Clone Information

BLAST Search Result

Clone Name	bast46e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC096689.5\| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom...	186	4e-44
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	186	4e-44
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	4e-44
4	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.34
5	dbj\|AP005619.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.34
6	gb\|AC105966.11\| Mus musculus chromosome 3, clone RP23-403H2, com...	40	5.4
7	ref\|XM_514543.1\| PREDICTED: Pan troglodytes similar to insulinom...	40	5.4
8	ref\|XM_524151.1\| PREDICTED: Pan troglodytes similar to hypotheti...	40	5.4
9	ref\|XM_474470.1\| Oryza sativa (japonica cultivar-group), predic...	40	5.4
10	ref\|NM_195055.1\| Oryza sativa (japonica cultivar-group) putative...	40	5.4
11	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	40	5.4
12	ref\|NM_001002982.1\| Canis familiaris CD40 molecule, TNF receptor...	40	5.4
13	gb\|AC147656.3\| Pan troglodytes BAC clone CH251-505H4 from Y, com...	40	5.4
14	gb\|AE008954.1\| Agrobacterium tumefaciens str. C58 AT plasmid sec...	40	5.4
15	gb\|AE007901.1\| Agrobacterium tumefaciens str. C58 plasmid AT, se...	40	5.4
16	gb\|AC147660.2\| Pan troglodytes BAC clone CH251-389M10 from Y, co...	40	5.4
17	gb\|AC161183.10\| Mus musculus chromosome 3, clone RP23-172P6, com...	40	5.4
18	gb\|AC146190.3\| Pan troglodytes BAC clone CH251-509K23 from Y, co...	40	5.4
19	ref\|XM_838447.1\| Leishmania major strain Friedlin hypothetical p...	40	5.4
20	gb\|AC146268.2\| Pan troglodytes BAC clone CH251-57I2 from Y, comp...	40	5.4
21	gb\|BC056795.1\| Danio rerio cDNA clone IMAGE:5611921, partial cds	40	5.4
22	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	5.4
23	emb\|AL358216.33\| Human DNA sequence from clone RP11-809C18 on ch...	40	5.4
24	gb\|AY333789.1\| Canis familiaris CD40 (CD40) mRNA, complete cds	40	5.4
25	ref\|XM_964452.1\| PREDICTED: Tribolium castaneum hypothetical pro...	40	5.4
26	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	40	5.4
27	emb\|CR749794.1\| Homo sapiens mRNA; cDNA DKFZp686P0243 (from clon...	40	5.4
28	emb\|BX004811.6\| Zebrafish DNA sequence from clone BUSM1-118J2 in...	40	5.4
29	emb\|AL939123.1\|SCO939123 Streptomyces coelicolor A3(2) complete ...	40	5.4
30	emb\|AL606656.3\|OSJN00099 Oryza sativa genomic DNA, chromosome 4,...	40	5.4
31	emb\|AL591985.1\|RME591985 Sinorhizobium meliloti 1021 complete pSymB	40	5.4
32	gb\|AC008737.11\| Homo sapiens chromosome 19 clone CTD-2538G9, com...	40	5.4
33	dbj\|BS000662.3\| Pan troglodytes chromosome Y clone: PTB-143L19, ...	40	5.4
34	dbj\|BS000579.1\| Pan troglodytes chromosome Y clone:PTBY-008N05, ...	40	5.4
35	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	5.4
36	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	5.4
37	gb\|AC164571.3\| Pan troglodytes BAC clone CH251-967O8 from chromo...	40	5.4
38	gb\|AC090488.3\| Genomic sequence for Oryza sativa, Nipponbare str...	40	5.4
39	ref\|XM_695151.1\| PREDICTED: Danio rerio similar to ankyrin repea...	40	5.4
40	gb\|AC146250.5\| Pan troglodytes BAC clone CH251-148B21 from chrom...	40	5.4
41	dbj\|AK016297.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	5.4
42	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	5.4
43	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
44	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
45	ref\|NM_001007525.1\| Homo sapiens hypothetical protein LOC284434 ...	40	5.4
46	gb\|AC006987.2\|AC006987 Homo sapiens BAC clone RP11-160K17 from Y...	40	5.4
47	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.4
48	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.4
49	gb\|AC148940.5\| Pan troglodytes BAC clone CH251-96J19 from chromo...	40	5.4
50	emb\|BX648940.1\|HSM809091 Homo sapiens mRNA; cDNA DKFZp686I0844 (...	40	5.4
51	emb\|AL732342.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	5.4
52	gb\|AC007786.1\|AC007786 Homo sapiens chromosome 19, BAC 41855 (CI...	40	5.4
53	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.4

