 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Frame = +2 Query: 53 RDHPGRPPTRGEVHGLRSPHEPRPRRLRG----VPQAPALKIFQDHRRARGAEDARPAPS 220 R HP RP +PH R RR G P AP + +D A AR Sbjct: 1230 RSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPARRLTG 1289 Query: 221 PWRGGRLHDRRGPAPA 268 P R H RR P A Sbjct: 1290 PSR----HARRCPHAA 1301
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 32.0 bits (71), Expect = 0.76 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = +2 Query: 62 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 241 PG P P RP+ PQ P + R + + RPAP+P G + Sbjct: 265 PGSTPLNPAASQPPPPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKRPAPTP--GTQA 322 Query: 242 HDRRGP 259 H ++GP Sbjct: 323 HQQKGP 328
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 32.0 bits (71), Expect = 0.76 Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 10/102 (9%) Frame = +2 Query: 14 GFENAPVRQLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 184 G E AP + A G P P GE P P G APA Sbjct: 26 GGEPAPAEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAP 85 Query: 185 ARG-------AEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 289 A G AE PAP+P GG G APA P +G Sbjct: 86 AEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAP-APAEG 126 Score = 28.9 bits (63), Expect = 6.4 Identities = 24/82 (29%), Positives = 27/82 (32%) Frame = +2 Query: 44 PDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 223 P + P P GE P G APA AE PAP+P Sbjct: 263 PAEGEAPAPAPAEGEAPAPAPAEGEAPAPAEGEAPAPA-----------PAEGEAPAPAP 311 Query: 224 WRGGRLHDRRGPAPAR*VPGQG 289 GG G APA P +G Sbjct: 312 AEGGAPSPAEGGAPAA-APAEG 332
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 31.6 bits (70), Expect = 0.99 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = +2 Query: 71 PPTRGEVHGLRSPHEP-RPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGR-LH 244 PP RG P +P R +RG P P + R RG + P P P+RG R Sbjct: 674 PPPRGGDPFWDGPGDPMRGGPMRGGP-GPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 732 Query: 245 DRRGPAPAR*VPGQGL 292 GP R PG G+ Sbjct: 733 SGGGPPNGRGGPGGGM 748
>CDAN1_HUMAN (Q8IWY9) Codanin-1| Length = 1226 Score = 31.2 bits (69), Expect = 1.3 Identities = 27/77 (35%), Positives = 31/77 (40%) Frame = +2 Query: 62 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 241 P PPT + G + RP G P+ Q A AP RGGR Sbjct: 66 PQGPPTPAKTPGASAALPGRPG---GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR- 121 Query: 242 HDRRGPAPAR*VPGQGL 292 RRGP PAR G+GL Sbjct: 122 --RRGPGPARERGGRGL 136
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = +2 Query: 8 PQGFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 184 P+G P + D PGRP RG P P+ RG+P L + HR Sbjct: 208 PRGPAGPPGKNGDDGEAGKPGRPGQRGP---------PGPQGARGLPGTAGLPGMKGHRG 258 Query: 185 ARGAEDARPAPSP 223 G + A+ P P Sbjct: 259 FSGLDGAKGQPGP 271
>MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protein 31)| Length = 88 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 21 KMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 K+ F+ + V++ + R LVG +A D MNL+L EE Sbjct: 5 KLSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEE 44
>ENA_DROME (Q8T4F7) Protein enabled| Length = 834 Score = 30.4 bits (67), Expect = 2.2 Identities = 27/80 (33%), Positives = 30/80 (37%) Frame = +2 Query: 44 PDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 223 P A P PP+ G G P P+ G P PA+ G A PAP P Sbjct: 553 PPAPAPPPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAM--------GGGPPPAPPAP-P 603 Query: 224 WRGGRLHDRRGPAPAR*VPG 283 GG GP PA PG Sbjct: 604 AMGG------GPPPAPGGPG 617
>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor| Length = 1159 Score = 30.4 bits (67), Expect = 2.2 Identities = 25/74 (33%), Positives = 29/74 (39%) Frame = +2 Query: 65 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLH 244 GR P G + PH R R P A + R+ARG E P PSP Sbjct: 50 GRSPEPGRL----GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP------- 98 Query: 245 DRRGPAPAR*VPGQ 286 GPAP PG+ Sbjct: 99 ---GPAPG---PGE 106
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 30.4 bits (67), Expect = 2.2 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 34/107 (31%) Frame = +2 Query: 5 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 136 +P G + P++R HP R P RG++ R P H P RR Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRPPGQKPGPDLTSAPGRGSHGPPTRRAS 234 Query: 137 GVPQAPALKIFQ--DH----------------RRARGAEDARPAPSP 223 + A + + DH RRA + ARPAP+P Sbjct: 235 EARMSTAARDSEGWDHAHGGGTGDTSRSPAGLRRANSVQAARPAPAP 281
