ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46g07 |
|---|---|
| Clone Library Name | barley_pub |
>SRGP2_MOUSE (Q812A2) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2)| (WAVE-associated Rac GTPase-activating protein) (WRP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 33.9 bits (76), Expect = 0.18 Identities = 24/74 (32%), Positives = 29/74 (39%) Frame = +1 Query: 121 SSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQV 300 SS+P LH + + K A S R AG + RP P R P V Sbjct: 1006 SSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGAQL-RPPPMRPVRPVV 1064 Query: 301 QHRPPGSRPNGHGS 342 QHR S +G GS Sbjct: 1065 QHRSSSSSSSGVGS 1078
>SRGP2_HUMAN (O43295) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2)| (WAVE-associated Rac GTPase-activating protein) (WRP) (Mental disorder-associated GAP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 33.9 bits (76), Expect = 0.18 Identities = 24/74 (32%), Positives = 29/74 (39%) Frame = +1 Query: 121 SSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQV 300 SS+P LH + + K A S R AG + RP P R P V Sbjct: 1006 SSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGAQL-RPPPMRPVRPVV 1064 Query: 301 QHRPPGSRPNGHGS 342 QHR S +G GS Sbjct: 1065 QHRSSSSSSSGVGS 1078
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 33.5 bits (75), Expect = 0.24 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 8/101 (7%) Frame = +1 Query: 37 PATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQH--------ERTQLVXXX 192 P+ +GH + P PT I+SP+ QP P H R Sbjct: 169 PSPPSRHGHPPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPPTHVQPTPSPPSRGHQPQPP 228 Query: 193 XXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPP 315 A P+ +P+ L P+P R P+P PP Sbjct: 229 THRHAPPTHRHAPPTHQPSPLRHLPPSPRRQPQPPTYSPPP 269
>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1377 Score = 33.5 bits (75), Expect = 0.24 Identities = 29/109 (26%), Positives = 39/109 (35%) Frame = +1 Query: 28 ATTPATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXX 207 AT+P + G R L S PT + + + LSSP Sbjct: 218 ATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPLSSP--------------AS 263 Query: 208 XXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNGHGSEHPR 354 +PSG+ G P R + +PP SRP+G SE PR Sbjct: 264 SGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGARSESPR 312
>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (Myc intron-binding protein 1) (MIBP-1) Length = 2430 Score = 33.5 bits (75), Expect = 0.24 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +2 Query: 137 KDSTFLPPSTNEHSSSDGASRFAPDDEEEKPRHRVGRPGSSATDRRRAVTPNH-KSSTGR 313 KD F S++ S S +S+ P P +R PGS A RR+ P+ + S+ Sbjct: 1493 KDGCFQSRSSSFSSLSPSSSQDHPSASGPFPPNREILPGSRAPPRRKFSGPSESRESSDE 1552 Query: 314 LDPDPTAMDPSIQGNRS 364 LD D T+ D S+ S Sbjct: 1553 LDMDETSSDMSMSPQSS 1569
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 32.7 bits (73), Expect = 0.40 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = +2 Query: 188 GASRFAPDDEEEKPRHRVGR-----PGSSATDRRRAVTPNHKSSTGRLDPDPTAMDPS 346 G + + DDE E R G PG AT RRA + +H+S+ P P A+ P+ Sbjct: 1166 GEGKGSTDDEAEDSRPSTGTHPGASPGPRATPLRRAESLDHRSTLDLCPPRPAALLPT 1223
>ISL1_CAEEL (Q8MPZ7) Putative trypsin inhibitor isl-1 precursor (Inhibitor of| serine protease-like protein 1) Length = 100 Score = 32.3 bits (72), Expect = 0.52 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 182 TSCVRSCWGEERWSLCCGCEEEVGEKMRVGMGVGVEARARCP 57 T V+ C E W +C CEEE G+ + + AR +CP Sbjct: 36 TEEVKPCGLNEVWMVCSSCEEECGKTPQPCPRICQPARCQCP 77
>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516| Length = 1157 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 218 EEKPRHRVGRPGSSATDRRRAVTPNHKSSTGRLDPDPTA 334 +EK + P + A R+RA P +G LDP PT+ Sbjct: 450 QEKRKREQDAPATQAPPRKRASVPGDPMLSGHLDPRPTS 488
