ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 696 0.0
2gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 680 0.0
3dbj|AK070766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
4dbj|AK060384.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
5gb|AY106046.1| Zea mays PCO129667 mRNA sequence 232 7e-58
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 198 1e-47
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
8gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare str... 198 1e-47
9ref|NM_183796.1| Oryza sativa (japonica cultivar-group), predic... 48 0.023
10gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 48 0.023
11gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 48 0.023
12emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 48 0.023
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
14dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
15dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
16gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 48 0.023
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
18dbj|AK071924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
19dbj|AK071885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.091
21emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa... 46 0.091
22ref|XM_525381.1| PREDICTED: Pan troglodytes similar to Protein C... 44 0.36
23ref|XM_474182.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
24ref|NM_017896.2| Homo sapiens chromosome 20 open reading frame 1... 44 0.36
25gb|BC032120.2| Homo sapiens chromosome 20 open reading frame 11,... 44 0.36
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.36
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
28dbj|AK000609.1| Homo sapiens cDNA FLJ20602 fis, clone KAT07189 44 0.36
29emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4,... 44 0.36
30gb|AY658866.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.4
31gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
32gb|AE004723.1| Pseudomonas aeruginosa PAO1, section 284 of 529 o... 42 1.4
33gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.4
34gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.6
35ref|NM_195141.1| Oryza sativa (japonica cultivar-group) unknown ... 40 5.6
36gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, com... 40 5.6
37gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
38gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
39ref|XM_590926.2| PREDICTED: Bos taurus similar to collaborates/c... 40 5.6
40gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.6
41gb|AC103968.11| Homo sapiens chromosome 15, clone RP11-719C20, c... 40 5.6
42emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 40 5.6
43emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 40 5.6
44emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 40 5.6
45gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, c... 40 5.6
46dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
47dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49gb|AC133645.5| Mus musculus BAC clone RP23-73O10 from chromosome... 40 5.6
50dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.6
51dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.6
52dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
53dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
54dbj|AB074880.1| Chlamydomonas reinhardtii PTB1 mRNA for putative... 40 5.6
55emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.6
56gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
57gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome ... 40 5.6 
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score =  696 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Minus

                                                                          
Query: 1      taccaacctaacccagcccaggacggttccacgctccaccgccgcctgcccttgctccgc 60
              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 114333 taccaacctaacctagcccaggacggttccacgctccaccgccgcctgcccttgccccgc 114274

                                                                          
Query: 61     cgccgcgccgtacctcaccgccgacgccccctcccgcccacaccccacgcccccaaacac 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114273 cgccgcgccgtacctcaccgccgacgccccctcccgcccacaccccacgcccccaaacac 114214

                                                                          
Query: 121    ctccgcctcacgcgcgcgtcgttgccctcgacgttcccctcttcccgtcgtcgcggcgca 180
              |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 114213 ctccgcctcacgcgcgcgtcgttgccctcgccgttcccctcttcccgtcgtcgcggcgca 114154

                                                                          
Query: 181    gtcagctcctgccccgcgccctccatggcgacctcgaagaaggtggtgacgcgcgacgag 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114153 gtcagctcctgccccgcgccctccatggcgacctcgaagaaggtggtgacgcgcgacgag 114094

                                                                          
Query: 241    tgggaggggaagctgcgggacgccaagatccgcaaggaggacatgaaccgcctcgtgatg 300
              |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114093 tgggaggggaggctgcgggacgccaagatccgcaaggaggacatgaaccgcctcgtgatg 114034

                                                                          
Query: 301    aacttcctcgtcaccgagggcctcgtcgacgccgcccaccgcttccgcctcgagtccggc 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114033 aacttcctcgtcaccgagggcctcgtcgacgccgcccaccgcttccgcctcgagtccggc 113974

                     
Query: 361    acccaac 367
              |||||||
Sbjct: 113973 acccaac 113967



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                
Query: 368    cggagatcgacctggcgaccatcaccgaccggatggaggtgaagaaggcg 417
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113853 cggagatcgacctggcgaccatcaccgaccggatggaggtgaagaaggcg 113804
to top
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score =  680 bits (343), Expect = 0.0
 Identities = 361/367 (98%)
 Strand = Plus / Minus

