ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast46f10 |
|---|---|
| Clone Library Name | barley_pub |
>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 377 Score = 245 bits (625), Expect = 5e-65 Identities = 120/124 (96%), Positives = 121/124 (97%) Frame = +1 Query: 94 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 273 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD Sbjct: 1 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 60 Query: 274 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 453 WLESKGHHYIVTDDKEG NSELEKHIEDMHVLITTPFHPAYVTAE+IKKAK ELLLTAG Sbjct: 61 WLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAG 120 Query: 454 IGSD 465 IGSD Sbjct: 121 IGSD 124
>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1) Length = 376 Score = 233 bits (595), Expect = 1e-61 Identities = 113/122 (92%), Positives = 118/122 (96%) Frame = +1 Query: 100 AMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWL 279 AMWRAAA L+ RA+GSRAAHTSAGSKKIVGVFY+ GEYADKNPNFVGCVEGALGIR+WL Sbjct: 2 AMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWL 61 Query: 280 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 459 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYV+AERIKKAKNLELLLTAGIG Sbjct: 62 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIG 121 Query: 460 SD 465 SD Sbjct: 122 SD 123
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 210 bits (535), Expect = 1e-54 Identities = 103/124 (83%), Positives = 111/124 (89%), Gaps = 2/124 (1%) Frame = +1 Query: 100 AMWRA--AARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 273 AMWRA AA QL+ RA+ S AA TSAGSKK+VGVFY+ GEYADKNPNFVGCV+ ALGIR Sbjct: 2 AMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRG 61 Query: 274 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 453 WLESKGH YIVTDDKEG+N ELEKHIED HVLITTPFHPAY+TAERIKKAKNLELLLTAG Sbjct: 62 WLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAG 121 Query: 454 IGSD 465 +GSD Sbjct: 122 VGSD 125
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 175 bits (444), Expect = 4e-44 Identities = 84/101 (83%), Positives = 92/101 (91%) Frame = +1 Query: 163 TSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELE 342 +S SKKIVGVFY+A EYA KNPNF+GCVE ALGIRDWLES+GH YIVTDDKEG + ELE Sbjct: 31 SSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELE 90 Query: 343 KHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 KHI D+HVLI+TPFHPAYVTAERIKKAKNL+LLLTAGIGSD Sbjct: 91 KHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSD 131
>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 381 Score = 174 bits (440), Expect = 1e-43 Identities = 87/128 (67%), Positives = 102/128 (79%), Gaps = 2/128 (1%) Frame = +1 Query: 88 VSMAAMWRAAARQLVDRA--VGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGAL 261 ++M+ + AAR + + V +R S G KKIVGVFY+A EYA+ NPNF+GC E AL Sbjct: 1 MAMSRVASTAARAITSPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENAL 60 Query: 262 GIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELL 441 GIR+WLESKGH YIVT DKEG + ELEKHI D+HVLI+TPFHPAYVTAERIKKAKNL+LL Sbjct: 61 GIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLL 120 Query: 442 LTAGIGSD 465 LTAGIGSD Sbjct: 121 LTAGIGSD 128
>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 361 Score = 124 bits (310), Expect = 2e-28 Identities = 58/95 (61%), Positives = 70/95 (73%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 360 K+V V Y AG++A GC E ALGIRDWLE +GH +VT DKEG NS LEK+I D Sbjct: 1 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDA 60 Query: 361 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 V+I+TPFHPAY+T ERI KAK L+LL+ AG+GSD Sbjct: 61 DVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSD 95
>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 375 Score = 109 bits (273), Expect = 3e-24 Identities = 46/95 (48%), Positives = 68/95 (71%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 360 K++ V Y G++ ++ P +G ++ LG+R WLE +GH + T DK+G NS +K +ED Sbjct: 3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDA 62 Query: 361 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++ITTPFHP Y+TAER+ +AK L+L +TAGIGSD Sbjct: 63 EIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSD 97
>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase) (FDH) Length = 377 Score = 108 bits (271), Expect = 5e-24 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +1 Query: 193 VFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLI 372 V Y G +A P +G E LGIR W+E +GH + T DK+G NS +K + D V+I Sbjct: 2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVII 61 Query: 373 TTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 TTPFHP Y+TAER+ KAKNL+L +TAGIGSD Sbjct: 62 TTPFHPGYLTAERLAKAKNLKLAVTAGIGSD 92
>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 400 Score = 90.1 bits (222), Expect = 2e-18 Identities = 44/76 (57%), Positives = 56/76 (73%) Frame = +1 Query: 238 VGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIK 417 +G V G LG+R +LES GH +VT DK+G +S E+ + D V+I+ PF PAY+T ERI Sbjct: 50 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIA 109 Query: 418 KAKNLELLLTAGIGSD 465 KAKNL+L LTAGIGSD Sbjct: 110 KAKNLKLALTAGIGSD 125