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Frame = +2 Query: 188 GASRFAPDDEEEKPR-----HRVGRPGSSATDRRRAVTPNHKSSTGRLDPDPTAMDPS 346 G + + DDE E R H PG AT RRA + H+S+ P P + P+ Sbjct: 1166 GEGKGSTDDEAEDSRPNSGTHPGASPGPRATPLRRAESLGHRSTMDLCPPRPATLLPT 1223
>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein homolog) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 960 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +2 Query: 233 HRV-GRPGSSATDRRRAVTPNHKSSTGRLDPDPTAMDPSIQGNRSGGT 373 HRV G PG S +R A TP + D DP A++P + +R GT Sbjct: 4 HRVPGGPGPSDPERSAANTPG-AAPLACADSDPGALEPGLPVSRGSGT 50
>NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precursor| (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L) Length = 1115 Score = 30.4 bits (67), Expect = 2.0 Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Frame = +1 Query: 112 PTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRPAP--CRD 285 P+SSS PQ L H AP AG +RD P P R Sbjct: 29 PSSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPRAASRAPDDSRAGAQRDEPEPGTRRS 88 Query: 286 PEPQVQHR----------PPGSRPNGHGS 342 P P R PPGSR G G+ Sbjct: 89 PAPSPGARWLGSTLHGRGPPGSRKPGEGA 117
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 30.4 bits (67), Expect = 2.0 Identities = 25/113 (22%), Positives = 40/113 (35%) Frame = +1 Query: 4 SCMYGRTHATTPATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLV 183 S + + +TP T H + P P+P + PQQ+ L Q ++ Q + Sbjct: 74 SVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQQQQL 133 Query: 184 XXXXXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNGHGS 342 P+G A ++ +P PQ Q P S +G S Sbjct: 134 ATTPVAGALSPA--QTPTGPSAQQQQHLTSPHHQQLPQQQ--TPNSVASGASS 182
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 30.4 bits (67), Expect = 2.0 Identities = 25/91 (27%), Positives = 36/91 (39%) Frame = +1 Query: 70 LASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPA 249 L STP+P+P+ + SPT +Q L +S AA G+ + Sbjct: 198 LPSTPSPVPSPVLSPTQ----EQALAPAS-------------------TASGAASVGQTS 234 Query: 250 GLERDRPAPCRDPEPQVQHRPPGSRPNGHGS 342 +RD PAP P + +PP GS Sbjct: 235 ARKRDAPAPRPLPASEGHLQPPAQTSGPTGS 265
>2A5D_HUMAN (Q14738) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (PP2A, B subunit, B56 delta isoform) (PP2A, B subunit, PR61 delta isoform) (PP2A, B subunit, R5 delta isoform) Length = 602 Score = 30.0 bits (66), Expect = 2.6 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Frame = +1 Query: 223 KAAPSGRPAG---LERDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 K + SG+ G E +P P P+PQ Q +PP S S P Sbjct: 20 KPSSSGKDGGGENTEEAQPQPQPQPQPQAQSQPPSSNKRPSNSTPP 65
>CHMU_ARATH (P42738) Chorismate mutase, chloroplast precursor (EC 5.4.99.5)| (CM-1) Length = 334 Score = 30.0 bits (66), Expect = 2.6 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +1 Query: 19 RTHATTPATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERT 174 R+ + A + HR ST TPI TL+ P++ S R L P R+ Sbjct: 2 RSSCCSSAIGGFFDHRRELSTSTPISTLLPLPSTKSSFSVRCSLPQPSKPRS 53
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 29.6 bits (65), Expect = 3.4 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Frame = +2 Query: 143 STFLPPSTNEHSSSDGASRFAPDDEEEKPRHRV------GRPGSSATDRRRAVTPNHKSS 304 S L P + SS G S PDD R R RP S T RRR+ +P S+ Sbjct: 15 SPSLSPPRPDSRSSRGRS-LTPDDIPAYKRKRSPSPNPRDRPASPPTRRRRSQSPYRNSN 73 Query: 305 TGRLD-PDPTAMDPS 346 +D P+ +DP+ Sbjct: 74 RAEIDRPNVKDIDPN 88
>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Apoptosis-associated nuclear protein) (Proline- and histidine-rich protein) (Proline- and glutamine-rich protein) (PQ-rich protein) Length = 259 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 P +P + +P P P+PQ Q P P+ H HP Sbjct: 181 PQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHP 220
>SDC_CAEEL (P50605) Probable syndecan precursor| Length = 288 Score = 29.6 bits (65), Expect = 3.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 194 SRFAPDDEEEKPRHRVGRPGSSATDRRRAVT-PNHKSSTGRLDPDPT 331 S + DDE+ H G+P SSAT + VT P+H T + PT Sbjct: 71 SGYPTDDEDGDDVHGSGKPPSSATTKSDKVTSPSHAVVTAKPTTVPT 117