>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)| Length = 1386 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = +2 Query: 8 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRP 124 P G AP L D+ HP R P+ E G P P P Sbjct: 951 PMGLGPAPYSWLADSWPHPSRSPSAQEPRGSCCPSNPDP 989
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/76 (31%), Positives = 28/76 (36%) Frame = +2 Query: 26 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 205 AP + + D P RPP R R P PRP Q P + +A ED Sbjct: 209 APTSEALASGDDPQRPPPRRFRQRFRRPFRPRP----APQQTP--EGGDGEAKAESGEDP 262 Query: 206 RPAPSPWRGGRLHDRR 253 RP P R RR Sbjct: 263 RPEPQRQRNRPYVQRR 278
>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 18 SKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 S + ++N + V DGR +VG D+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 18 SKMLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 S + ++N + V DGR +VG D+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 30.0 bits (66), Expect = 2.9 Identities = 11/34 (32%), Positives = 24/34 (70%) Frame = +3 Query: 39 NYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 N+++ + ++ ++L+G+ A DRH N+VL + +E Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/53 (39%), Positives = 22/53 (41%) Frame = +2 Query: 65 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 223 G PP R G PH RPR P A HRRA G D P P+P Sbjct: 1205 GPPPRRRARCGCPRPHPHRPRASHRAP--AAAPHHHRHRRAAGGWDF-PPPAP 1254
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/97 (30%), Positives = 37/97 (38%) Frame = +2 Query: 2 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 181 VEP+G+ P Q P PG H +R PR L P+ P + Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHDSRGPPPHEMRGGPLTEPRPLMAEPRGPMI------- 392 Query: 182 RARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQGL 292 D R P RGGR D RG AR + +GL Sbjct: 393 ------DQRGPPLDGRGGR--DPRG-IDARAMEARGL 420
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +2 Query: 8 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVP 145 P+ +P R++P R PG P++ RSP RP LR P Sbjct: 752 PKAASPSPARRVPATRRSPGPGPSQSP----RSPKHTRPAELRLAP 793
>TNAA_PROVU (P28796) Tryptophanase (EC 4.1.99.1) (L-tryptophan indole-lyase)| (TNase) Length = 467 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 452 GTRDLRLHHARSRTAYTPNRARETGLRLEQRAGGH 348 GT + LH+ + Y +R RE G+ ++ GGH Sbjct: 319 GTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGH 353
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 14 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 190 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 191 GAEDARPAPSPWRGG 235 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 14 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 190 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 191 GAEDARPAPSPWRGG 235 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochrome c-552)| (Cytochrome c552) Length = 161 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +2 Query: 29 PVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAP 154 P Q+ A D GR RG++ L P RR+R P+ P Sbjct: 33 PAVQIVPALDRLGRADVRGQIPPLGRPITDDVRRMRNYPEQP 74
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = +2 Query: 35 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 214 R+ P + P RPP + R+ +PRP P P + + R AR + + P Sbjct: 755 RKRPVSNGRPARPPVTAGLVAARAAGDPRP------PHDPTHPLAESPRPARSSPASSPE 808 Query: 215 PSP 223 +P Sbjct: 809 LTP 811
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 14 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 190 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 191 GAEDARPAPSPWRGG 235 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 4.9 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 14 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 190 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 191 GAEDARPAPSPWRGG 235 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 29.3 bits (64), Expect = 4.9 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Frame = +2 Query: 38 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 205 Q+P+ R P RPP G G P P+PR +G P G Sbjct: 28 QIPNQRPPPSGFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 74 Query: 206 RP--APSPWRGGRLHDRRGPAP 265 RP P P G + +GP P Sbjct: 75 RPPQGPPPPGGPQPRPPQGPPP 96