                                                                          
Query: 1      taccaacctaacccagcccaggacggttccacgctccaccgccgcctgcccttgctccgc 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 157963 taccaacctaacccagcccaggacggttccacgctccaccgccgcctgcccttgccccgc 157904

                                                                          
Query: 61     cgccgcgccgtacctcaccgccgacgccccctcccgcccacaccccacgcccccaaacac 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157903 cgccgcgccgtacctcaccgccgacgccccctcccgcccacaccccacgcccccaaacac 157844

                                                                          
Query: 121    ctccgcctcacgcgcgcgtcgttgccctcgacgttcccctcttcccgtcgtcgcggcgca 180
              |||||||| |||||||||| |||||||||| |||| |||||| |||||||||||||||||
Sbjct: 157843 ctccgcctaacgcgcgcgttgttgccctcgccgtttccctctccccgtcgtcgcggcgca 157784

                                                                          
Query: 181    gtcagctcctgccccgcgccctccatggcgacctcgaagaaggtggtgacgcgcgacgag 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157783 gtcagctcctgccccgcgccctccatggcgacctcgaagaaggtggtgacgcgcgacgag 157724

                                                                          
Query: 241    tgggaggggaagctgcgggacgccaagatccgcaaggaggacatgaaccgcctcgtgatg 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157723 tgggaggggaagctgcgggacgccaagatccgcaaggaggacatgaaccgcctcgtgatg 157664

                                                                          
Query: 301    aacttcctcgtcaccgagggcctcgtcgacgccgcccaccgcttccgcctcgagtccggc 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157663 aacttcctcgtcaccgagggcctcgtcgacgccgcccaccgcttccgcctcgagtccggc 157604

                     
Query: 361    acccaac 367
              |||||||
Sbjct: 157603 acccaac 157597



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                
Query: 368    cggagatcgacctggcgaccatcaccgaccggatggaggtgaagaaggcg 417
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157483 cggagatcgacctggcgaccatcaccgaccggatggaggtgaagaaggcg 157434
to top
>dbj|AK070766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073F07, full
           insert sequence
          Length = 1214

 Score =  248 bits (125), Expect = 1e-62
 Identities = 191/213 (89%)
 Strand = Plus / Plus

                                                                       
Query: 200 cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
           ||||||||||| |||| |||||| |||||||||| |||||||||||| ||||||| || |
Sbjct: 280 cctccatggcgtcctccaagaagctggtgacgcgtgacgagtgggagcggaagctccgcg 339

                                                                       
Query: 260 acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 340 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 399

                                                                       
Query: 320 gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaaccggagatcgacc 379
           || |||||||||| ||  ||   |||||| |||||||||||||||||||||| || ||||
Sbjct: 400 gcttcgtcgacgctgcggacaagttccgcgtcgagtccggcacccaaccggatattgacc 459

                                            
Query: 380 tggcgaccatcaccgaccggatggaggtgaaga 412
           |||| |||||||| || ||||||||||||||||
Sbjct: 460 tggccaccatcacggatcggatggaggtgaaga 492
to top
>dbj|AK060384.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F04, full
           insert sequence
          Length = 1167

 Score =  248 bits (125), Expect = 1e-62
 Identities = 191/213 (89%)
 Strand = Plus / Plus

                                                                       
Query: 200 cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
           ||||||||||| |||| |||||| |||||||||| |||||||||||| ||||||| || |
Sbjct: 229 cctccatggcgtcctccaagaagctggtgacgcgtgacgagtgggagcggaagctccgcg 288

                                                                       
Query: 260 acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 348

                                                                       
Query: 320 gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaaccggagatcgacc 379
           || |||||||||| ||  ||   |||||| |||||||||||||||||||||| || ||||
Sbjct: 349 gcttcgtcgacgctgcggacaagttccgcgtcgagtccggcacccaaccggatattgacc 408

                                            
Query: 380 tggcgaccatcaccgaccggatggaggtgaaga 412
           |||| |||||||| || ||||||||||||||||
Sbjct: 409 tggccaccatcacggatcggatggaggtgaaga 441
to top
>gb|AY106046.1| Zea mays PCO129667 mRNA sequence
          Length = 1277