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P G+ R AP P P ++ PPG R P G PR Sbjct: 198 PMGPPMGMPPGRGAPMGMPPPGMRPPPPGMRGPPPPGMRPPR 239
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 29.6 bits (65), Expect = 3.4 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P G+ R AP P P ++ PPG R P G PR Sbjct: 198 PMGPPMGMPPGRGAPMGMPPPGMRPPPPGMRGPPPPGMRPPR 239
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1206 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 1256 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 1257 SDEPTPSETPEEPIPTDTPSDEP 1279 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1163 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 1213 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 1214 SDEPTPSETPEEPIPTDTPSDEP 1236 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1120 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 1170 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 1171 SDEPTPSETPEEPIPTDTPSDEP 1193 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1077 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 1127 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 1128 SDEPTPSETPEEPIPTDTPSDEP 1150 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1034 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 1084 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 1085 SDEPTPSETPEEPIPTDTPSDEP 1107 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 881 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 931 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 932 SDEPTPSETPEEPIPTDTPSDEP 954 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 838 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 888 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 889 SDEPTPSETPEEPIPTDTPSDEP 911 Score = 29.6 bits (65), Expect = 3.4 Identities = 21/83 (25%), Positives = 28/83 (33%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 795 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------SDEPTPSDEPTPSDEPT--P 845 Query: 259 RDRPAPCRDPEPQVQHRPPGSRP 327 D P P PE + P P Sbjct: 846 SDEPTPSETPEEPIPTDTPSDEP 868 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/91 (24%), Positives = 30/91 (32%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1304 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------------SDEPTPSDEPT--P 1348 Query: 259 RDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 D P P +P P + P E P Sbjct: 1349 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1379 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/91 (24%), Positives = 30/91 (32%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 1249 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------------SDEPTPSDEPT--P 1293 Query: 259 RDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 D P P +P P + P E P Sbjct: 1294 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1324 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/91 (24%), Positives = 30/91 (32%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 979 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------------SDEPTPSDEPT--P 1023 Query: 259 RDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 D P P +P P + P E P Sbjct: 1024 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 1054 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/91 (24%), Positives = 30/91 (32%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLE 258 TP+ PT PT S P++ + +P E T + PS P Sbjct: 924 TPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP-------------SDEPTPSDEPT--P 968 Query: 259 RDRPAPCRDPEPQVQHRPPGSRPNGHGSEHP 351 D P P +P P + P E P Sbjct: 969 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEP 999
