ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46e08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence Length = 1556 Score = 236 bits (119), Expect = 5e-59 Identities = 162/175 (92%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 262 cgtcggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacg 321 ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 201 cgtcggtgccggcgatgttcgtgttcggggactccctgacggacaacgggaacaacaacg 260 Query: 322 acctcacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggc 381 || | |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 261 acatgacgtcgctggccaaggccaactacctcccctacggcatcgacttcgccggcggcc 320 Query: 382 ccactggacgcttctcc-acggctacaccatggtcgacgccatagctgagcttct 435 | || || ||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 321 caaccggccgcttctccaacggctacaccatggtcgacgagatagctgagcttct 375
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 220 bits (111), Expect = 3e-54 Identities = 148/159 (93%), Gaps = 1/159 (0%) Strand = Plus / Plus Query: 262 cgtcggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacg 321 ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 113955 cgtcggtgccggcgatgttcgtgttcggggactccctgacggacaacgggaacaacaacg 114014 Query: 322 acctcacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggc 381 || | |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 114015 acatgacgtcgctggccaaggccaactacctcccctacggcatcgacttcgccggcggcc 114074 Query: 382 ccactggacgcttctcc-acggctacaccatggtcgacg 419 | || || ||||||||| ||||||||||||||||||||| Sbjct: 114075 caaccggccgcttctccaacggctacaccatggtcgacg 114113
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 220 bits (111), Expect = 3e-54 Identities = 148/159 (93%), Gaps = 1/159 (0%) Strand = Plus / Plus Query: 262 cgtcggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacg 321 ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 20442210 cgtcggtgccggcgatgttcgtgttcggggactccctgacggacaacgggaacaacaacg 20442269 Query: 322 acctcacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggc 381 || | |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 20442270 acatgacgtcgctggccaaggccaactacctcccctacggcatcgacttcgccggcggcc 20442329 Query: 382 ccactggacgcttctcc-acggctacaccatggtcgacg 419 | || || ||||||||| ||||||||||||||||||||| Sbjct: 20442330 caaccggccgcttctccaacggctacaccatggtcgacg 20442368 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| ||| ||||||||||||||||||||| || |||||||||| Sbjct: 25484577 ttcgtgttcggggactcgctggtggacaacggcaacaacaacgatatcgtgtcgctggcc 25484518 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 |||||||||| ||||||||||||||||||||||||||| Sbjct: 25484517 cgcgccaactacccgccctacggcatcgacttcgccggcgg 25484477
>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence Length = 1302 Score = 194 bits (98), Expect = 2e-46 Identities = 141/154 (91%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 267 gtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 39 gtgccggcgatgttcgtgttcggggactcgctgacggacaacggcaacaacaacgacctg 98 Query: 327 acgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccact 386 | ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 99 aactcgctcgccaaggctaactacccgccctacggcatcgacttcgccggcggccccacc 158 Query: 387 ggacgcttctcc-acggctacaccatggtcgacg 419 || ||||||||| ||||||||||||||||||||| Sbjct: 159 ggccgcttctccaacggctacaccatggtcgacg 192
>ref|XM_507096.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498H04.26 mRNA Length = 1449 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 156 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 215 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 216 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 275 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 276 cggccgcttctgcaacggctacaccatcgtcgacg 310
>ref|XM_479754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 164 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 223 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 224 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 283 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 284 cggccgcttctgcaacggctacaccatcgtcgacg 318
