ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46h06 |
|---|---|
| Clone Library Name | barley_pub |
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = +3 Query: 12 PTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARP 119 P H +P FFP P G S G PPS RP Sbjct: 348 PPAPHVNPNFFPPPGNAGMTSSDSRGPPPSDPYGRP 383
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 31.2 bits (69), Expect = 0.61 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Frame = -2 Query: 183 DARDEAPSDHPPLGGSHCCHAKVEPAAE-REEGQGR 79 D +D P D PP HCCH P R G G+ Sbjct: 410 DFQDYGPCDPPPHNQGHCCHGHGPPPGHLRRRGPGK 445
>HPS6_HUMAN (Q86YV9) Hermansky-Pudlak syndrome 6 protein (Ruby-eye protein| homolog) (Ru) Length = 775 Score = 31.2 bits (69), Expect = 0.61 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = -2 Query: 180 ARDEAPSDHPPLGGSHC-CHAKVEPAAEREEGQGRASALL 64 AR E PS P SHC C +EP+ E GR LL Sbjct: 146 ARAEGPSGSPAAAFSHCVCVRTLEPSGEASTSLGRTHVLL 185
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 12 PTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARP 119 P H +P FFP P+ G S G PP+ RP Sbjct: 352 PPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRP 387
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 12 PTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARP 119 P H +P FFP P+ G S G PP+ RP Sbjct: 352 PPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRP 387
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 12 PTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARP 119 P H +P FFP P+ G S G PP+ RP Sbjct: 352 PPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRP 387
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 12 PTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARP 119 P H +P FFP P+ G S G PP+ RP Sbjct: 352 PPAPHVNPAFFPPPANSGIPTSDSRGPPPTDPYGRP 387
>SGO2_SCHPO (O13734) Shugoshin-2| Length = 647 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = +1 Query: 160 AGSLVARVLAGKAANASPRRAVHASAYDKNVDEQVRPAFVPDDVIGGAGSPDKYWGPHPT 339 A SL + VL +++N S R H S D N++ + F P+D + + + GP T Sbjct: 330 ANSLDSAVLLVQSSNKSNRNGHHIS--DPNLNSSISLKFAPEDTAHNSLTSQENVGPQVT 387 Query: 340 T 342 T Sbjct: 388 T 388
>NEUA_RAT (P69060) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 432 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +3 Query: 324 GPSPDHRRLRPGRGRPQAVRQPRGAGQ 404 GP+P R RP RGRP +++ RGAG+ Sbjct: 12 GPAP---RGRPSRGRPPKLQRSRGAGR 35
>NEUA_MOUSE (Q99KK2) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 432 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +3 Query: 324 GPSPDHRRLRPGRGRPQAVRQPRGAGQ 404 GP+P R RP RGRP +++ RGAG+ Sbjct: 12 GPAP---RGRPSRGRPPKLQRSRGAGR 35
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = +3 Query: 6 SIPTHTHTHPLFFPQPSRIGAEQRLSLGLPPSRQQARPLHGSSGYLQGAG 155 S+ TH H FP G + GL + QA P HGSS + AG Sbjct: 16 SLSPSTHAHQCHFPAIFNFGDSNSDTGGLSAAFGQAGPPHGSSFFGSPAG 65
>PAND_MYCPA (Q743Y4) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 143 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = +1 Query: 163 GSLVARVLAGKAANASPR----RAVHASAYDKNVDEQVRPAFVPDDVIGGA 303 G LV + G A R R V A +K VD PAFVPD I GA Sbjct: 82 GDLVILIAYGTMEEAEARAYQPRIVFVDADNKPVDLGHDPAFVPDFEIAGA 132
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -3 Query: 377 SLGSTAAGPKTPVVG*GPQYLSGLPAPPITSSGTKAGRTCSSTF 246 +L + A P GPQ L+G A P+T++ ++ TCSS F Sbjct: 120 TLAAAATSAPAPGAPGGPQ-LAGSSAGPVTAAPSQPPTTCSSRF 162
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein| yolkless) (YL) Length = 1984 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = -3 Query: 83 GEPLLCSDPRRLGEEEWVC--VCVCGDG 6 GE LC++ R L ++WVC V CGDG Sbjct: 229 GEGHLCANGRCLRRKQWVCDGVDDCGDG 256