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = +1 Query: 16 GRTHATTPATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQ 162 GRT + A S G R+ + P P+PT SP+ +S P+ SSPQ Sbjct: 2836 GRTSSGFRAESPGPGSRSSSPKPKPLPTPRSSPSGASSPRS----SSPQ 2880
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.3 bits (64), Expect = 4.4 Identities = 30/121 (24%), Positives = 35/121 (28%), Gaps = 17/121 (14%) Frame = +1 Query: 22 THATTPATSYMYGHRALASTPTPIPTLIFSPT-----------------SSSQPQQRLHL 150 T TP T+ + + TPTP T PT SS PQ Sbjct: 4168 TGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESSTPQTSRST 4227 Query: 151 SSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPN 330 SSP E T L+ AP P P P PPG+ Sbjct: 4228 SSPLTESTTLL---STLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTR 4284 Query: 331 G 333 G Sbjct: 4285 G 4285
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 29.3 bits (64), Expect = 4.4 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 3/109 (2%) Frame = +1 Query: 19 RTHATTPATSYM-YGHRALA--STPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXX 189 R TP TS GH ++ S P P P P QPQ + + Q Sbjct: 2887 RQPVATPTTSARPRGHLTVSRLSAPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQ---- 2942 Query: 190 XXXXXXXXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNGH 336 + P +P + +P P P+PQ Q +P NGH Sbjct: 2943 --------PQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQNGH 2983
>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1371 Score = 29.3 bits (64), Expect = 4.4 Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 1/110 (0%) Frame = +1 Query: 28 ATTPATSYMYGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXX 207 AT+P + G R L S PT + + + LSSP Sbjct: 218 ATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPLSSP--------------AS 263 Query: 208 XXXXXKAAPSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNG-HGSEHPR 354 +PSG+ G P R + +PP SRP+G S+ PR Sbjct: 264 SGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSGSRSSDSPR 313
>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 625 Score = 29.3 bits (64), Expect = 4.4 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQ--QRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAG 252 +P P P I +P + QPQ QR H P H+ Q +P+ P Sbjct: 421 SPPPKPAAIAAPPAQQQPQQRQRQHPPVPSHQAAQ----------------QSPAAAP-- 462 Query: 253 LERDRPAPCRDPEPQVQHRPPGSRPNGHGSEHPR 354 +++ + + + Q Q +P + G G P+ Sbjct: 463 VQQQQQQQQQQQQQQQQQQPQYQQAYGQGPPQPQ 496
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 29.3 bits (64), Expect = 4.4 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 39/146 (26%) Frame = +1 Query: 28 ATTPATSYMYGHRALASTP-TPIPTLIFSPT-----SSSQPQQRLHLSSPQHERTQLVXX 189 +T+ ++ G R L TP TP P + +SP S PQQ+ Q ++ Q V Sbjct: 2273 STSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQ----QQQQQQQQAVAR 2328 Query: 190 XXXXXXXXXXXKAAP----------------SGRPAGLERDRPAPCRDPEPQ-------- 297 P SGR +ER P P R P+ Sbjct: 2329 PGRAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRVPGPARSESPRACRHGGAR 2388 Query: 298 -------VQHRPPGSRPNGH--GSEH 348 V PPG R +G+ GS++ Sbjct: 2389 WPASGPHVSEGPPGPRHHGYYRGSDY 2414
>VGLZ_EHV1K (P32515) Glycoprotein precursor| Length = 383 Score = 29.3 bits (64), Expect = 4.4 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 1/91 (1%) Frame = +1 Query: 73 ASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAG 252 +S+PT P PT+SS P H SSP Q G P G Sbjct: 50 SSSPTTSP-----PTTSSSPPTSTHTSSPSTANAQ------KHAGHHRGRAGGRRGSPQG 98 Query: 253 LERDRPAPCR-DPEPQVQHRPPGSRPNGHGS 342 P P R P P + + PNG + Sbjct: 99 GSHTTPHPDRLTPSPDDTYDDDTNHPNGRNN 129
>IF2_ANASP (Q8YQJ1) Translation initiation factor IF-2| Length = 1039 Score = 28.9 bits (63), Expect = 5.8 Identities = 23/71 (32%), Positives = 30/71 (42%) Frame = +2 Query: 158 PSTNEHSSSDGASRFAPDDEEEKPRHRVGRPGSSATDRRRAVTPNHKSSTGRLDPDPTAM 337 P+ E SS+ + P KP RV RPG+ + D R P S+ D P A Sbjct: 249 PAQGETSSAPVQKQARPAQGLVKPEQRVNRPGAPSGDGIRPQRPVRPSA----DAAPVAT 304 Query: 338 DPSIQGNRSGG 370 P +G GG Sbjct: 305 PP--RGVPGGG 313