>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Plus

                                                                         
Query: 277   cgaggaagtacaccgggatggtggaggactgctgctgcgactacgagacggtggacgcca 336
             ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 76007 cgaggaagtacacggggatggtggaggattgctgctgcgactacgagacggtggacgcca 76066

                                                                         
Query: 337   tcaacgaggaggtgctcaaccccatcctgcaggacctcgtcgctctgcccttcttcaggt 396
             ||||||||||||||||  |||| ||||||||||| |||||| || |||||||||||||||
Sbjct: 76067 tcaacgaggaggtgctgcacccgatcctgcaggagctcgtcactttgcccttcttcaggt 76126

                   
Query: 397   acttca 402
             ||||||
Sbjct: 76127 acttca 76132



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 186   ctcgtggcgctcctcgccgtggccgtgagctcccgcagcttccc 229
             |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 75796 ctcgtggcgctcctcgccgtcgccgtcagctcgcgcagcttccc 75839

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Minus

                                                                            
Query: 277      cgaggaagtacaccgggatggtggaggactgctgctgcgactacgagacggtggacgcca 336
                ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29773454 cgaggaagtacacggggatggtggaggattgctgctgcgactacgagacggtggacgcca 29773395

                                                                            
Query: 337      tcaacgaggaggtgctcaaccccatcctgcaggacctcgtcgctctgcccttcttcaggt 396
                ||||||||||||||||  |||| ||||||||||| |||||| || |||||||||||||||
Sbjct: 29773394 tcaacgaggaggtgctgcacccgatcctgcaggagctcgtcactttgcccttcttcaggt 29773335

                      
Query: 397      acttca 402
                ||||||
Sbjct: 29773334 acttca 29773329



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 186      ctcgtggcgctcctcgccgtggccgtgagctcccgcagcttccc 229
                |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 29773665 ctcgtggcgctcctcgccgtcgccgtcagctcgcgcagcttccc 29773622

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Minus

                                                                            
Query: 277      cgaggaagtacaccgggatggtggaggactgctgctgcgactacgagacggtggacgcca 336
                ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29864876 cgaggaagtacacggggatggtggaggattgctgctgcgactacgagacggtggacgcca 29864817

                                                                            
Query: 337      tcaacgaggaggtgctcaaccccatcctgcaggacctcgtcgctctgcccttcttcaggt 396
                ||||||||||||||||  |||| ||||||||||| |||||| || |||||||||||||||
Sbjct: 29864816 tcaacgaggaggtgctgcacccgatcctgcaggagctcgtcactttgcccttcttcaggt 29864757

                      
Query: 397      acttca 402
                ||||||
Sbjct: 29864756 acttca 29864751



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 186      ctcgtggcgctcctcgccgtggccgtgagctcccgcagcttccc 229
                |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 29865087 ctcgtggcgctcctcgccgtcgccgtcagctcgcgcagcttccc 29865044

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 256     gaggctgcggctgccccggcgc 277
               ||||||||||||||||||||||
Sbjct: 8187940 gaggctgcggctgccccggcgc 8187919

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>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0624H09
          Length = 158719

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 256   gaggctgcggctgccccggcgc 277
             ||||||||||||||||||||||
Sbjct: 80303 gaggctgcggctgccccggcgc 80282

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>gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, complete sequence
          Length = 201376

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gccagcgcccccggccgcgg 24
             ||||||||||||||||||||
Sbjct: 13160 gccagcgcccccggccgcgg 13179

