ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480211.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
2dbj|AK108395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
3gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
4gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
6dbj|AK066379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
7dbj|AK061317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
8gb|BT018062.1| Zea mays clone EL01N0532G08.c mRNA sequence 72 2e-09
9gb|AY105351.1| Zea mays PCO101615 mRNA sequence 72 2e-09
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
11dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
12ref|XM_959854.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.095
13ref|XM_324970.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.095
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.095
15gb|AY217337.1| Mus musculus malic enzyme gene, promoter region a... 44 0.37
16ref|NM_190275.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
17ref|NM_001005679.1| Xenopus tropicalis nudix (nucleoside diphosp... 42 1.5
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21gb|BC075099.1| Xenopus tropicalis nudix (nucleoside diphosphate ... 42 1.5
22gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, com... 42 1.5
23gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.8
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
25gb|AC016207.9| Homo sapiens, clone RP11-25H20, complete sequence 40 5.8
26gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.8
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
29gb|AC078994.3|AC078994 Homo sapiens chromosome 2 clone RP11-16B4... 40 5.8
30gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
31dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
34emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, ... 40 5.8
35dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
36dbj|AK111543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
37dbj|AB024902.1| Bombyx mori BHR3 mRNA for hormone receptor 3, pa... 40 5.8

>ref|XM_480211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 690

 Score =  117 bits (59), Expect = 3e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                       
Query: 308 ccgccggcctacaccggaaacctgaagaaagcacttgcagggttgaggagaattgattta 367
           |||||||| | |||||| ||||| ||||||||||||||||| ||||| || ||  |||||
Sbjct: 13  ccgccggcgttcaccgggaacctcaagaaagcacttgcaggattgagaaggatcaattta 72

                                                                       
Query: 368 gaaggattgcggtggcgtgtttttgatgcaaagggccaggtacttggacggttggcatcc 427
           || || ||| | |||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 73  gatgggttgagatggcgtgtatttgatgcaaagggtcaggtgcttggacggttggcatcc 132

              
Query: 428 caa 430
           |||
Sbjct: 133 caa 135



to top

>dbj|AK108395.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F09, full
           insert sequence
          Length = 779

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                       
Query: 334 gaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttga 393
           ||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| |||||
Sbjct: 75  gaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttga 134

                                                
Query: 394 tgcaaagggccaggtacttggacggttggcatcccaa 430
            |||||||||||||| |||||||||||||||||||||
Sbjct: 135 cgcaaagggccaggtccttggacggttggcatcccaa 171



to top

>gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0004B23, complete sequence
          Length = 153136

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 333   agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
             |||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| ||||
Sbjct: 85502 agaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttg 85443

                             
Query: 393   atgcaaagggccaggt 408
             | ||||||||||||||
Sbjct: 85442 acgcaaagggccaggt 85427



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 333   agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
             |||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| ||||
Sbjct: 75992 agaaagcacttgcaggcttgagaagaatcaatttagatggattgagatggcgtgtatttg 75933

                             
Query: 393   atgcaaagggccaggt 408
             | ||||||||||||||
Sbjct: 75932 acgcaaagggccaggt 75917



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 335   aaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttgat 394
             |||||||||||||  ||||| |||||  ||||||| || ||| | ||| |||| ||||| 
Sbjct: 78355 aaagcacttgcagacttgagaagaatcaatttagatggtttgagatggtgtgtatttgac 78296

                           
Query: 395   gcaaagggccaggt 408
             ||||||||||||||
Sbjct: 78295 gcaaagggccaggt 78282



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 405   aggtacttggacggttggcatcccaa 430
             |||| |||||||||||||||||||||
Sbjct: 85347 aggtccttggacggttggcatcccaa 85322



to top

>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01,
            complete sequence
          Length = 156691

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 333  agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
            |||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| ||||
Sbjct: 8353 agaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttg 8294

                            
Query: 393  atgcaaagggccaggt 408
            | ||||||||||||||
Sbjct: 8293 acgcaaagggccaggt 8278



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 335  aaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttgat 394
            |||||||||||||  ||||| |||||  ||||||| || ||| | ||| |||| ||||| 
Sbjct: 1206 aaagcacttgcagacttgagaagaatcaatttagatggtttgagatggtgtgtatttgac 1147