>PEPM_STRHY (P29247) Phosphoenolpyruvate phosphomutase (EC 5.4.2.9)| (Phosphoenolpyruvate mutase) (PEP mutase) (PEP phosphomutase) Length = 313 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 366 DRGRAEDAGGRVRAPVLVWAPGAADHIVRHEG 271 DRG AGGR+R L+ APGA + H+G Sbjct: 11 DRGTTRSAGGRLR--YLLHAPGACQLMGVHDG 40
>GNA13_MOUSE (P27601) Guanine nucleotide-binding protein alpha-13 subunit (G| alpha-13) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/62 (22%), Positives = 28/62 (45%) Frame = +1 Query: 112 LDLCMAAVATSKGRVIAGSLVARVLAGKAANASPRRAVHASAYDKNVDEQVRPAFVPDDV 291 +D C++ T R++ L+ +GK+ R +H +D+ E+ RP + + Sbjct: 34 IDKCLSREKTYVKRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVI 93 Query: 292 IG 297 G Sbjct: 94 KG 95
>GNA13_HUMAN (Q14344) Guanine nucleotide-binding protein alpha-13 subunit (G| alpha-13) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/62 (22%), Positives = 28/62 (45%) Frame = +1 Query: 112 LDLCMAAVATSKGRVIAGSLVARVLAGKAANASPRRAVHASAYDKNVDEQVRPAFVPDDV 291 +D C++ T R++ L+ +GK+ R +H +D+ E+ RP + + Sbjct: 34 IDKCLSREKTYVKRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVI 93 Query: 292 IG 297 G Sbjct: 94 KG 95
>DXR_MYCPE (Q8EWQ6) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +1 Query: 76 GSPLAFLPLGSRLDLCMAAVATSKGRVIAGSLVARVLAGKAANASPRRAVHASAYD--KN 249 G + L L + +DL A+A + V+AG L+ + ++ P + H+S YD KN Sbjct: 97 GLHITLLALKNNVDL---ALANKESLVVAGWLIEDLKRSSSSRIYPVDSEHSSLYDSLKN 153 Query: 250 VDEQVRPAFV 279 +++++ + Sbjct: 154 NNKEIKELII 163
>Y3480_MYCTU (O06343) Hypothetical UPF0089 protein Rv3480c/MT3584| Length = 497 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +3 Query: 6 SIPTHTHTHPLFF--PQPSRIGAEQRLSLGLPPSRQQARPLHGSSGYLQGAGD 158 S H THPLFF P P R A+ + S+G + G+ L G GD Sbjct: 160 STDPHDTTHPLFFNIPTPGRSPADTQDSVG-------GGLIAGAGNVLDGLGD 205
>SYA_DEHSC (Q3ZWC3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 871 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 277 VPDDVIGGAGSPDKYWGPHPTTGVFGPAA 363 VP++ I G+ D +WGP +G GP + Sbjct: 140 VPENRIVRLGAADNFWGPAGDSGPCGPCS 168
>ADM2_RAT (P61312) ADM2 precursor (Intermedin) [Contains: Adrenomedullin-2| (Intermedin-long) (IMDL); Intermedin-short (IMDS)] Length = 146 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 324 GPSPDHRRLRPGRGRPQAVRQPRGAG 401 GP P H LRP +P QP+G G Sbjct: 45 GPQPGHPSLRPVVWKPPHALQPQGRG 70
>HEM1_HALSA (Q9HP72) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 436 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +1 Query: 133 VATSKGRVIAGSLVARVLAGKAANASPRRAVHASAYDKNVDEQVRPAFVPDDVIGGAGSP 312 +A ++GR+ A +V A SP + ASA+ D V P DV GAG Sbjct: 230 LADARGRLDAADVVV------TATGSPEHVLPASAFADAGDTVVVDLAQPRDVAPGAGGH 283 Query: 313 D 315 D Sbjct: 284 D 284
>CAD_DROME (P09085) Homeotic protein caudal| Length = 427 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 371 GSTAAGPKTPVVG*GPQYLSGLPAPPITSSGTK 273 G+T GP + GLP+PPIT SG++ Sbjct: 157 GATDGGPGSAPPNHQQHIAEGLPSPPITVSGSE 189
>Y1412_STRCO (Q9RKX1) UPF0317 protein SCO1412| Length = 277 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 134 TAAMQRSSLLPRGRKAKGEPLLCSDPRRLGEEE 36 +AA+ SSLLP G P+ C DP LG ++ Sbjct: 188 SAAIHESSLLPA---VHGSPVHCGDPSALGIDD 217
>SYA_LEPIN (Q8F0T4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 977 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +1 Query: 277 VPDDVIGGAGSPDKYWGPHPTTGVFGPAA 363 +P + I G D +WGP +G GP + Sbjct: 143 IPKERITRLGKKDNFWGPAGDSGACGPCS 171
>SYA_LEPIC (P61703) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 977 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +1 Query: 277 VPDDVIGGAGSPDKYWGPHPTTGVFGPAA 363 +P + I G D +WGP +G GP + Sbjct: 143 IPKERITRLGKKDNFWGPAGDSGACGPCS 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,164,744 Number of Sequences: 219361 Number of extensions: 827397 Number of successful extensions: 3502 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3501 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