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 680103 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 680162 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 680163 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 680222 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 680223 cggccgcttctgcaacggctacaccatcgtcgacg 680257 Score = 46.1 bits (23), Expect = 0.095 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||| |||||||| ||| ||||| ||||||||||||| |||| Sbjct: 28339356 ttcgtgtttggcgactcgctggtggacagcggcaacaacaactacct 28339402 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||| | |||| | |||||||||||||| ||| ||| ||||||||||||| |||| Sbjct: 21912127 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactacct 21912186
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 107481 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 107540 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 107541 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 107600 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 107601 cggccgcttctgcaacggctacaccatcgtcgacg 107635
>dbj|AK105876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B10, full insert sequence Length = 1449 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 156 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 215 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 216 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 275 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 276 cggccgcttctgcaacggctacaccatcgtcgacg 310
>dbj|AK069672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A20, full insert sequence Length = 1327 Score = 117 bits (59), Expect = 3e-23 Identities = 132/155 (85%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct: 164 ggtgccggcgctgttcgtgttcggcgactcgctgatcgacaacgggaacaacaacaacct 223 Query: 326 cacgtcgctggccaaggccaactacctgccctacggcatcgacttcgccggcgggcccac 385 ||||| | |||||||| |||||| |||||||||||||||||||||| ||| || || Sbjct: 224 ggcgtcgttcgccaaggcgaactactacccctacggcatcgacttcgccgccggcccaac 283 Query: 386 tggacgcttct-ccacggctacaccatggtcgacg 419 || ||||||| | ||||||||||||| ||||||| Sbjct: 284 cggccgcttctgcaacggctacaccatcgtcgacg 318
>ref|XM_475723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| ||| ||||||||||||||||||||| || |||||||||| Sbjct: 100 ttcgtgttcggggactcgctggtggacaacggcaacaacaacgatatcgtgtcgctggcc 159 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 |||||||||| ||||||||||||||||||||||||||| Sbjct: 160 cgcgccaactacccgccctacggcatcgacttcgccggcgg 200
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| ||| ||||||||||||||||||||| || |||||||||| Sbjct: 986 ttcgtgttcggggactcgctggtggacaacggcaacaacaacgatatcgtgtcgctggcc 927 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 |||||||||| ||||||||||||||||||||||||||| Sbjct: 926 cgcgccaactacccgccctacggcatcgacttcgccggcgg 886
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| ||| ||||||||||||||||||||| || |||||||||| Sbjct: 124938 ttcgtgttcggggactcgctggtggacaacggcaacaacaacgatatcgtgtcgctggcc 124879 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 |||||||||| ||||||||||||||||||||||||||| Sbjct: 124878 cgcgccaactacccgccctacggcatcgacttcgccggcgg 124838
>dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D08, full insert sequence Length = 1315 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| ||| ||||||||||||||||||||| || |||||||||| Sbjct: 164 ttcgtgttcggggactcgctggtggacaacggcaacaacaacgatatcgtgtcgctggcc 223 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 |||||||||| ||||||||||||||||||||||||||| Sbjct: 224 cgcgccaactacccgccctacggcatcgacttcgccggcgg 264
>ref|NM_191210.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| || ||||||||| ||||||||| || || ||||| |||| Sbjct: 94 ttcgtgttcggggactcgctcgtggacaacgggaacaacaacaacatcgcgtcgatggcg 153 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 ||||||||||| |||||||||| |||||||| ||||||| Sbjct: 154 cgggccaactacccgccctacggcgtcgacttccccggcgg 194
>ref|NM_191862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggc 362 |||||||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 121 gacaacggcaacaacaactacatcgtttcgctggcgcgcgccaactacccgccctacggc 180 Query: 363 atcgacttcgccggcgg 379 ||||||||||||||||| Sbjct: 181 atcgacttcgccggcgg 197