                          
Query: 395  gcaaagggccaggt 408
            ||||||||||||||
Sbjct: 1146 gcaaagggccaggt 1133



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 405  aggtacttggacggttggcatcccaa 430
            |||| |||||||||||||||||||||
Sbjct: 8198 aggtccttggacggttggcatcccaa 8173



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 333     agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
               |||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| ||||
Sbjct: 8599930 agaaagcacttgcaggtttgagaagaatcaatttagatggattgagatggcgtgtatttg 8599871

                               
Query: 393     atgcaaagggccaggt 408
               | ||||||||||||||
Sbjct: 8599870 acgcaaagggccaggt 8599855



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 333     agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
               |||||||||||||||| ||||| |||||  ||||||| |||||| | |||||||| ||||
Sbjct: 8590420 agaaagcacttgcaggcttgagaagaatcaatttagatggattgagatggcgtgtatttg 8590361

                               
Query: 393     atgcaaagggccaggt 408
               | ||||||||||||||
Sbjct: 8590360 acgcaaagggccaggt 8590345



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                           
Query: 335     aaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttgat 394
               |||||||||||||  ||||| |||||  ||||||| || ||| | ||| |||| ||||| 
Sbjct: 8592783 aaagcacttgcagacttgagaagaatcaatttagatggtttgagatggtgtgtatttgac 8592724

                             
Query: 395     gcaaagggccaggt 408
               ||||||||||||||
Sbjct: 8592723 gcaaagggccaggt 8592710



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 405     aggtacttggacggttggcatcccaa 430
               |||| |||||||||||||||||||||
Sbjct: 8599775 aggtccttggacggttggcatcccaa 8599750



to top

>dbj|AK066379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065N04, full
            insert sequence
          Length = 3789

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                        
Query: 335  aaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttgat 394
            |||||||||||||  ||||| |||||  ||||||| || ||| | ||| |||| ||||| 
Sbjct: 3210 aaagcacttgcagacttgagaagaatcaatttagatggtttgagatggtgtgtatttgac 3269

                                                
Query: 395  gcaaagggccaggtacttggacggttggcatcccaa 430
            |||||||||||||| |||||||||||||| ||||||
Sbjct: 3270 gcaaagggccaggtccttggacggttggcgtcccaa 3305



to top

>dbj|AK061317.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D09, full
           insert sequence
          Length = 1076

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 338 gcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttgatgca 397
           ||||||||||  ||||| |||||  ||||||| || ||| | ||| |||| ||||| |||
Sbjct: 551 gcacttgcagacttgagaagaatcaatttagatggtttgagatggtgtgtatttgacgca 610

                                            
Query: 398 aagggccaggtacttggacggttggcatcccaa 430
           ||||||||||| |||||||||||||| ||||||
Sbjct: 611 aagggccaggtccttggacggttggcgtcccaa 643



to top

>gb|BT018062.1| Zea mays clone EL01N0532G08.c mRNA sequence
          Length = 892

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 99/120 (82%)
 Strand = Plus / Plus

                                                                       
Query: 311 ccggcctacaccggaaacctgaagaaagcacttgcagggttgaggagaattgatttagaa 370
           ||||||| ||| || |||||||||||||||||||||||  |||| |||||  ||||||| 
Sbjct: 67  ccggccttcacgggcaacctgaagaaagcacttgcaggtctgagaagaatcaatttagat 126

                                                                       
Query: 371 ggattgcggtggcgtgtttttgatgcaaagggccaggtacttggacggttggcatcccaa 430
           ||  | || ||||| || |||||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 127 gggcttcgatggcgcgtatttgatgctaagggtcaggtgctgggacgattggcttcccaa 186



to top

>gb|AY105351.1| Zea mays PCO101615 mRNA sequence
          Length = 1079

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 99/120 (82%)
 Strand = Plus / Plus

                                                                       
Query: 311 ccggcctacaccggaaacctgaagaaagcacttgcagggttgaggagaattgatttagaa 370
           ||||||| ||| || |||||||||||||||||||||||  |||| |||||  ||||||| 
Sbjct: 115 ccggccttcacgggcaacctgaagaaagcacttgcaggtctgagaagaatcaatttagat 174