>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 2) Length = 376 Score = 89.7 bits (221), Expect = 3e-18 Identities = 39/96 (40%), Positives = 68/96 (70%), Gaps = 1/96 (1%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 357 K++ V Y+ G++A++ +GC+E LGIR+++E +G+ + T DK+ S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 358 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++ITTPF PAY++ RI +A NL+L +TAG+GSD Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSD 100
>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 1) Length = 376 Score = 89.7 bits (221), Expect = 3e-18 Identities = 39/96 (40%), Positives = 68/96 (70%), Gaps = 1/96 (1%) Frame = +1 Query: 181 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGL-NSELEKHIED 357 K++ V Y+ G++A++ +GC+E LGIR+++E +G+ + T DK+ S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 358 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSD 465 ++ITTPF PAY++ RI +A NL+L +TAG+GSD Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSD 100
>AKSF_METJA (Q58991) Threo-isocitrate dehydrogenase [NAD] (EC 1.1.1.-)| Length = 347 Score = 33.1 bits (74), Expect = 0.36 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Frame = +1 Query: 133 DRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNF-VGCVEGA--LGIRDWL------ES 285 D A+ R T GS++I+ + EYA KN V C+ A L I D L E Sbjct: 144 DTAIAERVI-TRKGSERIIRFAF---EYAIKNNRKKVSCIHKANVLRITDGLFLEVFNEI 199 Query: 286 KGHHYIVTDDK--EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 459 K H+ I DD + L KH E V++TT ++ E L L +A IG Sbjct: 200 KKHYNIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIG 259 Query: 460 SD 465 D Sbjct: 260 DD 261
>MOAB_STAAW (Q8NV99) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 378 CV L D S H+ IV D+K + ++++K + ED+ V+ITT Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAS (Q6G747) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 378 CV L D S H+ IV D+K + ++++K + ED+ V+ITT Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAN (P99137) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 378 CV L D S H+ IV D+K + ++++K + ED+ V+ITT Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAM (P65406) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 378 CV L D S H+ IV D+K + ++++K + ED+ V+ITT Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MOAB_STAAC (Q5HDT2) Molybdenum cofactor biosynthesis protein B| Length = 168 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 244 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 378 CV L D S H+ IV D+K + ++++K + ED+ V+ITT Sbjct: 34 CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79
>MIA40_CANGA (Q6FW26) Intermembrane space import and assembly protein 40,| mitochondrial precursor (Mitochondrial import inner membrane translocase TIM40) Length = 404 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = +1 Query: 214 YADKNPNFVGCVEGALGIRDWLESKGHHYI--VTDDKEGLNSELEKHI---EDMHVLITT 378 Y++ P + CVE ++D HY + D + N + EK++ +D V T Sbjct: 315 YSEAEPKGIDCVEKFQHMQDCFRRYPEHYAEQLADPADDENVDHEKNLSEGKDTGVDSTP 374 Query: 379 PFHPAYVTAERIKK 420 P AY+ E+ KK Sbjct: 375 PKDEAYLKTEKEKK 388
>TCPE_ARATH (O04450) T-complex protein 1 subunit epsilon (TCP-1-epsilon)| (CCT-epsilon) Length = 535 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +1 Query: 247 VEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHV-LITTPFHP 390 VEG +G + LE Y + DK+ + ++ K IED H+ ++T PF P Sbjct: 207 VEGKVGGK--LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEP 253
>ARCB_HAEIN (P44578) Aerobic respiration control sensor protein arcB homolog| (EC 2.7.13.3) Length = 325 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 292 HHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGS 462 +H+IV D G++ E +KHI +M+ + + + + +KNL L+ G S Sbjct: 269 YHFIVKDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMGRGFNS 325
>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169| Length = 263 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +1 Query: 298 YIVTDDKEGLNSELEKH--IEDMHVLITTPFHPAYVTAERIKKAKNL 432 Y++ D GLN E+ H I D +L+ TP + + A R+K++ + Sbjct: 114 YVIIDAPAGLNREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEM 160
>NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6 (Cnr8)| Length = 619 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -1 Query: 254 PSTQPTKLGFLSAY-SPAW*NTPTIFLLPADVCAALDPTARSTSCLAAALHIAAMETEGS 78 P++ P GFL ++ +P +TPT F +P++ D + A LH A EG Sbjct: 229 PTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETALDADKMCAVCNDRAVCLHYGARTCEGC 288 Query: 77 R 75 + Sbjct: 289 K 289 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,396,953 Number of Sequences: 219361 Number of extensions: 1108781 Number of successful extensions: 3702 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3696 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