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>ref|XM_514543.1| PREDICTED: Pan troglodytes similar to insulinoma-associated 1
           (LOC458127), mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   ccgccagcgcccccggccgcggac 26
           ||||||||||||||||||| ||||
Sbjct: 859 ccgccagcgcccccggccgaggac 882

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>ref|XM_524151.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC468764), mRNA
          Length = 654

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 catcctgcaggacctcgtcg 378
           ||||||||||||||||||||
Sbjct: 157 catcctgcaggacctcgtcg 138

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>ref|XM_474470.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5637

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 250 gcggcggaggctgcggctgccccggcgc 277
           ||||||| |||||||||||| |||||||
Sbjct: 13  gcggcggcggctgcggctgcgccggcgc 40

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>ref|NM_195055.1| Oryza sativa (japonica cultivar-group) putative arm
           repeat-containing protein (OSJNBb0081F12.16), mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 211 tgagctcccgcagcttcccctccatttcgtcc 242
           ||||||||||||||| | ||||||| ||||||
Sbjct: 125 tgagctcccgcagctccgcctccatctcgtcc 94

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 182     cctcctcgtggcgctcctcgccgt 205
               ||||||||| ||||||||||||||
Sbjct: 1743718 cctcctcgtcgcgctcctcgccgt 1743695

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>ref|NM_001002982.1| Canis familiaris CD40 molecule, TNF receptor superfamily member 5
            (CD40), mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   agaaccttccaccccacccc 97
            ||||||||||||||||||||
Sbjct: 1145 agaaccttccaccccacccc 1164

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>gb|AC147656.3| Pan troglodytes BAC clone CH251-505H4 from Y, complete sequence
          Length = 238079

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     accttccaccccaccccggc 100
              ||||||||||||||||||||
Sbjct: 133914 accttccaccccaccccggc 133933

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>gb|AE008954.1| Agrobacterium tumefaciens str. C58 AT plasmid section 29 of 49 of the
            complete sequence
          Length = 9441

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  ggcggaggctgcggctgccc 271
            ||||||||||||||||||||
Sbjct: 4186 ggcggaggctgcggctgccc 4167

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>gb|AE007901.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 29 of 50 of
            the complete sequence
          Length = 9694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  ggcggaggctgcggctgccc 271
            ||||||||||||||||||||
Sbjct: 4439 ggcggaggctgcggctgccc 4420

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>gb|AC147660.2| Pan troglodytes BAC clone CH251-389M10 from Y, complete sequence
          Length = 175868

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 42048 accttccaccccaccccggc 42029

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>gb|AC161183.10| Mus musculus chromosome 3, clone RP23-172P6, complete sequence
          Length = 222012

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     gccagcgcccccggccgcgg 24
             ||||||||||||||||||||
Sbjct: 81242 gccagcgcccccggccgcgg 81223

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>gb|AC146190.3| Pan troglodytes BAC clone CH251-509K23 from Y, complete sequence
          Length = 213746

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 49570 accttccaccccaccccggc 49589

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>ref|XM_838447.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1364)
            partial mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 182  cctcctcgtggcgctcctcgccgt 205
            ||||||||| ||||||||||||||
Sbjct: 1105 cctcctcgtcgcgctcctcgccgt 1082

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>gb|AC146268.2| Pan troglodytes BAC clone CH251-57I2 from Y, complete sequence
          Length = 195737

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     accttccaccccaccccggc 100
              ||||||||||||||||||||
Sbjct: 146332 accttccaccccaccccggc 146313

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>gb|BC056795.1| Danio rerio cDNA clone IMAGE:5611921, partial cds
          Length = 3993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   cgtccagccagatctcgctc 71
            ||||||||||||||||||||
Sbjct: 2346 cgtccagccagatctcgctc 2365

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     ccggcgaatcgcgggatgtc 115
              ||||||||||||||||||||
Sbjct: 742839 ccggcgaatcgcgggatgtc 742858