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| || ||||||||| ||||||||| || || ||||| |||| Sbjct: 31324883 ttcgtgttcggggactcgctcgtggacaacgggaacaacaacaacatcgcgtcgatggcg 31324942 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 ||||||||||| |||||||||| |||||||| ||||||| Sbjct: 31324943 cgggccaactacccgccctacggcgtcgacttccccggcgg 31324983 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggc 362 |||||||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 30355337 gacaacggcaacaacaactacatcgtttcgctggcgcgcgccaactacccgccctacggc 30355396 Query: 363 atcgacttcgccggcgg 379 ||||||||||||||||| Sbjct: 30355397 atcgacttcgccggcgg 30355413 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 26299818 ttcggcgactcgctgacggacaccggcaac 26299847 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 6318579 ttcggcgactcgctgacggacaccggcaac 6318608
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggc 362 |||||||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 143656 gacaacggcaacaacaactacatcgtttcgctggcgcgcgccaactacccgccctacggc 143715 Query: 363 atcgacttcgccggcgg 379 ||||||||||||||||| Sbjct: 143716 atcgacttcgccggcgg 143732
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggcc 338 ||||||||||| ||||| || ||||||||| ||||||||| || || ||||| |||| Sbjct: 79166 ttcgtgttcggggactcgctcgtggacaacgggaacaacaacaacatcgcgtcgatggcg 79225 Query: 339 aaggccaactacctgccctacggcatcgacttcgccggcgg 379 ||||||||||| |||||||||| |||||||| ||||||| Sbjct: 79226 cgggccaactacccgccctacggcgtcgacttccccggcgg 79266
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggc 362 |||||||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 41064 gacaacggcaacaacaactacatcgtttcgctggcgcgcgccaactacccgccctacggc 41123 Query: 363 atcgacttcgccggcgg 379 ||||||||||||||||| Sbjct: 41124 atcgacttcgccggcgg 41140
>dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full insert sequence Length = 2149 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggc 362 |||||||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 217 gacaacggcaacaacaactacatcgtttcgctggcgcgcgccaactacccgccctacggc 276 Query: 363 atcgacttcgccggcgg 379 ||||||||||||||||| Sbjct: 277 atcgacttcgccggcgg 293
>gb|AY106609.1| Zea mays PCO140750 mRNA sequence Length = 634 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 201 ttcgtgttcggggactccctcgtggacaacggcaacaacaactacctca 249
>ref|NM_196893.1| Oryza sativa (japonica cultivar-group) putative early nodulin gene (Enod) related protein (OSJNBa0071K18.9), mRNA Length = 1384 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 ||||||||||||||||| ||| |||||||||||| |||||| ||||| Sbjct: 120 ttcgtgttcggcgactcgctggtggacaacggcaataacaactacctc 167
>ref|XM_473495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 265 cggtgccggccatgttcgtgttcggcgactcc 296 ||||||||||||||||||||||||| |||||| Sbjct: 86 cggtgccggccatgttcgtgttcggggactcc 117
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 ||||||||||||||||| ||| |||||||||||| |||||| ||||| Sbjct: 103353 ttcgtgttcggcgactcgctggtggacaacggcaataacaactacctc 103306
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 265 cggtgccggccatgttcgtgttcggcgactcc 296 ||||||||||||||||||||||||| |||||| Sbjct: 105515 cggtgccggccatgttcgtgttcggggactcc 105484
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 265 cggtgccggccatgttcgtgttcggcgactcc 296 ||||||||||||||||||||||||| |||||| Sbjct: 28098290 cggtgccggccatgttcgtgttcggggactcc 28098259 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| ||||| || ||||||||||||||||||| |||||| Sbjct: 25342402 ttcgtgttcggggactcgctcgtggacaacggcaacaacaactacctca 25342450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggacaacggcaacaacaacg 321 |||||||||||||||||||| Sbjct: 20518146 ggacaacggcaacaacaacg 20518165
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 ||||||||||||||||| ||| |||||||||||| |||||| ||||| Sbjct: 16556889 ttcgtgttcggcgactcgctggtggacaacggcaataacaactacctc 16556936
>dbj|AK108201.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C12, full insert sequence Length = 1375 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 ||||||||||||||||| ||| |||||||||||| |||||| ||||| Sbjct: 132 ttcgtgttcggcgactcgctggtggacaacggcaataacaactacctc 179
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctc 326 ||||||||||||||||| ||| |||||||||||| |||||| ||||| Sbjct: 16565130 ttcgtgttcggcgactcgctggtggacaacggcaataacaactacctc 16565177
>ref|XM_466762.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1344 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 190 ttcgtgttcggcgactccctcgtcgacaacggcaacaacaactacct 236
