ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
2dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
3dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
4dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
5gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 m... 100 6e-18
6emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for ... 92 2e-15
7emb|AJ862831.1| Secale cereale partial secc4 gene for pollen all... 84 4e-13
8gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome... 80 6e-12
9emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen ... 80 6e-12
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 6e-12
12emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for ... 76 9e-11
13emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen al... 76 9e-11
14gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 pre... 76 9e-11
15emb|AJ862830.1| Secale cereale partial secc4 gene for pollen all... 72 1e-09
16gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full ... 72 1e-09
17emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen ... 60 5e-06
18dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
19dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
20ref|XM_468176.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
21gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 44 0.32
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
23dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
24dbj|AK072337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
25dbj|AK071978.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
26ref|XM_481787.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
27emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen all... 40 5.0
28dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.0
29gb|AF363310.1| Polycope sp. OC-2001 18S ribosomal RNA gene, part... 40 5.0
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
32dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
33gb|DQ231522.1| Zea mays molybdenum cofactor biosynthesis protein... 40 5.0
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
35emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  153 bits (77), Expect = 5e-34
 Identities = 152/177 (85%)
 Strand = Plus / Minus

                                                                            
Query: 196      cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 255
                ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 20461987 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 20461928

                                                                            
Query: 256      tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 315
                | | ||| | |   ||||||||||||||| |||| | | | |||||||| || |||||||
Sbjct: 20461927 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 20461868

                                                                         
Query: 316      aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
                ||||||||||  | ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 20461867 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcg 20461811



 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                            
Query: 272      gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 331
                ||||||| |||| ||| ||||| |||| ||||| ||||||||||||||||||||  ||||
Sbjct: 20486383 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 20486324

                                                         
Query: 332      cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |||||||||| ||||||| ||||||||| | ||||||||||
Sbjct: 20486323 cggccgccggaacggcgtccgcctccgcatccgcagcggcg 20486283



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                            
Query: 274      ggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcg 333
                |||||||||||||||||||| || || |||| || |||||||||||||||||  ||||||
Sbjct: 20438095 ggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggccgccgtgctctgcg 20438036

                                                       
Query: 334      gccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |||||    | || ||||||||||||| |||||||||||
Sbjct: 20438035 gccgcgccgagggggtgcgcctccgcgcgcgcagcggcg 20437997



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                            
Query: 275      gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
                |||||| |||||||||| |||||  ||  | |||||| ||||||||||||||||||||||
Sbjct: 20466048 gccgctgtgcatcgtcatggcgaagaagacctcccacatccaggccgccgtcgtctgcgg 20465989

                                                      
Query: 335      ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |||||||||  | || ||| |||||| |||||||||||
Sbjct: 20465988 ccgccggcatcgtgtccgcgtccgcgcgcgcagcggcg 20465951



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 329      ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |||||||||||| |||  ||| ||| ||||||||||||||||||
Sbjct: 20421550 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcg 20421507



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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0659D09
          Length = 168253

 Score =  153 bits (77), Expect = 5e-34
 Identities = 152/177 (85%)
 Strand = Plus / Minus

                                                                         
Query: 196   cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 255
             ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 34282 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 34223

                                                                         
Query: 256   tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 315
             | | ||| | |   ||||||||||||||| |||| | | | |||||||| || |||||||
Sbjct: 34222 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 34163

                                                                      
Query: 316   aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
             ||||||||||  | ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 34162 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcg 34106



 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                         
Query: 272   gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 331
             ||||||| |||| ||| ||||| |||| ||||| ||||||||||||||||||||  ||||
Sbjct: 58678 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 58619

                                                      
Query: 332   cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
             |||||||||| ||||||| ||||||||| | ||||||||||
Sbjct: 58618 cggccgccggaacggcgtccgcctccgcatccgcagcggcg 58578



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 274   ggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcg 333
             |||||||||||||||||||| || || |||| || |||||||||||||||||  ||||||
Sbjct: 10390 ggccgctctgcatcgtcacgccggccgacgcgtcgcacgtccaggccgccgtgctctgcg 10331

