ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009263.1| Triticum aestivum clone wlk4.pk0023.a11:fis, full... 52 5e-04
2gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 6.8
3gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 6.8
4ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a p... 38 6.8
5gb|BC052234.1| Homo sapiens wingless-type MMTV integration site ... 38 6.8
6ref|NM_025216.2| Homo sapiens wingless-type MMTV integration sit... 38 6.8
7gb|BC040026.1| Homo sapiens wingless-type MMTV integration site ... 38 6.8
8emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4,... 38 6.8
9dbj|AK024363.1| Homo sapiens cDNA FLJ14301 fis, clone PLACE10118... 38 6.8
10gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequ... 38 6.8
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.8
12gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complet... 38 6.8
13gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cd... 38 6.8
14dbj|AK111111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.8
15gb|AY107381.1| Zea mays PCO061330 mRNA sequence 38 6.8
16gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 6.8

>gb|BT009263.1| Triticum aestivum clone wlk4.pk0023.a11:fis, full insert mRNA
           sequence
          Length = 766

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 70  ccgccgcgatgcagcgcaggctcccggcgctcct 103
           |||||| |||||||||| ||||||||||||||||
Sbjct: 47  ccgccgagatgcagcgccggctcccggcgctcct 80



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 71      cgccgcgatgcagcgcagg 89
               |||||||||||||||||||
Sbjct: 1901726 cgccgcgatgcagcgcagg 1901708



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 71      cgccgcgatgcagcgcagg 89
               |||||||||||||||||||
Sbjct: 2366377 cgccgcgatgcagcgcagg 2366395



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>ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a protein precursor
            (LOC459952), mRNA
          Length = 3822

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 82   agcgcaggctcccggcgct 100
            |||||||||||||||||||
Sbjct: 1875 agcgcaggctcccggcgct 1893



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>gb|BC052234.1| Homo sapiens wingless-type MMTV integration site family, member
           10A, mRNA (cDNA clone MGC:59695 IMAGE:5442628), complete
           cds
          Length = 2405

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 90  agcgcaggctcccggcgct 108



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>ref|NM_025216.2| Homo sapiens wingless-type MMTV integration site family, member 10A
           (WNT10A), mRNA
          Length = 2375

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 79  agcgcaggctcccggcgct 97



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>gb|BC040026.1| Homo sapiens wingless-type MMTV integration site family, member
           10A, mRNA (cDNA clone IMAGE:5189795)
          Length = 1562

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 49  agcgcaggctcccggcgct 67



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>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06,
             complete sequence
          Length = 129608

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    cgaccgccgccgcgatgca 82
             |||||||||||||||||||
Sbjct: 51621 cgaccgccgccgcgatgca 51639



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>dbj|AK024363.1| Homo sapiens cDNA FLJ14301 fis, clone PLACE1011896, highly similar
           to Mus musculus Wnt10a mRNA
          Length = 2375

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  agcgcaggctcccggcgct 100
           |||||||||||||||||||
Sbjct: 79  agcgcaggctcccggcgct 97



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>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence
          Length = 184338

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    cgccgcgatgcagcgcagg 89
             |||||||||||||||||||
Sbjct: 99252 cgccgcgatgcagcgcagg 99234



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cgaccgccgccgcgatgca 82
               |||||||||||||||||||
Sbjct: 4661488 cgaccgccgccgcgatgca 4661506



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>gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complete sequence
          Length = 55590

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    agcgcaggctcccggcgct 100
             |||||||||||||||||||
Sbjct: 13839 agcgcaggctcccggcgct 13857



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>gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cds; and WNT10A (WNT10A) gene,
             complete cds, complete sequence
          Length = 36654

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    agcgcaggctcccggcgct 100
             |||||||||||||||||||
Sbjct: 14280 agcgcaggctcccggcgct 14298



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>dbj|AK111111.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A11, full
           insert sequence
          Length = 513

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 64  cgaccgccgccgcgatgca 82
           |||||||||||||||||||
Sbjct: 149 cgaccgccgccgcgatgca 131



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>gb|AY107381.1| Zea mays PCO061330 mRNA sequence
          Length = 1531

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 77  gatgcagcgcaggctcccggcgctcct 103
           |||||||||  ||||||||||||||||
Sbjct: 94  gatgcagcggtggctcccggcgctcct 120



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 69      gccgccgcgatgcagcgca 87
               |||||||||||||||||||
Sbjct: 2634200 gccgccgcgatgcagcgca 2634182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,656
Number of Sequences: 3902068
Number of extensions: 269656
Number of successful extensions: 19632
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19349
Number of HSP's gapped (non-prelim): 283
length of query: 142
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 121
effective length of database: 17,151,101,840
effective search space: 2075283322640
effective search space used: 2075283322640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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