ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper tran... 135 1e-28
2gb|BT018458.1| Zea mays clone EL01N0412H10.d mRNA sequence 46 0.097
3ref|NM_200909.1| Danio rerio cAMP responsive element binding pro... 44 0.38
4ref|XM_685928.1| PREDICTED: Danio rerio similar to CAMP responsi... 44 0.38
5gb|BC044436.1| Danio rerio cAMP responsive element binding prote... 44 0.38
6emb|AL929559.12| Zebrafish DNA sequence from clone CH211-106G5 i... 44 0.38
7gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
8emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, ... 42 1.5
9gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-30... 42 1.5
10gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete s... 42 1.5
11gb|AC010545.9| Homo sapiens chromosome 16 clone RP11-449H11, com... 42 1.5
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
14emb|AL935317.10| Zebrafish DNA sequence from clone CH211-199I10,... 42 1.5
15dbj|D49538.1|ASNDHGO Aspergillus terreus DHGO gene for dihydroge... 42 1.5
16gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete... 40 6.0
17ref|XM_526403.1| PREDICTED: Pan troglodytes similar to MGC81892 ... 40 6.0
18gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
19ref|XM_370514.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 6.0
20gb|BC025788.1| Homo sapiens NK2 transcription factor related, lo... 40 6.0
21gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 40 6.0
22ref|NM_145285.1| Homo sapiens NK2 transcription factor related, ... 40 6.0
23gb|AC110175.14| Mus musculus chromosome 12, clone RP23-124B21, c... 40 6.0
24gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, co... 40 6.0
25gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosom... 40 6.0
26emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chro... 40 6.0
27emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
28gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 40 6.0
29gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell ... 40 6.0
30ref|NM_139645.2| Drosophila melanogaster CG15021-RA (CG15021), mRNA 40 6.0
31gb|AY071124.1| Drosophila melanogaster RE17165 full length cDNA 40 6.0
32gb|AC078909.7| Homo sapiens chromosome 15, clone RP11-128A17, co... 40 6.0
33ref|XM_941813.1| PREDICTED: Homo sapiens similar to Cytochrome P... 40 6.0
34gb|AY852250.1| Meleagris gallopavo syndecan-3 mRNA, complete cds 40 6.0
35gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence 40 6.0
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
40emb|AL663009.3|OSJN00210 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
41dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.0
44dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.0
45dbj|AP005523.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
47emb|BX663503.10| Zebrafish DNA sequence from clone CH211-136A13 ... 40 6.0
48gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15... 40 6.0
49gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.0
50gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, com... 40 6.0
51gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.0
52gb|AC068644.15| Homo sapiens 3 BAC RP11-315J22 (Roswell Park Can... 40 6.0 
>gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper transcription factor
           TaHDZipI-1 mRNA, complete cds
          Length = 963

 Score =  135 bits (68), Expect = 1e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 346 gccatgaagcggcccggcggcggcaacccctcccccctccaccagatggccagtcccagt 405
           ||||||||||||||||||||||| ||||||||| ||| || |||||||||||| |||| |
Sbjct: 1   gccatgaagcggcccggcggcggaaacccctcctcccacctccagatggccagccccaat 60

                                           
Query: 406 gatatggactacggcgtggtcgggatggaggc 437
           ||||||||||||||||||||||||||||||||
Sbjct: 61  gatatggactacggcgtggtcgggatggaggc 92
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>gb|BT018458.1| Zea mays clone EL01N0412H10.d mRNA sequence
          Length = 1209

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 415 tacggcgtggtcgggatggaggc 437
           |||||||||||||||||||||||
Sbjct: 355 tacggcgtggtcgggatggaggc 377
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>ref|NM_200909.1| Danio rerio cAMP responsive element binding protein 1 (creb1), mRNA
          Length = 1968

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 30  agaaatcagagcaggactccactcca 55
           ||||||||||| ||||||||||||||
Sbjct: 512 agaaatcagaggaggactccactcca 537
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>ref|XM_685928.1| PREDICTED: Danio rerio similar to CAMP responsive element binding
           protein 1 (LOC573207), partial mRNA
          Length = 792