                                                    
Query: 334   gccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
             |||||    | || ||||||||||||| |||||||||||
Sbjct: 10330 gccgcgccgagggggtgcgcctccgcgcgcgcagcggcg 10292



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                         
Query: 275   gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
             |||||| |||||||||| |||||  ||  | |||||| ||||||||||||||||||||||
Sbjct: 38343 gccgctgtgcatcgtcatggcgaagaagacctcccacatccaggccgccgtcgtctgcgg 38284

                                                   
Query: 335   ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
             |||||||||  | || ||| |||||| |||||||||||
Sbjct: 38283 ccgccggcatcgtgtccgcgtccgcgcgcgcagcggcg 38246



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>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full
           insert sequence
          Length = 1813

 Score =  153 bits (77), Expect = 5e-34
 Identities = 152/177 (85%)
 Strand = Plus / Plus

                                                                       
Query: 196 cgcggagctcgccgtcgttcgcgtccgtcctggcgtcgtccgtccggaacccgcggttcc 255
           ||||| ||||| ||||||||||||| || ||||||||||||||| |||||||| ||||||
Sbjct: 200 cgcggggctcgtcgtcgttcgcgtcggtgctggcgtcgtccgtcaggaacccgaggttcc 259

                                                                       
Query: 256 tcgggccggccgtggtgcggccgctctgcatcgtcacggcgaccaacgcatcccacgtcc 315
           | | ||| | |   ||||||||||||||| |||| | | | |||||||| || |||||||
Sbjct: 260 tggcgcccggcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtcc 319

                                                                    
Query: 316 aggccgccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           ||||||||||  | ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 320 aggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcg 376



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>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full
           insert sequence
          Length = 1972

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 272 gcggccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctg 331
           ||||||| |||| ||| ||||| |||| ||||| ||||||||||||||||||||  ||||
Sbjct: 289 gcggccggtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctg 348

                                                    
Query: 332 cggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           |||||||||| ||||||| ||||||||| | ||||||||||
Sbjct: 349 cggccgccggaacggcgtccgcctccgcatccgcagcggcg 389



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>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds
          Length = 1569

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                       
Query: 295 cgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcc 354
           |||||||||| |||||| ||||||||||||| || |||||||||||||||||| ||||| 
Sbjct: 257 cgaccaacgcctcccacatccaggccgccgtggtgtgcggccgccggcacggcatgcgca 316

                             
Query: 355 tccgcgtgcgcagcggcg 372
           ||||||||||||| ||||
Sbjct: 317 tccgcgtgcgcagtggcg 334



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>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
           allele A1
          Length = 1567

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||| ||| |||||||||  | |||||||| |||||| ||||| ||||||| || |||||
Sbjct: 180 gccgatctacatcgtcacccccaccaacgcctcccacatccagtccgccgtggtgtgcgg 239

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           |||||||||||| || ||| ||||||||||||||||||
Sbjct: 240 ccgccggcacggtgtccgcatccgcgtgcgcagcggcg 277



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>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4,
           allele B
          Length = 1644

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||||||| |||| ||||  | |||||||| |||||| ||||| |||| || || |||||
Sbjct: 225 gccgctctacatcatcacccccaccaacgcctcccacatccagtccgcggtggtgtgcgg 284

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           ||||||||||||||| ||| |||||||||| |||||||
Sbjct: 285 ccgccggcacggcgtccgcatccgcgtgcggagcggcg 322



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>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0085G12, complete sequence
          Length = 121470

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                         
Query: 281   ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 340
             |||||||||  ||||| || |||| ||||||||||||||||||||    ||||||| |||
Sbjct: 74501 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 74442

                                             
Query: 341   gcacggcgtgcgcctccgcgtgcgcagcggcg 372
             |  |||||| ||||||||||||||||||||||
Sbjct: 74441 gagcggcgtccgcctccgcgtgcgcagcggcg 74410



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>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
           allele B
          Length = 1603