 Score =  232 bits (117), Expect = 7e-58
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                       
Query: 200 cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
           ||||||||||| ||||||||||||| ||||| || ||||||||||||  |||||| || |
Sbjct: 286 cctccatggcgtcctcgaagaaggttgtgacccgtgacgagtgggagctgaagctccgcg 345

                                                                       
Query: 260 acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 346 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 405

                                                                       
Query: 320 gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaaccggagatcgacc 379
           || |||||||||||||| ||   || ||| |||||||||||||||| |||||||| ||||
Sbjct: 406 gcttcgtcgacgccgccgacaagtttcgcatcgagtccggcacccagccggagattgacc 465

                                            
Query: 380 tggcgaccatcaccgaccggatggaggtgaaga 412
           | ||||||||||| || || |||||||| ||||
Sbjct: 466 tagcgaccatcactgatcgaatggaggttaaga 498
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Plus

                                                                           
Query: 200     cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
               ||||||||||| |||| |||||| |||||||||| |||||||||||| ||||||| || |
Sbjct: 7102442 cctccatggcgtcctccaagaagctggtgacgcgtgacgagtgggagcggaagctccgcg 7102501

                                                                           
Query: 260     acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
               ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7102502 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 7102561

                                                               
Query: 320     gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaac 367
               || |||||||||| ||  ||   |||||| ||||||||||||||||||
Sbjct: 7102562 gcttcgtcgacgctgcggacaagttccgcgtcgagtccggcacccaac 7102609



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 376     gacctggcgaccatcaccgaccggatggaggtgaaga 412
               |||||||| |||||||| || ||||||||||||||||
Sbjct: 7102726 gacctggccaccatcacggatcggatggaggtgaaga 7102762



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 51       cttgctccgccgccgcgccg 70
                ||||||||||||||||||||
Sbjct: 35809553 cttgctccgccgccgcgccg 35809534
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Plus

                                                                           
Query: 200     cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
               ||||||||||| |||| |||||| |||||||||| |||||||||||| ||||||| || |
Sbjct: 7100337 cctccatggcgtcctccaagaagctggtgacgcgtgacgagtgggagcggaagctccgcg 7100396

                                                                           
Query: 260     acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
               ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7100397 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 7100456

                                                               
Query: 320     gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaac 367
               || |||||||||| ||  ||   |||||| ||||||||||||||||||
Sbjct: 7100457 gcttcgtcgacgctgcggacaagttccgcgtcgagtccggcacccaac 7100504



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 376     gacctggcgaccatcaccgaccggatggaggtgaaga 412
               |||||||| |||||||| || ||||||||||||||||
Sbjct: 7100621 gacctggccaccatcacggatcggatggaggtgaaga 7100657



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 51       cttgctccgccgccgcgccg 70
                ||||||||||||||||||||
Sbjct: 35899683 cttgctccgccgccgcgccg 35899664
to top
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049C20, from chromosome 3, complete sequence
          Length = 136098

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Minus

                                                                         
Query: 200   cctccatggcgacctcgaagaaggtggtgacgcgcgacgagtgggaggggaagctgcggg 259
             ||||||||||| |||| |||||| |||||||||| |||||||||||| ||||||| || |
Sbjct: 91896 cctccatggcgtcctccaagaagctggtgacgcgtgacgagtgggagcggaagctccgcg 91837

                                                                         
Query: 260   acgccaagatccgcaaggaggacatgaaccgcctcgtgatgaacttcctcgtcaccgagg 319
             ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 91836 acgtcaagatccgcaaggaggacatgaaccgcctcgtcatgaacttcctcgtcaccgagg 91777

                                                             
Query: 320   gcctcgtcgacgccgcccaccgcttccgcctcgagtccggcacccaac 367
             || |||||||||| ||  ||   |||||| ||||||||||||||||||
Sbjct: 91776 gcttcgtcgacgctgcggacaagttccgcgtcgagtccggcacccaac 91729



