ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46g09 |
|---|---|
| Clone Library Name | barley_pub |
>Y096_MYCGE (P47342) Hypothetical protein MG096| Length = 650 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +1 Query: 211 RIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRREDQA 333 R+E K ++EE LRR EA K +EA+ Q++ RRE +A Sbjct: 345 RLEEERKRQLEE-LRRREAEEKRKAEEAKRNQEKARREREA 384
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 220 TSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRREDQ 330 T Y+ K EE RR E +L KE+E +E + +RE++ Sbjct: 805 TYYREKEEEEQRRAEEQML-KEREERERAERAKREEE 840
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 220 TSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRREDQ 330 T Y+ K EE RR E +L KE+E +E + +RE++ Sbjct: 805 TYYREKEEEEQRRAEEQML-KEREERERAERAKREEE 840
>SYG_METKA (Q8TYY9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 571 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +1 Query: 136 ARRWAYVRIMAGTILGGGLGFYVMHRIETSYKAKMEERLRRYEAH 270 ARR ++ + A I GG GFY + K K+EE+ R Y H Sbjct: 13 ARRRGFI-LPAFRIYGGARGFYDYGPLGALLKRKIEEKWREYYVH 56
>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21| Length = 344 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 112 DLATPPPPPVEVDWSSGSTEMGCPEQRKGRGIGR 11 D ++ PPPP S G+ G ++ +GRG GR Sbjct: 169 DSSSMPPPPAPSGPSGGNDRGGDRDRGRGRGFGR 202
>Y1030_TREPA (O83993) Hypothetical protein TP1030| Length = 165 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 5/38 (13%) Frame = -3 Query: 103 TPPPPPVEVDWSSGSTEMGC-----PEQRKGRGIGRAA 5 TPPPPPV G T GC P GR G A Sbjct: 89 TPPPPPVSSTLQKGPTGAGCVTAARPAPSSGRQGGGGA 126
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 250 LRRYEAHLLAKEKEAQELQDEGRREDQ 330 LR+ EA AKE + + LQDE R++D+ Sbjct: 977 LRKVEAEKNAKEHQIRALQDEMRQQDE 1003
>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)| Length = 500 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 226 YKAKMEERLRRYEAHLLAKEKEAQELQD 309 Y +K EE+L + + +L+AK K+ LQD Sbjct: 152 YHSKQEEKLLKSQRNLVAKMKKVMHLQD 179
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -3 Query: 118 LTDLATPPPPPVEVDWSSGSTEMGCPEQ 35 LTDL P P GS+E+G PEQ Sbjct: 306 LTDLEQPGSPGYSTATEPGSSELGVPEQ 333
>FOXB1_MOUSE (Q64732) Forkhead box protein B1 (Transcription factor FKH-5)| Length = 325 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 9 ALPIPLPFLCSGHPISVEPDDQSTST 86 ALP P+P L S P S+ P T+T Sbjct: 275 ALPAPIPTLLSNSPPSLSPTSSQTAT 300
>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)| (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) Length = 911 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +1 Query: 229 KAKMEERLRRYEAHLLAKEKEAQELQDEGRRE 324 K K+ E +RR + K++E +EL+++ RRE Sbjct: 329 KEKLREEIRRAKEEARKKKEEEKELKEKERRE 360
>SDHD_BACSU (P54555) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 448 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +1 Query: 175 ILGGGLGFYVMHRIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRRE 324 I+G LGF V + K ++ LR+ ++ E + E +EGRR+ Sbjct: 176 IIGAALGFRVTVHMSADAKQWKKDLLRQKGVTVMEYETDYSEAVNEGRRQ 225
>FOXB1_HUMAN (Q99853) Forkhead box protein B1 (Transcription factor FKH-5)| Length = 324 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 9 ALPIPLPFLCSGHPISVEPDDQSTST 86 ALP P+P L S P S+ P T+T Sbjct: 274 ALPAPIPTLLSNSPPSLSPTSSQTAT 299
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of| white apricot protein homolog) Length = 951 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 103 TPPPPPVEVDWSSGST 56 TPPPPP + SSG+T Sbjct: 419 TPPPPPTTAETSSGAT 434
>SCAM1_RAT (P56603) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) (SCAMP 37) Length = 338 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 208 HRIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRRED 327 H + + K +E L R A L +E+E Q L GR+ + Sbjct: 80 HALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNN 119
>SCAM1_PIG (O77735) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 208 HRIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRRED 327 H + + K +E L R A L +E+E Q L GR+ + Sbjct: 80 HALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNN 119
>SCAM1_MOUSE (Q8K021) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 208 HRIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRRED 327 H + + K +E L R A L +E+E Q L GR+ + Sbjct: 80 HALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNN 119
>SCAM1_HUMAN (O15126) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 208 HRIETSYKAKMEERLRRYEAHLLAKEKEAQELQDEGRRED 327 H + + K +E L R A L +E+E Q L GR+ + Sbjct: 80 HALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNN 119
>LGT_THET8 (Q5SLA9) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 279 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +1 Query: 169 GTILGGGLGFYVMHR 213 G ILGGGL FY HR Sbjct: 87 GAILGGGLTFYYFHR 101
>RAD50_PYRHO (O58687) DNA double-strand break repair rad50 ATPase| Length = 879 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/27 (37%), Positives = 21/27 (77%) Frame = +1 Query: 229 KAKMEERLRRYEAHLLAKEKEAQELQD 309 K ++EER+R+ E+ + K K+++EL++ Sbjct: 257 KGRLEERIRQLESGIEEKRKKSKELEE 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,393,072 Number of Sequences: 219361 Number of extensions: 397392 Number of successful extensions: 2745 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2734 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