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 297 accaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcctc 356
           |||||||| |||||| ||||  |||| || || |||||||||||||||||||| ||||||
Sbjct: 238 accaacgcctcccacatccaatccgcggtggtgtgcggccgccggcacggcgtccgcctc 297

                           
Query: 357 cgcgtgcgcagcggcg 372
           |||||||| |||||||
Sbjct: 298 cgcgtgcggagcggcg 313



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                            
Query: 281      ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 340
                |||||||||  ||||| || |||| ||||||||||||||||||||    ||||||| |||
Sbjct: 17006894 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 17006835

                                                
Query: 341      gcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |  |||||| ||||||||||||||||||||||
Sbjct: 17006834 gagcggcgtccgcctccgcgtgcgcagcggcg 17006803



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                            
Query: 281      ctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccg 340
                |||||||||  ||||| || |||| ||||||||||||||||||||    ||||||| |||
Sbjct: 17101546 ctgcatcgtggcggcgtccgacgcgtcccacgtccaggccgccgtgcggtgcggccaccg 17101487

                                                
Query: 341      gcacggcgtgcgcctccgcgtgcgcagcggcg 372
                |  |||||| ||||||||||||||||||||||
Sbjct: 17101486 gagcggcgtccgcctccgcgtgcgcagcggcg 17101455



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>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
           allele B1
          Length = 1580

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||||||| |||| ||||  | |||||||  |||||| ||||| ||||||| || |||||
Sbjct: 180 gccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggtgtgcgg 239

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           |||||| ||| |||| ||| ||||||||||||||||||
Sbjct: 240 ccgccgccacagcgtccgcatccgcgtgcgcagcggcg 277



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>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4
          Length = 1608

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||||||| |||| ||||  | |||||| | |||||| ||||| | || || || |||||
Sbjct: 219 gccgctctacatcatcacccccaccaacacctcccacatccagtctgctgtggtgtgcgg 278

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           ||||||||||||||| |||||||||||||| |||||||
Sbjct: 279 ccgccggcacggcgtccgcctccgcgtgcggagcggcg 316



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>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA,
           complete cds
          Length = 1741

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||||||| |||| ||||  | |||||||  |||||| ||||| ||||||| || |||||
Sbjct: 266 gccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggtgtgcgg 325

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           |||||| ||| |||| ||| ||||||||||||||||||
Sbjct: 326 ccgccgccacagcgtccgcatccgcgtgcgcagcggcg 363



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>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4,
           allele A
          Length = 1603

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                       
Query: 297 accaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcgtgcgcctc 356
           |||||||| || ||| ||||| |||| || || |||||||||||||||||| | ||||||
Sbjct: 241 accaacgcctcgcacatccagtccgcggtggtgtgcggccgccggcacggcatccgcctc 300

                           
Query: 357 cgcgtgcgcagcggcg 372
           |||||||| |||||||
Sbjct: 301 cgcgtgcggagcggcg 316



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>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA
           sequence
          Length = 1805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 289 tcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcggccgccggcacggcg 348
           ||||| |||| ||||| |||||||| |||||||||||  | ||||||||||||  |||  
Sbjct: 269 tcacgccgacgaacgcctcccacgtgcaggccgccgtgctgtgcggccgccggagcgggc 328

                                   
Query: 349 tgcgcctccgcgtgcgcagcggcg 372
           ||||| ||||||||||||||||||
Sbjct: 329 tgcgcatccgcgtgcgcagcggcg 352



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>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
           allele A
          Length = 1603

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 275 gccgctctgcatcgtcacggcgaccaacgcatcccacgtccaggccgccgtcgtctgcgg 334
           |||||||| |||| ||||  | |||||||| || ||| ||||| |||| || || |||||
Sbjct: 216 gccgctctacatcatcacccccaccaacgcctcgcacatccagtccgcggtggtgtgcgg 275

                                                 
Query: 335 ccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
            ||||||||| |||| ||||||||||| || |||||||
Sbjct: 276 acgccggcacagcgtccgcctccgcgtccggagcggcg 313