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Frame = +2 Query: 167 NEHSSSDGASRFAPDDEEEKPRH-RVGRPGSSATDRRRAVTPNHKSSTGRLDPDPTAMDP 343 N+ SSSD S + +DE K H + G G RRR +P+ +S P P Sbjct: 489 NQQSSSDSGSSSSSEDERPKRSHVKNGEVG-----RRRRHSPSRSAS-----PSPRKRQK 538 Query: 344 SIQGNRSGGTRW 379 G RW Sbjct: 539 ETSPRMQMGKRW 550
>OGFR_HUMAN (Q9NZT2) Opioid growth factor receptor (OGFr) (Zeta-type opioid| receptor) (7-60 protein) Length = 677 Score = 28.9 bits (63), Expect = 5.8 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 9/62 (14%) Frame = +2 Query: 212 DEEEKPRHRVGRPGSSATDRRRAVTPNHKSSTGRLD--PDPTAMDPS-------IQGNRS 364 +EE P G P A+ + R P H GR+D P P +++P QG+ + Sbjct: 311 EEEGSP----GDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSVEPQDAGPLERSQGDEA 366 Query: 365 GG 370 GG Sbjct: 367 GG 368
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRP-PGSRPNGHGSEHP 351 P RP R P P +P PQ + +P P SRP P Sbjct: 527 PRPRPESRPRPEPRPRPEPRPQPESQPRPESRPRPESQPWP 567
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 19 RTHATTPATSYMYGHRALASTPTPIPTLIFSPTSSS----QPQQRLHLSSPQ 162 R TP +S H + +P P+PTL+ P+ + QQR++ +SP+ Sbjct: 613 RPRTPTPISS----HLLVDQSPKPVPTLVVRPSRPAPLPPPAQQRMNTASPK 660
>YC66L_SYNY3 (Q55823) Ycf66-like protein| Length = 337 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSRPNGHGSEHPRK 357 PS RP R RP DP P + RP + PN + P + Sbjct: 219 PSRRPP-TRRPRPEAGNDPAPSRRPRPSNNPPNDSFGDRPER 259
>PHLA1_RAT (Q9QZA1) Pleckstrin homology-like domain family A member 1| (Proline- and glutamine-rich protein) (PQR protein) Length = 263 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/83 (25%), Positives = 33/83 (39%) Frame = +1 Query: 103 IFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRPAPCR 282 I + S+ Q QQ HL Q +TQ + + +P + +P P + Sbjct: 142 ILAVKSTRQKQQ--HLVQQQPPQTQQIQPQPQQPQIQPQPQPQIQPQPQPQPQPQPQPQQ 199 Query: 283 DPEPQVQHRPPGSRPNGHGSEHP 351 P+PQ H P P+ + HP Sbjct: 200 QPQPQQLHSYPHPHPHLYPHPHP 222
>ASTL_MOUSE (Q6HA09) Astacin-like metalloendopeptidase precursor (EC 3.4.-.-)| (Oocyte astacin) (Ovastacin) Length = 435 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 259 RDRPAPCRDPEPQVQHRPPGSRPNGHGSEHPR 354 RD+PAP +D ++ P G P H E PR Sbjct: 403 RDKPAPIQDAFERLAPLPGGCAPGSHIREVPR 434
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +1 Query: 4 SCMYGRTHATTPATSYM-YGHRALASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERT 174 S M+GR TS + G + + ++P P+ T ++ SQ Q + ++ PQ+ T Sbjct: 799 SHMFGRVQNIPACTSTVSQGQQLITTSPQPVQTSSQQTSAGSQSQDTVIIAPPQYVTT 856
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.5 bits (62), Expect = 7.6 Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 4/107 (3%) Frame = +2 Query: 14 TAERTRPPPLRPICTGIAXXXXXXXXXXXXXXXXXXXXXXXKDSTFLPPSTNEHSSSDGA 193 T R PPP R + + PP S Sbjct: 323 TPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTVSSPPRKT 382 Query: 194 SRFAPDDEEEKPRHRVGRPGSSATDRRRAVTPNH----KSSTGRLDP 322 R +P + RHR P S RR+ TP + S G + P Sbjct: 383 RRLSPSASPPRRRHRPSPPASPPPKPRRSPTPQQSNRARKSRGSVSP 429
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 7.6 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = +2 Query: 167 NEHSSSDGASRFAPDDEEEKPRH-RVGRPGSSATDRRRAVTPNHKSSTGRLDPDPTAMDP 343 N+ SSSD S +DE K H + G G RRR +P+ +S P P Sbjct: 487 NQQSSSDSGSSSTSEDERPKRSHVKNGEVG-----RRRRHSPSRSAS-----PSPRKRQK 536 Query: 344 SIQGNRSGGTRW 379 G RW Sbjct: 537 ETSPRMQMGKRW 548
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 28.1 bits (61), Expect = 9.9 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Frame = +1 Query: 82 PTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLER 261 P P+PTL+ PT ++ ++++ + P R +L K + R ++R Sbjct: 149 PRPVPTLVPPPTRPTKKEEKVAATPP--PRKELKEPPKKEKGAIAAAKPSSQDRIEIVQR 206 Query: 262 D-RPAPCRDPE-------PQVQHRP-PGSRPN 330 PAP + PE P++Q P P PN Sbjct: 207 AVPPAPAKPPEMAPKPALPELQPPPKPVRAPN 238
