>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1|
           with RanBPM) (Twa1)
          Length = 228

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 32/71 (45%), Positives = 52/71 (73%)
 Frame = +1

Query: 202 SMATSKKVVTRDEWEGKLRDAKIRKEDMNRLVMNFLVTEGLVDAAHRFRLESGTQPEIDL 381
           S A     +T+DEW  KL +  +++ DMNRL+MN+LVTEG  +AA +FR+ESG +P +DL
Sbjct: 2   SYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDL 61

Query: 382 ATITDRMEVKK 414
            T+ +R+++++
Sbjct: 62  ETLDERIKIRE 72

>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with|
           RanBPM) (Twa1)
          Length = 228

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 32/71 (45%), Positives = 52/71 (73%)
 Frame = +1

Query: 202 SMATSKKVVTRDEWEGKLRDAKIRKEDMNRLVMNFLVTEGLVDAAHRFRLESGTQPEIDL 381
           S A     +T+DEW  KL +  +++ DMNRL+MN+LVTEG  +AA +FR+ESG +P +DL
Sbjct: 2   SYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDL 61

Query: 382 ATITDRMEVKK 414
            T+ +R+++++
Sbjct: 62  ETLDERIKIRE 72

>YDED_SCHPO (Q10446) Hypothetical protein C12B10.13 in chromosome I|
          Length = 240

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +1

Query: 235 DEWEGKLRDAKIRKEDMNRLVMNFLVTEGLVDAAHRFRLESGTQPEIDLATITDRMEV 408
           ++WE + +   I   D+N L++++LV +G  +AA  F  E+          + +R+E+
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEI 77

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 142  LPSTFPSSRRRGAVSSCPAPS-MATSKKVVTRDEWEGKLRDAKIRKEDMNRLVMNFLVTE 318
            LP T+PS+    A    P PS M T  +  +  E E +LRD +IRK   N  ++    TE
Sbjct: 854  LPITYPSAEEDVAFHEDPVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLPVAQTE 913

>RS3_SYMTH (Q67JU9) 30S ribosomal protein S3|
          Length = 267

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 195 RALHGDLEEGGDARRVGGEAAGRQDPQGGHEPPRDE 302
           +A  GD  E G+ R  GG   GR   QGG    R+E
Sbjct: 210 KAAAGDRRERGERRERGGRRGGRGRGQGGQRMSREE 245

>BZR1_ARATH (Q8S307) BRASSINAZOLE-RESISTANT 1 protein (BIN2 SUBSTRATE 2|
           protein)
          Length = 336

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
 Frame = +1

Query: 127 LTRASLPSTFPSSRRRGAVSSCPAPSMATSKKVVTRDEWEGKLRDA-KIRKEDMNRLVMN 303
           L    +PS+ PS R   +    P  S  TSK       WE   + +  I K+ M      
Sbjct: 156 LRNGGIPSSLPSLRISNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMAIAKQSMASFNYP 215

Query: 304 FLVTEGLVDAAHRFRLES-GTQPEID 378
           F          HR +  +  T PE D
Sbjct: 216 FYAVSAPASPTHRHQFHTPATIPECD 241

>MX1_HUMAN (P20591) Interferon-induced GTP-binding protein Mx1|
           (Interferon-regulated resistance GTP-binding protein
           MxA) (Interferon-induced protein p78) (IFI-78K)
          Length = 661

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
 Frame = +1

Query: 166 RRRGAVSSCPAPSMATSKKVVTRDEWEGK---------LRDAKIRKEDMNRLVMNFLVTE 318
           R  G V+ CP   +   KK+V  D+W GK         + DA   ++++N+   N +  E
Sbjct: 96  RGSGIVTRCPL--VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK-AQNAIAGE 152

Query: 319 GLVDAAHRFRLESGTQPEIDLATI 390
           G+  +     LE  ++   DL  I
Sbjct: 153 GMGISHELITLEISSRDVPDLTLI 176

>OPGG1_SHEON (Q8EF79) Glucans biosynthesis protein G 1 precursor|
          Length = 544

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 280 DMNRLVMNFLVTEGLVDAAHRFRLESGTQPEIDL-ATITDRMEVKK 414
           D N +V++ L+    V  A+RF +  G   +ID+ AT+  R+E+ K
Sbjct: 247 DSNLIVVHALLDSPSVAGAYRFSVRPGDNTQIDVEATLFPRVELSK 292

>CG22_YEAST (P24869) G2/mitotic-specific cyclin-2|
          Length = 491

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +1

Query: 184 SSCPAPSMATSKKVVTRDEWEGKL--RDAKIRKEDMN---RLVMNFLVTEGLVDAAHR 342
           S C A +M  S+K++ + +W+G L        KE++     ++M++LV+  + D  HR
Sbjct: 401 SLCAAAAMFMSRKMLGKGKWDGNLIHYSGGYTKEELAPVCHMIMDYLVSPIVHDEFHR 458

>RNR2_LACLA (Q02146) Ribonuclease R 2 (EC 3.1.-.-) (RNase R 2) (VacB protein|
           homolog 2)
          Length = 665

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 229 TRDEWEGKLRDAKIRKEDMNRLVMNFLVTEGLVDAAHRFRLESGTQPEIDLATIT 393
           T+DEW+ +L +      DM       +VTE ++DA  +    S    E+   TIT
Sbjct: 536 TKDEWKERLPEIASHSSDMEH---RAVVTERIIDAMKKAEYMSERIGEVYTGTIT 587

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of polyhomeotic|
            3) (Early development regulatory protein 3)
          Length = 983

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 142  LPSTFPSSRRRGAVSSCPAPS-MATSKKVVTRDEWEGKLRDAKIRKEDMNRLVMNFLVTE 318
            LP T+PS+    A      PS M T  +  +  E E +LRD +IRK   N  ++    TE
Sbjct: 856  LPITYPSAEEDLASHEDSVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLPVAQTE 915

>SYW_SCHPO (Q09692) Putative tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 395

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
 Frame = +1

Query: 205 MATSKKVVTRDEWEGKLRDAKIRKEDMNRLVMNFLVTEGLVDAAHRFRLESGTQPEI--- 375
           M+  +++VT  + +G + D + +  D  RL++ F   +   +   RF   +G +P +   
Sbjct: 1   MSVEEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLR 60

Query: 376 --------DLATITDRMEVKK 414
                   D   I DR E KK
Sbjct: 61  RGAFFSHRDFDMILDRYEQKK 81

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 156  PLFPSSRRSQLLPRALHGDLEEGGDARRVGGEAAGRQD 269
            PL P    +Q L          G DARR+GG+A G +D
Sbjct: 2222 PLGPRHETAQQLEVLEQQSTSLGQDARRLGGQAVGTRD 2259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,858,960
Number of Sequences: 219361
Number of extensions: 602265
Number of successful extensions: 2397
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2393
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)