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 29.3 bits (64), Expect = 4.9 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +2 Query: 26 APVRQLPDARDH--PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAE 199 AP + +P A + PGR P + L PH PR L A A K +A GA+ Sbjct: 237 APPQPVPGAYPNTGPGRRP-----YALLHPHPPRYLLLSAPAYAGAPK------KAEGAD 285 Query: 200 DARPAPSP 223 A PAP P Sbjct: 286 LATPAPFP 293
>PROB_PHOLL (Q7N7B2) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 368 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = +2 Query: 74 PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 205 P HGL SP E R R + G P PA +I DH GAE A Sbjct: 251 PVGTRFHGLESPMENRKRWIFGAP--PAGEIIVDH----GAETA 288
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 29.3 bits (64), Expect = 4.9 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Frame = +2 Query: 38 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 205 Q+P+ R P RPP G G P P+PR +G P G Sbjct: 7 QIPNQRPPPSGSQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 53 Query: 206 RP--APSPWRGGRLHDRRGPAP 265 RP P P G + +GP P Sbjct: 54 RPPQGPPPPGGPQPRPPQGPPP 75
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 45 RMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 R+ + ++ R LVG A D H N+VL D E Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +3 Query: 39 NYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE-FHKLPPSKSSK 173 N ++ + ++ ++L+G+ A DRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +3 Query: 39 NYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE-FHKLPPSKSSK 173 N ++ + ++ ++L+G+ A DRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA| topoisomerase III beta-1) Length = 862 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 44 PDARDHPGRPPTRGEVHGLRSPHEPRPRR 130 P R PGR RG G R P +P PRR Sbjct: 821 PMHRGGPGRRQGRGRGRGRRPPGKPNPRR 849
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +3 Query: 39 NYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE-FHKLPPSKSSK 173 N ++ + ++ ++L+G+ A DRH N+VL + +E + +LP + K Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.9 bits (63), Expect = 6.4 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = +2 Query: 53 RDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWR- 229 R P PP R RSP P P R R P P RR+ R +PSP R Sbjct: 541 RRSPSPPPARRR----RSPSPPPPPRRRRSPSLP-------RRRSPSPPPRRRSPSPRRY 589 Query: 230 GGRLHDRRGPAP 265 + R P+P Sbjct: 590 SPPIQRRYSPSP 601
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 28.9 bits (63), Expect = 6.4 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Frame = +2 Query: 5 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGV--PQAPALKIFQDH 178 +P G E+ P L AR P P+R E G+ S PRP +G PQ PA Sbjct: 52 DPHG-EDGPEPILDAAR--PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQ-PAPHSVWSR 107 Query: 179 RRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 289 AR RP+ SP + G R P P + P +G Sbjct: 108 LGAR-----RPSCSPEQHGGKVARLQPPPTKAQPARG 139
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 28.9 bits (63), Expect = 6.4 Identities = 25/86 (29%), Positives = 30/86 (34%) Frame = +2 Query: 32 VRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARP 211 V QLP P P L RP V +APA P Sbjct: 279 VAQLPTRSSPPQHRPRLPSTESLSR----RPLPALPVSEAPA-------------PSPAP 321 Query: 212 APSPWRGGRLHDRRGPAPAR*VPGQG 289 +P+P R G + DR P P +PG G Sbjct: 322 SPAPGRKGSIQDRPLPPPPPCLPGYG 347
>KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallikrein-like| protein 3) (KLK-L3) Length = 250 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 182 RARGAEDARPAPSPWRGGRLH 244 RA GAE+ RP PW+ G H Sbjct: 22 RAIGAEECRPNSQPWQAGLFH 42
>RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +3 Query: 24 MLQFVNYRMRVTI----QDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSK 164 + +++ R R+ + Q ++ G + D +MNLVL D EE H S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +3 Query: 24 MLQFVNYRMRVTI----QDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSK 164 + +++ R R+ + Q ++ G + D +MNLVL D EE H S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +3 Query: 24 MLQFVNYRMRVTI----QDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSK 164 + +++ R R+ + Q ++ G + D +MNLVL D EE H S+ Sbjct: 21 IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71
