>CI038_HUMAN (Q9UI66) Protein C9orf38|
          Length = 118

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 123 LLCFIPLACSAPSWFSGVVWC 61
           L+ F+PL     SWFS ++WC
Sbjct: 83  LMRFLPLQRHTRSWFSLILWC 103

>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)|
          Length = 315

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 250 YGAGSQRPRRSL-YTTGTAWVASWLASSGG 164
           +GAG +RPR ++  TT + W  +W    GG
Sbjct: 155 WGAGRRRPRTTMKTTTRSCWKCAWSRPRGG 184

>POLB_CHPVE (Q04350) ORFB polyprotein [Contains: Papain-like protease p48 (EC|
            3.4.22.-); Putative RNA-directed RNA polymerase/Helicase
            (EC 2.7.7.48) (EC 3.6.1.-)]
          Length = 3165

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 271  RRLTWEGYGAGSQRP 227
            +R+TWE YGAGS  P
Sbjct: 1872 KRITWETYGAGSGMP 1886

>POLB_CHPVU (Q9YTU2) ORFB polyprotein [Contains: Papain-like protease p48 (EC|
            3.4.22.-); Putative RNA-directed RNA polymerase/Helicase
            (EC 2.7.7.48) (EC 3.6.1.-)]
          Length = 3164

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 271  RRLTWEGYGAGSQRP 227
            +R+TWE YGAGS  P
Sbjct: 1871 KRITWETYGAGSGMP 1885


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,554,974
Number of Sequences: 219361
Number of extensions: 525309
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)