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 376   gacctggcgaccatcaccgaccggatggaggtgaaga 412
             |||||||| |||||||| || ||||||||||||||||
Sbjct: 91612 gacctggccaccatcacggatcggatggaggtgaaga 91576
to top
>ref|NM_183796.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 131 cgcgcgcgtcgttgccctcgacgt 154
           ||||||||||||||||||||||||
Sbjct: 468 cgcgcgcgtcgttgccctcgacgt 445
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 308    tcgtcaccgagggcctcgtcgacg 331
              ||||||||||||||||||||||||
Sbjct: 473809 tcgtcaccgagggcctcgtcgacg 473832
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 308     tcgtcaccgagggcctcgtcgacg 331
               ||||||||||||||||||||||||
Sbjct: 3317313 tcgtcaccgagggcctcgtcgacg 3317336
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 308     tcgtcaccgagggcctcgtcgacg 331
               ||||||||||||||||||||||||
Sbjct: 3048597 tcgtcaccgagggcctcgtcgacg 3048620
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 131      cgcgcgcgtcgttgccctcgacgt 154
                ||||||||||||||||||||||||
Sbjct: 12476705 cgcgcgcgtcgttgccctcgacgt 12476682



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 131      cgcgcgcgtcgttgccctcgacgt 154
                ||||||||||||||||||||||||
Sbjct: 12357176 cgcgcgcgtcgttgccctcgacgt 12357199
to top
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1135C02
          Length = 152306

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 131   cgcgcgcgtcgttgccctcgacgt 154
             ||||||||||||||||||||||||
Sbjct: 62320 cgcgcgcgtcgttgccctcgacgt 62297
to top
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0011P19
          Length = 150811

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 131   cgcgcgcgtcgttgccctcgacgt 154
             ||||||||||||||||||||||||
Sbjct: 42821 cgcgcgcgtcgttgccctcgacgt 42844
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 308     tcgtcaccgagggcctcgtcgacg 331
               ||||||||||||||||||||||||
Sbjct: 1828504 tcgtcaccgagggcctcgtcgacg 1828481
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 320    gcctcgtcgacgccgcccaccgc 342
              |||||||||||||||||||||||
Sbjct: 656480 gcctcgtcgacgccgcccaccgc 656458



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 34       ctccaccgccgcctgcccttgctccgccgccgcgcc 69
                |||| ||||||||| ||| ||| |||||||||||||
Sbjct: 28170460 ctcctccgccgcctccccatgcgccgccgccgcgcc 28170425
to top
>dbj|AK071924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069M21, full
            insert sequence
          Length = 4334

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 320  gcctcgtcgacgccgcccaccgc 342
            |||||||||||||||||||||||
Sbjct: 2919 gcctcgtcgacgccgcccaccgc 2941
to top
>dbj|AK071885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048E13, full
            insert sequence
          Length = 3141

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 320  gcctcgtcgacgccgcccaccgc 342
            |||||||||||||||||||||||
Sbjct: 1867 gcctcgtcgacgccgcccaccgc 1889
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 320    gcctcgtcgacgccgcccaccgc 342
              |||||||||||||||||||||||
Sbjct: 656480 gcctcgtcgacgccgcccaccgc 656458



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 34       ctccaccgccgcctgcccttgctccgccgccgcgcc 69
                |||| ||||||||| ||| ||| |||||||||||||
Sbjct: 28155338 ctcctccgccgcctccccatgcgccgccgccgcgcc 28155303
to top
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 181322

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 320   gcctcgtcgacgccgcccaccgc 342
             |||||||||||||||||||||||
Sbjct: 86492 gcctcgtcgacgccgcccaccgc 86514
to top
>ref|XM_525381.1| PREDICTED: Pan troglodytes similar to Protein C20orf11 (LOC469997),
           mRNA
          Length = 687

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 280 gacatgaaccgcctcgtgatgaacttcctcgtcaccgagggc 321
           ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct: 82  gacatgaaccgcctcatcatgaactacctggtcacagagggc 123
to top
>ref|XM_474182.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 45  cctgcccttgctccgccgccgcgccg 70
           ||||||| ||||||||||||||||||
Sbjct: 190 cctgcccctgctccgccgccgcgccg 165
to top
>ref|NM_017896.2| Homo sapiens chromosome 20 open reading frame 11 (C20orf11), mRNA
          Length = 4440