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 24535956 ttcgtgttcggcgactccctcgtcgacaacggcaacaacaactacct 24536002 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 34987586 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 34987538
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 50057 ttcgtgttcggcgactccctcgtcgacaacggcaacaacaactacct 50103
>dbj|AK108108.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B09, full insert sequence Length = 1344 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 190 ttcgtgttcggcgactccctcgtcgacaacggcaacaacaactacct 236
>ref|XM_468393.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1517 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>ref|XM_507548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA Length = 1525 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>ref|XM_507046.2| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA Length = 1558 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>ref|XM_473111.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1107 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| ||||| || ||||||||||||||||||| |||||| Sbjct: 97 ttcgtgttcggggactcgctcgtggacaacggcaacaacaactacctca 145
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| ||||| || ||||||||||||||||||| |||||| Sbjct: 126341 ttcgtgttcggggactcgctcgtggacaacggcaacaacaactacctca 126389
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| ||||| || ||||||||||||||||||| |||||| Sbjct: 68961 ttcgtgttcggggactcgctcgtggacaacggcaacaacaactacctca 69009
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 47927 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 47879
>dbj|AK121383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127I10, full insert sequence Length = 1929 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||||||||| ||||| || ||||||||||||||||||| |||||| Sbjct: 599 ttcgtgttcggggactcgctcgtggacaacggcaacaacaactacctca 647
>dbj|AK106084.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B01, full insert sequence Length = 1525 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>dbj|AK099251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154O11, full insert sequence Length = 1517 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>dbj|AK060243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G01, full insert sequence Length = 1558 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacctca 327 ||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 169 ttcgtcttcggcgactccctcgtcgacaacggcaacaacaactacctca 217
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 308 cggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggcatcga 367 ||||||||||||| || || | |||||| ||||||||||| |||| |||||||||| Sbjct: 28171029 cggcaacaacaactacatcccctcgctgtccaaggccaacatgacgcccaacggcatcga 28170970 Query: 368 cttcgccg 375 |||||||| Sbjct: 28170969 cttcgccg 28170962
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 308 cggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggcatcga 367 ||||||||||||| || || | |||||| ||||||||||| |||| |||||||||| Sbjct: 26574 cggcaacaacaactacatcccctcgctgtccaaggccaacatgacgcccaacggcatcga 26515 Query: 368 cttcgccg 375 |||||||| Sbjct: 26514 cttcgccg 26507
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 308 cggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggcatcga 367 ||||||||||||| || || | |||||| ||||||||||| |||| |||||||||| Sbjct: 154325 cggcaacaacaactacatcccctcgctgtccaaggccaacatgacgcccaacggcatcga 154266 Query: 368 cttcgccg 375 |||||||| Sbjct: 154265 cttcgccg 154258
>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence Length = 1666 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Plus Query: 308 cggcaacaacaacgacctcacgtcgctggccaaggccaactacctgccctacggcatcga 367 ||||||||||||| || || | |||||| ||||||||||| |||| |||||||||| Sbjct: 291 cggcaacaacaactacatcccctcgctgtccaaggccaacatgacgcccaacggcatcga 350 Query: 368 cttcgccg 375 |||||||| Sbjct: 351 cttcgccg 358
>ref|XM_483839.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1523 Score = 46.1 bits (23), Expect = 0.095 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||| |||||||| ||| ||||| ||||||||||||| |||| Sbjct: 222 ttcgtgtttggcgactcgctggtggacagcggcaacaacaactacct 268