                                                                       
Query: 371 ggattgcggtggcgtgtttttgatgcaaagggccaggtacttggacggttggcatcccaa 430
           ||  | || ||||| || |||||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 175 gggcttcgatggcgcgtatttgatgctaagggtcaggtgctgggacgattggcttcccaa 234



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                           
Query: 333     agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
               |||||||||||||||| ||||| || ||  ||||||| || ||| | |||||||| ||||
Sbjct: 3630273 agaaagcacttgcaggattgagaaggatcaatttagatgggttgagatggcgtgtatttg 3630332

                               
Query: 393     atgcaaagggccaggt 408
               |||||||||| |||||
Sbjct: 3630333 atgcaaagggtcaggt 3630348



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 405     aggtacttggacggttggcatcccaa 430
               |||| |||||||||||||||||||||
Sbjct: 3630446 aggtgcttggacggttggcatcccaa 3630471



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 119      ctcctcctgctccgctcgtc 138
                ||||||||||||||||||||
Sbjct: 23739116 ctcctcctgctccgctcgtc 23739097



to top

>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                          
Query: 333    agaaagcacttgcagggttgaggagaattgatttagaaggattgcggtggcgtgtttttg 392
              |||||||||||||||| ||||| || ||  ||||||| || ||| | |||||||| ||||
Sbjct: 108779 agaaagcacttgcaggattgagaaggatcaatttagatgggttgagatggcgtgtatttg 108838

                              
Query: 393    atgcaaagggccaggt 408
              |||||||||| |||||
Sbjct: 108839 atgcaaagggtcaggt 108854



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 405    aggtacttggacggttggcatcccaa 430
              |||| |||||||||||||||||||||
Sbjct: 108952 aggtgcttggacggttggcatcccaa 108977



to top

>ref|XM_959854.1| Neurospora crassa OR74A hypothetical protein (NCU00791.1) partial
           mRNA
          Length = 240

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 8   cagctcccgtgctccgcgtctcc 30
           |||||||||||||||||||||||
Sbjct: 104 cagctcccgtgctccgcgtctcc 126



to top

>ref|XM_324970.1| Neurospora crassa OR74A hypothetical protein (NCU00791.1) partial
           mRNA
          Length = 240

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 8   cagctcccgtgctccgcgtctcc 30
           |||||||||||||||||||||||
Sbjct: 104 cagctcccgtgctccgcgtctcc 126



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 177     cccgagccccgcccccgccaccacgcc 203
               ||||||||||||||||||| |||||||
Sbjct: 2653401 cccgagccccgcccccgccgccacgcc 2653427



to top

>gb|AY217337.1| Mus musculus malic enzyme gene, promoter region and partial cds
          Length = 923

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 170 agcctggcccgagccccgcccccgcc 195
           ||||||||| ||||||||||||||||
Sbjct: 694 agcctggccggagccccgcccccgcc 719



to top

>ref|NM_190275.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1794

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 99  ggcgttcgcgggctcgcgctctcctcctgctccgctc 135
           |||||||| | ||||| ||||||||||| ||||||||
Sbjct: 107 ggcgttcgggagctcgtgctctcctcctcctccgctc 143



to top

>ref|NM_001005679.1| Xenopus tropicalis nudix (nucleoside diphosphate linked moiety
           X)-type motif 4 (nudt4), mRNA
          Length = 2614

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 gctctcctcctgctccgctcg 136
           |||||||||||||||||||||
Sbjct: 98  gctctcctcctgctccgctcg 118



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 99       ggcgttcgcgggctcgcgctctcctcctgctccgctc 135
                |||||||| | ||||| ||||||||||| ||||||||
Sbjct: 38994031 ggcgttcgggagctcgtgctctcctcctcctccgctc 38994067



to top

>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 99    ggcgttcgcgggctcgcgctctcctcctgctccgctc 135
             |||||||| | ||||| ||||||||||| ||||||||
Sbjct: 67664 ggcgttcgggagctcgtgctctcctcctcctccgctc 67700



to top

>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506A10
          Length = 145265