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 30  agaaatcagagcaggactccactcca 55
           ||||||||||| ||||||||||||||
Sbjct: 526 agaaatcagaggaggactccactcca 551
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>gb|BC044436.1| Danio rerio cAMP responsive element binding protein 1, mRNA (cDNA
           clone MGC:55598 IMAGE:2643545), complete cds
          Length = 1968

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 30  agaaatcagagcaggactccactcca 55
           ||||||||||| ||||||||||||||
Sbjct: 512 agaaatcagaggaggactccactcca 537
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>emb|AL929559.12| Zebrafish DNA sequence from clone CH211-106G5 in linkage group 1,
             complete sequence
          Length = 163933

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 30    agaaatcagagcaggactccactcca 55
             ||||||||||| ||||||||||||||
Sbjct: 97452 agaaatcagaggaggactccactcca 97477
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>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0099J16, complete sequence
          Length = 133198

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 297   aggtggtggtggctgtggtgc 317
             |||||||||||||||||||||
Sbjct: 28678 aggtggtggtggctgtggtgc 28658
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>emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, complete sequence
          Length = 174414

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 262   actctctctgctcctcttctc 282
             |||||||||||||||||||||
Sbjct: 98671 actctctctgctcctcttctc 98691
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>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete
            sequence
          Length = 213462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  gggaggacggggagggaccag 235
            |||||||||||||||||||||
Sbjct: 5227 gggaggacggggagggaccag 5207
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>gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete sequence
          Length = 180673

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 215    gggaggacggggagggaccag 235
              |||||||||||||||||||||
Sbjct: 127015 gggaggacggggagggaccag 126995
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>gb|AC010545.9| Homo sapiens chromosome 16 clone RP11-449H11, complete sequence
          Length = 170517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    tggggggaaacagaaaggaaa 21
            |||||||||||||||||||||
Sbjct: 9606 tggggggaaacagaaaggaaa 9586
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      aggtggtggtggctgtggtgc 317
                |||||||||||||||||||||
Sbjct: 25976288 aggtggtggtggctgtggtgc 25976308
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      aggtggtggtggctgtggtgc 317
                |||||||||||||||||||||
Sbjct: 26294986 aggtggtggtggctgtggtgc 26295006
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>emb|AL935317.10| Zebrafish DNA sequence from clone CH211-199I10, complete sequence
          Length = 200098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   actctctctgctcctcttctc 282
             |||||||||||||||||||||
Sbjct: 75680 actctctctgctcctcttctc 75660
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>dbj|D49538.1|ASNDHGO Aspergillus terreus DHGO gene for dihydrogeodin oxidase, complete cds
            (exon1-7)
          Length = 3041

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 421  gtggtcgggatggaggctgatgggg 445
            |||||||||| ||||||||||||||
Sbjct: 1330 gtggtcgggaaggaggctgatgggg 1354
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>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence
          Length = 157286

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   tggtggctgtggtgccggtg 322
             ||||||||||||||||||||
Sbjct: 80844 tggtggctgtggtgccggtg 80825
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>ref|XM_526403.1| PREDICTED: Pan troglodytes similar to MGC81892 protein (LOC471019),
           mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 301 ggtggtggctgtggtgccggtgcc 324
           |||||||||||||||| |||||||
Sbjct: 603 ggtggtggctgtggtgtcggtgcc 580
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>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13,
              complete sequence
          Length = 143966

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    aggtggtggtggctgtggtg 316
              ||||||||||||||||||||
Sbjct: 128109 aggtggtggtggctgtggtg 128090
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>ref|XM_370514.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG07011.4) partial mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 ggtggtggtggctgtggtgc 317
           ||||||||||||||||||||
Sbjct: 68  ggtggtggtggctgtggtgc 49
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>gb|BC025788.1| Homo sapiens NK2 transcription factor related, locus 3 (Drosophila),
            mRNA (cDNA clone MGC:34784 IMAGE:5229146), complete cds
          Length = 2083