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactcc 296 ||||||||| |||| |||||||||||||||| Sbjct: 208 ggtgccggcgatgtacgtgttcggcgactcc 238
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 46.1 bits (23), Expect = 0.095 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||| |||||||| ||| ||||| ||||||||||||| |||| Sbjct: 68162 ttcgtgtttggcgactcgctggtggacagcggcaacaacaactacct 68208
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 46.1 bits (23), Expect = 0.095 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||| |||||||| ||| ||||| ||||||||||||| |||| Sbjct: 131171 ttcgtgtttggcgactcgctggtggacagcggcaacaacaactacct 131217
>dbj|AK106778.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H02, full insert sequence Length = 1523 Score = 46.1 bits (23), Expect = 0.095 Identities = 41/47 (87%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 |||||||| |||||||| ||| ||||| ||||||||||||| |||| Sbjct: 222 ttcgtgtttggcgactcgctggtggacagcggcaacaacaactacct 268
>ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa8142 predicted mRNA Length = 1125 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 127 ttcggcgactcgctgacggacaccggcaac 156
>ref|NM_192375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 984 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 127 ttcggcgactcgctgacggacaccggcaac 156
>emb|BX936293.11| Platypus DNA sequence from clone XX-516O5, complete sequence Length = 178175 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 ggtgctcctcctggtgctcctc 137 |||||||||||||||||||||| Sbjct: 15785 ggtgctcctcctggtgctcctc 15806 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 ggtgctcctcctggtgctcctc 137 |||||||||||||||||||||| Sbjct: 15773 ggtgctcctcctggtgctcctc 15794 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 gtgctcctcctggtgctcctc 137 ||||||||||||||||||||| Sbjct: 15762 gtgctcctcctggtgctcctc 15782 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 gtgctcctcctggtgctcctcgcg 140 ||||||||||| |||||||||||| Sbjct: 16068 gtgctcctcctcgtgctcctcgcg 16091
>gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full insert mRNA sequence Length = 1342 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||||||||| |||| ||||||| Sbjct: 207 ttcggcgactccctgaccgacaccggcaac 236
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Minus Query: 285 ttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggccaaggcc 344 ||||||||||| ||| ||||| ||||||||||||| || || | ||||| ||| Sbjct: 10070980 ttcggcgactcgctggtggacagcggcaacaacaacaacatcctgagcctggcgcgcgcc 10070921 Query: 345 aactacctgccctacggcatcgacttcgccggcg 378 ||||||| ||||||||| ||||||||| |||||| Sbjct: 10070920 aactaccagccctacgggatcgacttctccggcg 10070887 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 23332599 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 23332547
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 273 gccatgttcgtgttcggcgactccctgacggaca 306 ||||||||||||||||| ||||| ||| |||||| Sbjct: 2897958 gccatgttcgtgttcggggactcgctggcggaca 2897991 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 277 tgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||||||| ||| ||| ||||||||||||||||||| |||| Sbjct: 21100140 tgttcgtgttcgggagctcgctggtggacaacggcaacaacaaccacct 21100188
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 89645 ttcggcgactcgctgacggacaccggcaac 89674
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 112499 ttcggcgactcgctgacggacaccggcaac 112528
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085L11 Length = 148142 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 273 gccatgttcgtgttcggcgactccctgacggaca 306 ||||||||||||||||| ||||| ||| |||||| Sbjct: 141439 gccatgttcgtgttcggggactcgctggcggaca 141472
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 273 gccatgttcgtgttcggcgactccctgacggaca 306 ||||||||||||||||| ||||| ||| |||||| Sbjct: 58104 gccatgttcgtgttcggggactcgctggcggaca 58137
>dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F10, full insert sequence Length = 1452 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 190 ttcggcgactcgctgacggacaccggcaac 219
>dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E01, full insert sequence Length = 1520 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 187 ttcggcgactcgctgacggacaccggcaac 216