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>emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on chromosome 10 Contains two
             novel genes, the gene for a novel protein (FLJ38694
             FLJ38681) and five CpG islands, complete sequence
          Length = 96891

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    cgctcccagaaccttccacc 90
             ||||||||||||||||||||
Sbjct: 21882 cgctcccagaaccttccacc 21901

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>gb|AY333789.1| Canis familiaris CD40 (CD40) mRNA, complete cds
          Length = 1425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   agaaccttccaccccacccc 97
            ||||||||||||||||||||
Sbjct: 1145 agaaccttccaccccacccc 1164

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>ref|XM_964452.1| PREDICTED: Tribolium castaneum hypothetical protein LOC658039
           (LOC658039), mRNA
          Length = 636

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 325 cggtggacgccatcaacgaggagg 348
           ||||| ||||||||||||||||||
Sbjct: 380 cggtgaacgccatcaacgaggagg 403

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 9       gcgcccccggccgcggacacggcg 32
               |||||| |||||||||||||||||
Sbjct: 1165493 gcgcccgcggccgcggacacggcg 1165470

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>emb|CR749794.1| Homo sapiens mRNA; cDNA DKFZp686P0243 (from clone DKFZp686P0243)
          Length = 7295

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  catcctgcaggacctcgtcg 378
            ||||||||||||||||||||
Sbjct: 2252 catcctgcaggacctcgtcg 2233

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>emb|BX004811.6| Zebrafish DNA sequence from clone BUSM1-118J2 in linkage group 3
             Contains two novel genes similar to zebrafish ba2 (globin
             ba2), six novel genes for alpha-globins, two novel genes
             similar to zebrafish bE1 (embryonic 1 beta-globin), the
             zebrafish bE1 gene for embryonic 1 beta-globin and a novel
             gene, complete sequence
          Length = 80760

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    cgtccagccagatctcgctc 71
             ||||||||||||||||||||
Sbjct: 79950 cgtccagccagatctcgctc 79931

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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     gccgtccagccagatctcgc 69
              ||||||||||||||||||||
Sbjct: 285423 gccgtccagccagatctcgc 285404

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>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
             complete sequence
          Length = 123272

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 250   gcggcggaggctgcggctgccccggcgc 277
             ||||||| |||||||||||| |||||||
Sbjct: 15544 gcggcggcggctgcggctgcgccggcgc 15517

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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     cgcgcggcggaggctgcggc 266
               ||||||||||||||||||||
Sbjct: 1245414 cgcgcggcggaggctgcggc 1245433

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>gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, complete sequence
          Length = 248281

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   catcctgcaggacctcgtcg 378
             ||||||||||||||||||||
Sbjct: 75024 catcctgcaggacctcgtcg 75005

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>dbj|BS000662.3| Pan troglodytes chromosome Y clone: PTB-143L19, complete sequence
          Length = 193499

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   accttccaccccaccccggc 100
            ||||||||||||||||||||
Sbjct: 4985 accttccaccccaccccggc 5004

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>dbj|BS000579.1| Pan troglodytes chromosome Y clone:PTBY-008N05, complete sequences
          Length = 104026

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 24261 accttccaccccaccccggc 24242

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     cctcgtggcgctcctcgccg 204
               ||||||||||||||||||||
Sbjct: 2793920 cctcgtggcgctcctcgccg 2793901

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 81       accttccaccccaccccggc 100
                ||||||||||||||||||||
Sbjct: 13993708 accttccaccccaccccggc 13993727



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 81       accttccaccccaccccggc 100
                ||||||||||||||||||||
Sbjct: 13713865 accttccaccccaccccggc 13713846



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 81       accttccaccccaccccggc 100
                ||||||||||||||||||||
Sbjct: 10074810 accttccaccccaccccggc 10074791



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      accttccaccccaccccggc 100
               ||||||||||||||||||||
Sbjct: 4192949 accttccaccccaccccggc 4192968

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>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete
             sequence
          Length = 225200

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 31428 accttccaccccaccccggc 31409

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>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081F12 from chromosome 10, complete sequence
          Length = 128388