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 280 gacatgaaccgcctcgtgatgaacttcctcgtcaccgagggc 321
           ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct: 259 gacatgaaccgcctcatcatgaactacctggtcacagagggc 300
to top
>gb|BC032120.2| Homo sapiens chromosome 20 open reading frame 11, mRNA (cDNA clone
           MGC:29516 IMAGE:4137113), complete cds
          Length = 1571

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 280 gacatgaaccgcctcgtgatgaacttcctcgtcaccgagggc 321
           ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct: 229 gacatgaaccgcctcatcatgaactacctggtcacagagggc 270
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 372    gatcgacctggcgaccatcaccgacc 397
              |||||||||| |||||||||||||||
Sbjct: 200964 gatcgacctgccgaccatcaccgacc 200989
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 45       cctgcccttgctccgccgccgcgccg 70
                ||||||| ||||||||||||||||||
Sbjct: 33561932 cctgcccctgctccgccgccgcgccg 33561957
to top
>dbj|AK000609.1| Homo sapiens cDNA FLJ20602 fis, clone KAT07189
          Length = 1545

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 280 gacatgaaccgcctcgtgatgaacttcctcgtcaccgagggc 321
           ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct: 195 gacatgaaccgcctcatcatgaactacctggtcacagagggc 236
to top
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13,
              complete sequence
          Length = 152264

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 45     cctgcccttgctccgccgccgcgccg 70
              ||||||| ||||||||||||||||||
Sbjct: 138221 cctgcccctgctccgccgccgcgccg 138246
to top
>gb|AY658866.1| Synthetic construct Peudomonas aeruginosa clone FLH042448.01F
           PA2975 gene, partial cds
          Length = 957

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 134 gcgcgtcgttgccctcgacgttcccctct 162
           ||||||| ||||||||||||||| |||||
Sbjct: 658 gcgcgtccttgccctcgacgttcacctct 630
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 376     gacctggcgaccatcaccgac 396
               |||||||||||||||||||||
Sbjct: 3500809 gacctggcgaccatcaccgac 3500829
to top
>gb|AE004723.1| Pseudomonas aeruginosa PAO1, section 284 of 529 of the complete
            genome
          Length = 13710

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 134  gcgcgtcgttgccctcgacgttcccctct 162
            ||||||| ||||||||||||||| |||||
Sbjct: 4542 gcgcgtccttgccctcgacgttcacctct 4570
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    ggaggggaagctgcgggacgc 263
              |||||||||||||||||||||
Sbjct: 458104 ggaggggaagctgcgggacgc 458124



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     cccaccgcttccgcctcgag 354
               ||||||||||||||||||||
Sbjct: 2856332 cccaccgcttccgcctcgag 2856313
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     cgccaagatccgcaaggagg 280
               ||||||||||||||||||||
Sbjct: 1996690 cgccaagatccgcaaggagg 1996709
to top
>ref|NM_195141.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0051J07.13), mRNA
          Length = 198

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  cttgctccgccgccgcgccg 70
           ||||||||||||||||||||
Sbjct: 163 cttgctccgccgccgcgccg 144
to top
>gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, complete sequence
          Length = 190857

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ccccctcccgcccacacccc 106
              ||||||||||||||||||||
Sbjct: 160413 ccccctcccgcccacacccc 160394
to top
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0062G19, complete sequence
          Length = 92392

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cttgctccgccgccgcgccg 70
             ||||||||||||||||||||
Sbjct: 63492 cttgctccgccgccgcgccg 63473
to top
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16
              map C481S, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 34     ctccaccgccgcctgcccttgctccgccgccgcgcc 69
              |||| ||||||||| ||| ||| |||||||||||||
Sbjct: 129015 ctcctccgccgcctccccatgcgccgccgccgcgcc 128980
to top
>ref|XM_590926.2| PREDICTED: Bos taurus similar to collaborates/cooperates with ARF
           (alternate reading frame) protein (LOC513265), mRNA
          Length = 3008