>EMS_DROME (P18488) Homeotic protein empty spiracles| Length = 497 Score = 28.1 bits (61), Expect = 9.9 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Frame = +1 Query: 73 ASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAG 252 +S P+ PTL+ S ++ PQQ+ P + + ++ P PAG Sbjct: 215 SSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMM------HPGGAGPMMMPGMPPAG 268 Query: 253 LERDRP-APCRDPEPQVQ 303 L R P P P PQ Q Sbjct: 269 LVRPFPMGPGGPPMPQGQ 286
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/86 (24%), Positives = 33/86 (38%) Frame = +1 Query: 73 ASTPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAG 252 A TP+P+PT+ P + + +P+ RT ++ P G P+ Sbjct: 2032 APTPSPLPTVAAPPRRRPSSFVTVRVKTPR--RTPIMPTANIKL---------PPGLPSH 2080 Query: 253 LERDRPAPCRDPEPQVQHRPPGSRPN 330 L R P P + PP RP+ Sbjct: 2081 LPRWAPGAREAAAPVRRREPPARRPD 2106
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +2 Query: 212 DEEEKPRHRVGRPGSSATDRRRAVTPNHKSSTGRL-----DPDPTAMDPSIQGNRSGG 370 DE +K ++ PGS +T + TP K +TG L P P A P + + GG Sbjct: 1689 DETQKENNKGATPGSRST----SATPMEKENTGELSSAMDSPTPVA-TPDVAVDNGGG 1741
>IAA3_ORYSA (Q5NB25) Auxin-responsive protein IAA3 (Indoleacetic acid-induced| protein 3) Length = 263 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 155 PPSTNEHSSSDGASRFAPDDEEEKPRHRVGRPGSSATDRRRA 280 PP SSS A+R A D + + R+G PGS + DRR A Sbjct: 14 PPPPPPSSSSAAAAR-ADDVDLKGTELRLGLPGSESPDRRPA 54
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P GL R P P P ++ PPG R P G PR Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPR 239
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P GL R P P P ++ PPG R P G PR Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPR 239
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P GL R P P P ++ PPG R P G PR Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPR 239
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +1 Query: 232 PSGRPAGLERDRPAPCRDPEPQVQHRPPGSR-PNGHGSEHPR 354 P G P G+ R P P P ++ PPG R P G PR Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPR 239
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = +1 Query: 118 SSSQPQQRLHLSSPQHERTQLVXXXXXXXXXXXXXKAAPSGRPAGLERDRP--APCRDPE 291 S+S P + + + +P + + A RPAG + P AP R PE Sbjct: 1076 SASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPLRPPE 1135 Query: 292 PQVQHRPPGSRPN 330 P P RP+ Sbjct: 1136 PPAGPPAPAPRPD 1148
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 167 NEHSSSDGASRFAPDDEEEKPRHRVGRPGSSAT--DRRRAVTPNHKSSTG 310 + H SS +S+ D+E R GSS++ D+ + + HKSS+G Sbjct: 83 DRHKSSSSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSG 132
>CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) (RING finger protein 56) Length = 982 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +1 Query: 268 PAPCRDPEPQVQHRPPGSRPNGHGSEH 348 P P RDP P RPP P+ S H Sbjct: 548 PPPLRDPPPPPPERPPPIPPDNRLSRH 574
>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9| Length = 473 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 79 TPTPIPTLIFSPTSSSQPQQRLHLSSPQHERTQL 180 TPTP+P + SPT + P + + + PQH + L Sbjct: 3 TPTPLPPVPASPTCNPAP-RTIQIEFPQHSSSLL 35
>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)| Length = 567 Score = 28.1 bits (61), Expect = 9.9 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%) Frame = +2 Query: 137 KDSTFLPPSTNEHSSSDGASRFAPDDEEEKPRHRVGRPGSSATDRRRAVTPNHKSSTGRL 316 KD P+ ++ S G P E E P H G P S+ P S++ Sbjct: 21 KDKGQKSPAEQKNLSDSGEE---PRGEAEAPHHGTGHPESAGEHALEPPAPAGASASTPP 77 Query: 317 DPDPTAMDP----SIQGNRSGGT 373 P P A P + G +GG+ Sbjct: 78 PPAPEAQLPPFPRELAGRSAGGS 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,767,278 Number of Sequences: 219361 Number of extensions: 989665 Number of successful extensions: 4390 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 3657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4289 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