>dbj|AK111325.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D09, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 323 ttcggcgactcgctgacggacaccggcaac 352
>dbj|AK107226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D10, full insert sequence Length = 1439 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 273 gccatgttcgtgttcggcgactccctgacggaca 306 ||||||||||||||||| ||||| ||| |||||| Sbjct: 180 gccatgttcgtgttcggggactcgctggcggaca 213
>dbj|AK063071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H02, full insert sequence Length = 987 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggccaaggcc 344 ||||||||||| ||| ||||| ||||||||||||| || || | ||||| ||| Sbjct: 176 ttcggcgactcgctggtggacagcggcaacaacaacaacatcctgagcctggcgcgcgcc 235 Query: 345 aactacctgccctacggcatcgacttcgccggcg 378 ||||||| ||||||||| ||||||||| |||||| Sbjct: 236 aactaccagccctacgggatcgacttctccggcg 269
>dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full insert sequence Length = 1577 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 190 ttcggcgactcgctgacggacaccggcaac 219
>dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B07, full insert sequence Length = 1691 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaac 314 ||||||||||| |||||||||| ||||||| Sbjct: 450 ttcggcgactcgctgacggacaccggcaac 479
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Minus Query: 285 ttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggccaaggcc 344 ||||||||||| ||| ||||| ||||||||||||| || || | ||||| ||| Sbjct: 10070865 ttcggcgactcgctggtggacagcggcaacaacaacaacatcctgagcctggcgcgcgcc 10070806 Query: 345 aactacctgccctacggcatcgacttcgccggcg 378 ||||||| ||||||||| ||||||||| |||||| Sbjct: 10070805 aactaccagccctacgggatcgacttctccggcg 10070772 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 23260790 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 23260738
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 44.1 bits (22), Expect = 0.38 Identities = 76/94 (80%) Strand = Plus / Plus Query: 285 ttcggcgactccctgacggacaacggcaacaacaacgacctcacgtcgctggccaaggcc 344 ||||||||||| ||| ||||| ||||||||||||| || || | ||||| ||| Sbjct: 91641 ttcggcgactcgctggtggacagcggcaacaacaacaacatcctgagcctggcgcgcgcc 91700 Query: 345 aactacctgccctacggcatcgacttcgccggcg 378 ||||||| ||||||||| ||||||||| |||||| Sbjct: 91701 aactaccagccctacgggatcgacttctccggcg 91734
>ref|XM_450256.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1183 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 280 tcgtgttcggcgactccctgacggacaacggcaacaacaac 320 ||||||||||||||||| | |||||| |||||||||||| Sbjct: 150 tcgtgttcggcgactccacggcggacacgggcaacaacaac 190
>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173558 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgac 323 ||||||||||||||||||||| Sbjct: 135459 gacaacggcaacaacaacgac 135479
>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173386 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgac 323 ||||||||||||||||||||| Sbjct: 40388 gacaacggcaacaacaacgac 40408
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 cggcatcgacttcgccggcgg 379 ||||||||||||||||||||| Sbjct: 2694933 cggcatcgacttcgccggcgg 2694913
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 280 tcgtgttcggcgactccctgacggacaacggcaacaacaac 320 ||||||||||||||||| | |||||| |||||||||||| Sbjct: 3531712 tcgtgttcggcgactccacggcggacacgggcaacaacaac 3531672
>dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1451_A02 Length = 135861 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 280 tcgtgttcggcgactccctgacggacaacggcaacaacaac 320 ||||||||||||||||| | |||||| |||||||||||| Sbjct: 84600 tcgtgttcggcgactccacggcggacacgggcaacaacaac 84560
>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E12 Length = 139750 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 277 tgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||||||||| ||| ||| ||||||||||||||||||| |||| Sbjct: 97141 tgttcgtgttcgggagctcgctggtggacaacggcaacaacaaccacct 97189
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 280 tcgtgttcggcgactccctgacggacaacggcaacaacaac 320 ||||||||||||||||| | |||||| |||||||||||| Sbjct: 17487 tcgtgttcggcgactccacggcggacacgggcaacaacaac 17447
>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev Length = 416 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 279 ttcgtgttcggcgactccctgacggacaacggcaacaacaacgac 323 ||||||||||| ||||| ||| |||||| || |||||||||||| Sbjct: 365 ttcgtgttcggggactcgctggtggacaatgggaacaacaacgac 409