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  ccgcctgcccttgctccgcc 61
           ||||||||||||||||||||
Sbjct: 166 ccgcctgcccttgctccgcc 185
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 306    cctcgtcaccgagggcctcgtcga 329
              |||||||||||||||| |||||||
Sbjct: 838262 cctcgtcaccgagggcgtcgtcga 838239
to top
>gb|AC103968.11| Homo sapiens chromosome 15, clone RP11-719C20, complete sequence
          Length = 162470

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ccacaccccacgcccccaaa 117
             ||||||||||||||||||||
Sbjct: 90030 ccacaccccacgcccccaaa 90049
to top
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 272    gcaaggaggacatgaaccgcctcg 295
              |||||||||||||||| |||||||
Sbjct: 186140 gcaaggaggacatgaagcgcctcg 186117



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    gcaaggaggacatgaaccgcctcg 295
              |||||||||||||||| |||||||
Sbjct: 164515 gcaaggaggacatgaagcgcctcg 164538
to top
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     cgccgccgcgccgtacctcaccgc 81
              ||||||||||||||||||| ||||
Sbjct: 221578 cgccgccgcgccgtacctcgccgc 221601
to top
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   acttcctcgtcaccgagggc 321
             ||||||||||||||||||||
Sbjct: 10095 acttcctcgtcaccgagggc 10114
to top
>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence
          Length = 148301

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cttgctccgccgccgcgccg 70
             ||||||||||||||||||||
Sbjct: 88661 cttgctccgccgccgcgccg 88642
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      cttgctccgccgccgcgccg 70
               ||||||||||||||||||||
Sbjct: 4941740 cttgctccgccgccgcgccg 4941721
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 158      cctcttcccgtcgtcgcggc 177
                ||||||||||||||||||||
Sbjct: 25739806 cctcttcccgtcgtcgcggc 25739787
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 87       ccccctcccgcccacacccc 106
                ||||||||||||||||||||
Sbjct: 21914540 ccccctcccgcccacacccc 21914521
to top
>gb|AC133645.5| Mus musculus BAC clone RP23-73O10 from chromosome 5, complete sequence
          Length = 207846

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ccccctcccgcccacacccc 106
              ||||||||||||||||||||
Sbjct: 202147 ccccctcccgcccacacccc 202166
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 322     ctcgtcgacgccgcccaccgcttc 345
               ||||||| ||||||||||||||||
Sbjct: 1657396 ctcgtcggcgccgcccaccgcttc 1657373
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     tcgtcaccgagggcctcgtc 327
               ||||||||||||||||||||
Sbjct: 3465269 tcgtcaccgagggcctcgtc 3465250
to top
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0416A11
          Length = 171519

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cctcttcccgtcgtcgcggc 177
             ||||||||||||||||||||
Sbjct: 22010 cctcttcccgtcgtcgcggc 21991
to top
>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689H05
          Length = 135803

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ccccctcccgcccacacccc 106
             ||||||||||||||||||||
Sbjct: 97825 ccccctcccgcccacacccc 97806
to top
>dbj|AB074880.1| Chlamydomonas reinhardtii PTB1 mRNA for putative Pi-transporter
            homologue B1, complete cds
          Length = 6032

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 48   gcccttgctccgccgccgcgccgt 71
            |||| |||||||||||||||||||
Sbjct: 3319 gcccatgctccgccgccgcgccgt 3296
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 311    tcaccgagggcctcgtcgacgccg 334
              ||||||| ||||||||||||||||
Sbjct: 648691 tcaccgacggcctcgtcgacgccg 648714
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      cttgctccgccgccgcgccg 70
               ||||||||||||||||||||
Sbjct: 4942527 cttgctccgccgccgcgccg 4942508
to top
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence
          Length = 241077

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     cccacaccccacgcccccaa 116
              ||||||||||||||||||||
Sbjct: 105023 cccacaccccacgcccccaa 105042


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,072,846
Number of Sequences: 3902068
Number of extensions: 3072846
Number of successful extensions: 72006
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69445
Number of HSP's gapped (non-prelim): 2556
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top