ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZAN_MOUSE (O88799) Zonadhesin precursor 32 0.39

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 6    NHTYIPLQC-THARFASLLPSLLPLC 80
            N T IPLQC  H+R+ + LPS  PLC
Sbjct: 3172 NCTNIPLQCPAHSRYTNCLPSCPPLC 3197



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 6    NHTYIPLQC-THARFASLLPSLLPLC 80
            N   IPLQC  H+ F S LPS  P C
Sbjct: 3885 NCAKIPLQCPAHSHFTSCLPSCPPSC 3910



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 12   TYIPLQC-THARFASLLPSLLPLC 80
            T I LQC  H ++ S LPS LP C
Sbjct: 3411 TKITLQCPAHTQYTSCLPSCLPSC 3434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,826,064
Number of Sequences: 219361
Number of extensions: 208114
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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