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>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016D02
          Length = 157822

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 329    ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
              |||||||||||| |||  ||| ||| ||||||||||||||||||
Sbjct: 144945 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcg 144902



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>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full
           insert sequence
          Length = 2030

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 329 ctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           |||||||||||| |||  ||| ||| ||||||||||||||||||
Sbjct: 316 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcg 359



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>ref|XM_468176.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3248

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 137  tgccgccgacgacttcctccgg 158
            ||||||||||||||||||||||
Sbjct: 2883 tgccgccgacgacttcctccgg 2862



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 287    cgtcacggcgaccaacgcatcccacg 312
              ||||| ||||||||||||||||||||
Sbjct: 285909 cgtcagggcgaccaacgcatcccacg 285884



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 137      tgccgccgacgacttcctccgg 158
                ||||||||||||||||||||||
Sbjct: 33494122 tgccgccgacgacttcctccgg 33494101



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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0054K20
          Length = 153584

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 137   tgccgccgacgacttcctccgg 158
             ||||||||||||||||||||||
Sbjct: 68997 tgccgccgacgacttcctccgg 68976



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>dbj|AK072337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043H01, full
            insert sequence
          Length = 3406

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 137  tgccgccgacgacttcctccgg 158
            ||||||||||||||||||||||
Sbjct: 3041 tgccgccgacgacttcctccgg 3020



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>dbj|AK071978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I16, full
            insert sequence
          Length = 3248

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 137  tgccgccgacgacttcctccgg 158
            ||||||||||||||||||||||
Sbjct: 2882 tgccgccgacgacttcctccgg 2861



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>ref|XM_481787.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 349 tgcgcctccgcgtgcgcagcggcg 372
           ||||| ||||||||||||||||||
Sbjct: 296 tgcgcatccgcgtgcgcagcggcg 319



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>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 321 gccgtcgtctgcggccgccggcacggcgtgcgcctccgcgtgcgcagcggcg 372
           ||||| || |||||||||||  ||| ||| ||| ||||||| ||||||||||
Sbjct: 2   gccgtggtgtgcggccgccgttacgacgtccgcatccgcgtacgcagcggcg 53



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 290     cacggcgaccaacgcatcccacgt 313
               ||||| ||||||||||||||||||
Sbjct: 1198584 cacggtgaccaacgcatcccacgt 1198607



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>gb|AF363310.1| Polycope sp. OC-2001 18S ribosomal RNA gene, partial sequence
          Length = 1818

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  ggagctcgccgtcgttcgcg 218
            ||||||||||||||||||||
Sbjct: 1352 ggagctcgccgtcgttcgcg 1371



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     gccgtcgtctgcggccgccg 340
               ||||||||||||||||||||
Sbjct: 3115361 gccgtcgtctgcggccgccg 3115342



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 349      tgcgcctccgcgtgcgcagcggcg 372
                ||||| ||||||||||||||||||
Sbjct: 15504538 tgcgcatccgcgtgcgcagcggcg 15504515



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>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_B10
          Length = 148508

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 349   tgcgcctccgcgtgcgcagcggcg 372
             ||||| ||||||||||||||||||
Sbjct: 52296 tgcgcatccgcgtgcgcagcggcg 52273



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>gb|DQ231522.1| Zea mays molybdenum cofactor biosynthesis protein (Vp10) gene,
            complete cds
          Length = 10034

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 339  cggcacggcgtgcgcctccgcgtg 362
            |||||||||||||| |||||||||
Sbjct: 4340 cggcacggcgtgcggctccgcgtg 4317



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     gccgtcgtctgcggccgccg 340
               ||||||||||||||||||||
Sbjct: 3115306 gccgtcgtctgcggccgccg 3115287



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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   gccgtcgtctgcggccgccg 340
             ||||||||||||||||||||
Sbjct: 39482 gccgtcgtctgcggccgccg 39501


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,923,478
Number of Sequences: 3902068
Number of extensions: 1923478
Number of successful extensions: 38010
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37624
Number of HSP's gapped (non-prelim): 378
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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