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gaaacagaaaggaaacccgg 26
            ||||||||||||||||||||
Sbjct: 1860 gaaacagaaaggaaacccgg 1841
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>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    cccctcccccctccaccaga 391
              ||||||||||||||||||||
Sbjct: 154302 cccctcccccctccaccaga 154321
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>ref|NM_145285.1| Homo sapiens NK2 transcription factor related, locus 3 (Drosophila)
            (NKX2-3), mRNA
          Length = 2083

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gaaacagaaaggaaacccgg 26
            ||||||||||||||||||||
Sbjct: 1860 gaaacagaaaggaaacccgg 1841
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>gb|AC110175.14| Mus musculus chromosome 12, clone RP23-124B21, complete sequence
          Length = 242870

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gaaaagaaatcagagcagga 45
             ||||||||||||||||||||
Sbjct: 14818 gaaaagaaatcagagcagga 14799
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>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence
          Length = 224351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    cccctcccccctccaccaga 391
              ||||||||||||||||||||
Sbjct: 206682 cccctcccccctccaccaga 206701
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>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete sequence
          Length = 155342

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    cccctcccccctccaccaga 391
              ||||||||||||||||||||
Sbjct: 149746 cccctcccccctccaccaga 149727
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>emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chromosome 10 Contains the
            NKX2-3 gene for NK2 transcription factor related, locus 3
            (Drosophila), the gene for putative mitochondrial solute
            carrier (MRS3/4) and five CpG islands, complete sequence
          Length = 123160

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gaaacagaaaggaaacccgg 26
            ||||||||||||||||||||
Sbjct: 8026 gaaacagaaaggaaacccgg 8007
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>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13,
             complete sequence
          Length = 163429

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 354   gcggcccggcggcggcaacccctcccccctcc 385
             ||||||||||||||||  ||||||||||||||
Sbjct: 28085 gcggcccggcggcggc-tcccctcccccctcc 28115
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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 219    ggacggggagggaccagcagtgga 242
              |||| |||||||||||||||||||
Sbjct: 181783 ggactgggagggaccagcagtgga 181806
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>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172401

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   tggtggctgtggtgccggtg 322
             ||||||||||||||||||||
Sbjct: 12379 tggtggctgtggtgccggtg 12360
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>ref|NM_139645.2| Drosophila melanogaster CG15021-RA (CG15021), mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 tggtggctgtggtgccggtg 322
           ||||||||||||||||||||
Sbjct: 708 tggtggctgtggtgccggtg 689
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>gb|AY071124.1| Drosophila melanogaster RE17165 full length cDNA
          Length = 1549

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 tggtggctgtggtgccggtg 322
           ||||||||||||||||||||
Sbjct: 706 tggtggctgtggtgccggtg 687
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>gb|AC078909.7| Homo sapiens chromosome 15, clone RP11-128A17, complete sequence
          Length = 170257

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    gaaggtggtggtggctgtgg 314
              ||||||||||||||||||||
Sbjct: 111903 gaaggtggtggtggctgtgg 111922
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>ref|XM_941813.1| PREDICTED: Homo sapiens similar to Cytochrome P450 2F2 (CYPIIF2)
           (Naphthalene dehydrogenase) (Naphthalene hydroxylase)
           (P450-NAH-2) (LOC652383), mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 301 ggtggtggctgtggtgccggtgcc 324
           |||||||||||||||| |||||||
Sbjct: 840 ggtggtggctgtggtgtcggtgcc 817
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>gb|AY852250.1| Meleagris gallopavo syndecan-3 mRNA, complete cds
          Length = 1232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 ggtggtggtggctgtggtgc 317
           ||||||||||||||||||||
Sbjct: 464 ggtggtggtggctgtggtgc 445
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>gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence
          Length = 151321

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gaaggtggtggtggctgtgg 314
             ||||||||||||||||||||
Sbjct: 13585 gaaggtggtggtggctgtgg 13604
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                                
Query: 354      gcggcccggcggcggcaacccctcccccctcc 385
                ||||||||||||||||  ||||||||||||||
Sbjct: 10528748 gcggcccggcggcggc-tcccctcccccctcc 10528778
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 354      gcggcccggcggcggcaacccctcccccctcc 385
                ||||||||||||||||  ||||||||||||||
Sbjct: 16390707 gcggcccggcggcggc-tcccctcccccctcc 16390677
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 297     aggtggtggtggctgtggtg 316
               ||||||||||||||||||||
Sbjct: 6426370 aggtggtggtggctgtggtg 6426351
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 354      gcggcccggcggcggcaacccctcccccctcc 385
                ||||||||||||||||  ||||||||||||||
Sbjct: 17911451 gcggcccggcggcggc-tcccctcccccctcc 17911421