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 211   tgagctcccgcagcttcccctccatttcgtcc 242
             ||||||||||||||| | ||||||| ||||||
Sbjct: 75295 tgagctcccgcagctccgcctccatctcgtcc 75264

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>ref|XM_695151.1| PREDICTED: Danio rerio similar to ankyrin repeat domain 25
            (LOC571549), mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   cgtccagccagatctcgctc 71
            ||||||||||||||||||||
Sbjct: 2115 cgtccagccagatctcgctc 2134

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>gb|AC146250.5| Pan troglodytes BAC clone CH251-148B21 from chromosome y, complete
             sequence
          Length = 175351

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 60162 accttccaccccaccccggc 60143

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>dbj|AK016297.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
          library, clone:4930577N17 product:inferred: RIKEN cDNA
          4930577N17 gene, full insert sequence
          Length = 1529

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  gccagcgcccccggccgcgg 24
          ||||||||||||||||||||
Sbjct: 17 gccagcgcccccggccgcgg 36

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     cctcgtggcgctcctcgccg 204
               ||||||||||||||||||||
Sbjct: 3288422 cctcgtggcgctcctcgccg 3288441

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 250      gcggcggaggctgcggctgccccggcgc 277
                ||||||| |||||||||||| |||||||
Sbjct: 35390741 gcggcggcggctgcggctgcgccggcgc 35390714

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 211     tgagctcccgcagcttcccctccatttcgtcc 242
               ||||||||||||||| | ||||||| ||||||
Sbjct: 4413687 tgagctcccgcagctccgcctccatctcgtcc 4413656

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>ref|NM_001007525.1| Homo sapiens hypothetical protein LOC284434 (LOC284434), mRNA
          Length = 8418

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  catcctgcaggacctcgtcg 378
            ||||||||||||||||||||
Sbjct: 2908 catcctgcaggacctcgtcg 2889

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>gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y, complete sequence
          Length = 166041

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    accttccaccccaccccggc 100
             ||||||||||||||||||||
Sbjct: 82774 accttccaccccaccccggc 82755

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 253     gcggaggctgcggctgccccggcg 276
               |||||||||||||| |||||||||
Sbjct: 3387147 gcggaggctgcggcggccccggcg 3387124

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 184     tcctcgtggcgctcctcgccgtgg 207
               ||||||| ||||||||||||||||
Sbjct: 2121033 tcctcgtcgcgctcctcgccgtgg 2121010

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>gb|AC148940.5| Pan troglodytes BAC clone CH251-96J19 from chromosome y, complete
              sequence
          Length = 182743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     accttccaccccaccccggc 100
              ||||||||||||||||||||
Sbjct: 124164 accttccaccccaccccggc 124145

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>emb|BX648940.1|HSM809091 Homo sapiens mRNA; cDNA DKFZp686I0844 (from clone DKFZp686I0844)
          Length = 8418

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  catcctgcaggacctcgtcg 378
            ||||||||||||||||||||
Sbjct: 2908 catcctgcaggacctcgtcg 2889

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>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
             sequence
          Length = 32686

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 250   gcggcggaggctgcggctgccccggcgc 277
             ||||||| |||||||||||| |||||||
Sbjct: 22485 gcggcggcggctgcggctgcgccggcgc 22458

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>gb|AC007786.1|AC007786 Homo sapiens chromosome 19, BAC 41855 (CIT-B-32o4), complete sequence
          Length = 229061

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 220   gcagcttcccctccatttcgtccctctc 247
             ||||||||||||||||| | ||||||||
Sbjct: 48681 gcagcttcccctccattccttccctctc 48654

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 211     tgagctcccgcagcttcccctccatttcgtcc 242
               ||||||||||||||| | ||||||| ||||||
Sbjct: 4414508 tgagctcccgcagctccgcctccatctcgtcc 4414477


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,437,024
Number of Sequences: 3902068
Number of extensions: 2437024
Number of successful extensions: 60364
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59462
Number of HSP's gapped (non-prelim): 902
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result