>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8| Length = 94 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 24 MLQFVNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEE 140 + F+ R++V DGR ++G D NL+L D E Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +3 Query: 36 VNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSK 164 + R+ + ++ +++VG + D +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +3 Query: 36 VNYRMRVTIQDGRQLVGKFMASDRHMNLVLGDCEEFHKLPPSK 164 + R+ + ++ +++VG + D +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 28.9 bits (63), Expect = 6.4 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Frame = +2 Query: 5 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGV--PQAPALKIFQDH 178 +P G E+ P L AR P P+R E G+ S PRP +G PQ PA Sbjct: 52 DPHG-EDGPEPILDAAR--PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQ-PAPHSVWSR 107 Query: 179 RRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 289 AR RP+ SP + G R P P + P +G Sbjct: 108 LGAR-----RPSCSPEQHGGKVARLQPPPTKAQPARG 139
>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)| Length = 846 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%) Frame = -3 Query: 80 ELAAV-----LDGHAHPVVDELEHFRTLGV 6 EL AV LDGH +P+ EL HF GV Sbjct: 467 ELGAVFGYCPLDGHVYPLAAELSHFLRAGV 496
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.5 bits (62), Expect = 8.4 Identities = 24/83 (28%), Positives = 30/83 (36%) Frame = +2 Query: 35 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 214 RQ PG PP R P P P+R G PQA R A + PA Sbjct: 531 RQSRPVAGGPGAPPAA------RPPASPSPQRQAGAPQA-----------TRQASISGPA 573 Query: 215 PSPWRGGRLHDRRGPAPAR*VPG 283 P+ G ++ P + PG Sbjct: 574 PTKASGAPPGGQQRQGPPQKPPG 596
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 28.5 bits (62), Expect = 8.4 Identities = 25/80 (31%), Positives = 32/80 (40%) Frame = +2 Query: 50 ARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWR 229 AR P PP R + S RP VP+AP+ P+P+P R Sbjct: 285 ARSPP--PPHRPRLPSAESLSR-RPLPALPVPEAPS-------------PSPVPSPAPGR 328 Query: 230 GGRLHDRRGPAPAR*VPGQG 289 G + DR P P +PG G Sbjct: 329 KGSIQDRPLPPPPPRLPGYG 348
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.5 bits (62), Expect = 8.4 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = +2 Query: 62 PGRPPTRGEVH-----GLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR-PAPSP 223 PG+P GE G R P P P+ RG P P L + HR G + A+ A +P Sbjct: 179 PGKPGDDGEAGKPGKAGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP 236 Query: 224 WRGGRL-----HDRRGPAPAR*VPGQ 286 G + GP R +PG+ Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGE 262
>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta| chain 3) (Beta-IV spectrin) Length = 2564 Score = 28.5 bits (62), Expect = 8.4 Identities = 27/86 (31%), Positives = 31/86 (36%) Frame = +2 Query: 32 VRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARP 211 V QL + PG P L P E P RL + P D RAR R Sbjct: 2327 VEQLQEKEAGPGLPAGPS----LPQPRELPPGRLPNGLELPERTPRPDRPRARDRPKPRR 2382 Query: 212 APSPWRGGRLHDRRGPAPAR*VPGQG 289 P P GG + G +R P QG Sbjct: 2383 RPRPREGG---EGGGSRRSRSAPAQG 2405
>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)| Length = 684 Score = 28.5 bits (62), Expect = 8.4 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 21/109 (19%) Frame = +2 Query: 5 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 136 +P G + P++R HP R P RG++ R+P H P RR Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRAS 234 Query: 137 GVPQAPALKIFQ--DHRRARGAEDARPAPSPWRGGRLHD---RRGPAPA 268 + + + DH GA D +P +G R + PAPA Sbjct: 235 EARMSTTTRDSEGWDHGHGGGAGDTSRSPGGEQGLRRANSVQASRPAPA 283
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = +2 Query: 62 PGRPPTRGEV-----HGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR 208 PG+P GE G R P P P+ RG P P L + HR G + A+ Sbjct: 63 PGKPGDDGEAGKPGKSGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 114
>RUXE_BRARE (Q7ZUG0) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = +3 Query: 24 MLQFVNYRMRVTI----QDGRQLVGKFMASDRHMNLVLGDCEEFH 146 + +++ R R+++ Q ++ G + D +MNLVL D EE H Sbjct: 21 IFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVH 65
>TRS1_HCMVA (P09695) Protein HHLF1| Length = 788 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%) Frame = -3 Query: 80 ELAAV-----LDGHAHPVVDELEHFRTLGV 6 EL AV LDGH +P+ EL HF GV Sbjct: 467 ELGAVFGYCPLDGHVYPLAAELSHFLRAGV 496 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,829,142 Number of Sequences: 219361 Number of extensions: 926947 Number of successful extensions: 3536 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 3207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3492 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