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 354      gcggcccggcggcggcaacccctcccccctcc 385
                ||||||||||||||||  ||||||||||||||
Sbjct: 17911344 gcggcccggcggcggc-tcccctcccccctcc 17911314
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>emb|AL663009.3|OSJN00210 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0052B05,
              complete sequence
          Length = 144687

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 354    gcggcccggcggcggcaacccctcccccctcc 385
              ||||||||||||||||  ||||||||||||||
Sbjct: 144070 gcggcccggcggcggc-tcccctcccccctcc 144100
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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 354   gcggcccggcggcggcaacccctcccccctcc 385
             ||||||||||||||||  ||||||||||||||
Sbjct: 31286 gcggcccggcggcggc-tcccctcccccctcc 31256



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 354   gcggcccggcggcggcaacccctcccccctcc 385
             ||||||||||||||||  ||||||||||||||
Sbjct: 31179 gcggcccggcggcggc-tcccctcccccctcc 31149
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>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0455H03
          Length = 175947

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 354    gcggcccggcggcggcaacccctcccccctcc 385
              ||||||||||||||||  ||||||||||||||
Sbjct: 158573 gcggcccggcggcggc-tcccctcccccctcc 158543



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 354    gcggcccggcggcggcaacccctcccccctcc 385
              ||||||||||||||||  ||||||||||||||
Sbjct: 158466 gcggcccggcggcggc-tcccctcccccctcc 158436
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ggaggacggggagggaccag 235
              ||||||||||||||||||||
Sbjct: 836680 ggaggacggggagggaccag 836661
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     tcgtcatggatcgaggcgtg 211
               ||||||||||||||||||||
Sbjct: 2993818 tcgtcatggatcgaggcgtg 2993799
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>dbj|AP005523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0488B06
          Length = 154764

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 354  gcggcccggcggcggcaacccctcccccctcc 385
            ||||||||||||||||  ||||||||||||||
Sbjct: 1363 gcggcccggcggcggc-tcccctcccccctcc 1333
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>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0426E02
          Length = 166985

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 354   gcggcccggcggcggcaacccctcccccctcc 385
             ||||||||||||||||  ||||||||||||||
Sbjct: 96559 gcggcccggcggcggc-tcccctcccccctcc 96529
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>emb|BX663503.10| Zebrafish DNA sequence from clone CH211-136A13 in linkage group 18,
             complete sequence
          Length = 176960

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   atcggggaaggtggtggtgg 308
             ||||||||||||||||||||
Sbjct: 31575 atcggggaaggtggtggtgg 31556
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>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete
              sequence
          Length = 315988

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    tggtggctgtggtgccggtg 322
              ||||||||||||||||||||
Sbjct: 128799 tggtggctgtggtgccggtg 128780
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     tggatcgaggcgtggacggg 217
               ||||||||||||||||||||
Sbjct: 2469581 tggatcgaggcgtggacggg 2469562
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>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence
          Length = 231380

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    cccctcccccctccaccaga 391
              ||||||||||||||||||||
Sbjct: 159780 cccctcccccctccaccaga 159761
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ggaggacggggagggaccag 235
              ||||||||||||||||||||
Sbjct: 506068 ggaggacggggagggaccag 506049
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>gb|AC068644.15| Homo sapiens 3 BAC RP11-315J22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178688

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 301   ggtggtggctgtggtgccggtgcc 324
             |||||||||||||||| |||||||
Sbjct: 44905 ggtggtggctgtggtgtcggtgcc 44928


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,923,206
Number of Sequences: 3902068
Number of extensions: 3923206
Number of successful extensions: 96933
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 96362
Number of HSP's gapped (non-prelim): 573
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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