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 99    ggcgttcgcgggctcgcgctctcctcctgctccgctc 135
             |||||||| | ||||| ||||||||||| ||||||||
Sbjct: 12011 ggcgttcgggagctcgtgctctcctcctcctccgctc 12047



to top

>gb|BC075099.1| Xenopus tropicalis nudix (nucleoside diphosphate linked moiety
           X)-type motif 4, mRNA (cDNA clone MGC:79545
           IMAGE:6978229), complete cds
          Length = 2614

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 gctctcctcctgctccgctcg 136
           |||||||||||||||||||||
Sbjct: 98  gctctcctcctgctccgctcg 118



to top

>gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, complete sequence
          Length = 182848

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   ggcccgagccccgcccccgcc 195
             |||||||||||||||||||||
Sbjct: 75488 ggcccgagccccgcccccgcc 75468



to top

>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cgagccccgcccccgccacc 198
              ||||||||||||||||||||
Sbjct: 782199 cgagccccgcccccgccacc 782218



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       caagggaaagaaccaccaca 56
                ||||||||||||||||||||
Sbjct: 13620580 caagggaaagaaccaccaca 13620599



to top

>gb|AC016207.9| Homo sapiens, clone RP11-25H20, complete sequence
          Length = 169476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   ccgagccccgcccccgccaccacg 201
             |||||||||||||||||| |||||
Sbjct: 45198 ccgagccccgcccccgcccccacg 45175



to top

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 330     tgaagaaagcacttgcagggttga 353
               ||||||||| ||||||||||||||
Sbjct: 4080702 tgaagaaagtacttgcagggttga 4080725



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 54       acagcacctcgccgccgccg 73
                ||||||||||||||||||||
Sbjct: 20338125 acagcacctcgccgccgccg 20338106



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 37       caagggaaagaaccaccaca 56
                ||||||||||||||||||||
Sbjct: 13615555 caagggaaagaaccaccaca 13615574



to top

>gb|AC078994.3|AC078994 Homo sapiens chromosome 2 clone RP11-16B4 containing NRXN1 gene,
             partial cds, complete sequence
          Length = 179616

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   aagaaagcacttgcagggtt 351
             ||||||||||||||||||||
Sbjct: 25504 aagaaagcacttgcagggtt 25485



to top

>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    caagggaaagaaccaccaca 56
             ||||||||||||||||||||
Sbjct: 11252 caagggaaagaaccaccaca 11271



to top

>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0092C08
          Length = 131049

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   ctcctcctgctccgctcgtc 138
             ||||||||||||||||||||
Sbjct: 28316 ctcctcctgctccgctcgtc 28297



to top

>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1113_A10
          Length = 160089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    ctcctcctgctccgctcgtc 138
              ||||||||||||||||||||
Sbjct: 146712 ctcctcctgctccgctcgtc 146693



to top

>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1439_F07
          Length = 153743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     acagcacctcgccgccgccg 73
              ||||||||||||||||||||
Sbjct: 117252 acagcacctcgccgccgccg 117233



to top

>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence
          Length = 178948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    tcctgctccgctcgtccgcc 142
              ||||||||||||||||||||
Sbjct: 176944 tcctgctccgctcgtccgcc 176925



to top

>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full
            insert sequence
          Length = 3343

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   caagggaaagaaccaccaca 56
            ||||||||||||||||||||
Sbjct: 1609 caagggaaagaaccaccaca 1628



to top

>dbj|AK111543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E12, full
           insert sequence
          Length = 1090

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  acagcacctcgccgccgccg 73
           ||||||||||||||||||||
Sbjct: 840 acagcacctcgccgccgccg 821



to top

>dbj|AB024902.1| Bombyx mori BHR3 mRNA for hormone receptor 3, partial cds
          Length = 1111

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  acagcacctcgccgccgccg 73
           ||||||||||||||||||||
Sbjct: 798 acagcacctcgccgccgccg 817


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,362,681
Number of Sequences: 3902068
Number of extensions: 3362681
Number of successful extensions: 116517
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115687
Number of HSP's gapped (non-prelim): 830
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top