>dbj|AK107173.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G06, full insert sequence Length = 1183 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 280 tcgtgttcggcgactccctgacggacaacggcaacaacaac 320 ||||||||||||||||| | |||||| |||||||||||| Sbjct: 150 tcgtgttcggcgactccacggcggacacgggcaacaacaac 190
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full insert sequence Length = 1582 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 155 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 207
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence Length = 1741 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 155 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 207
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 acgtcgctggccaaggccaac 347 ||||||||||||||||||||| Sbjct: 546766 acgtcgctggccaaggccaac 546786
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full insert sequence Length = 1637 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 229 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 281
>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete sequence Length = 315944 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 gacaacggcaacaacaacgac 323 ||||||||||||||||||||| Sbjct: 20488 gacaacggcaacaacaacgac 20508
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 265 cggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaac 317 |||| ||||| |||| ||||||||||||||| ||| |||| |||||||||| Sbjct: 145717 cggtcccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 145665
>ref|XM_472418.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 351 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggacaacggcaacaacaacg 321 |||||||||||||||||||| Sbjct: 294 ggacaacggcaacaacaacg 313
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ccggccatgttcgtgttcgg 289 |||||||||||||||||||| Sbjct: 104396 ccggccatgttcgtgttcgg 104415
>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0004M10, complete sequence Length = 152423 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||| | |||| | |||||||||||||| ||| ||| ||||||||||||| |||| Sbjct: 80796 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactacct 80855
>ref|XM_596496.2| PREDICTED: Bos taurus similar to BNIP2 motif containing molecule at the carboxyl terminal region 1 (LOC518308), mRNA Length = 8694 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tctgtcttgcatgccacaca 39 |||||||||||||||||||| Sbjct: 8452 tctgtcttgcatgccacaca 8471
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||| | |||| | |||||||||||||| ||| ||| ||||||||||||| |||| Sbjct: 15818996 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactacct 15819055
>gb|DQ462443.1| Karshi virus strain LEIV-7192 Tur, complete genome Length = 10758 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cacgtcgctggccaaggcca 345 |||||||||||||||||||| Sbjct: 8482 cacgtcgctggccaaggcca 8463
>ref|XM_499820.1| Yarrowia lipolytica CLIB122, YALI0A06787g predicted mRNA Length = 1170 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ccaactacctgccctacggc 362 |||||||||||||||||||| Sbjct: 197 ccaactacctgccctacggc 216
>emb|AL160157.17| Human DNA sequence from clone RP11-547C18 on chromosome 13 Contains the 5' end of the GUCY1B2 gene for guanylate cyclase 1 soluble beta 2 and part of a novel gene, complete sequence Length = 127227 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gcatgccacacacctaggca 47 |||||||||||||||||||| Sbjct: 119287 gcatgccacacacctaggca 119268
>emb|X85015.1|PAHEMFGEN Pseudomonas aeruginosa qor, hemF and aroE genes Length = 3101 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 acctgccctacggcatcgacttcg 372 |||||||| ||||||||||||||| Sbjct: 709 acctgcccgacggcatcgacttcg 686
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggacaacggcaacaacaacg 321 |||||||||||||||||||| Sbjct: 28774 ggacaacggcaacaacaacg 28793
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||| | |||| | |||||||||||||| ||| ||| ||||||||||||| |||| Sbjct: 15813530 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactacct 15813589
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgctcctcgcgtgcggcggc 149 |||||||||||||||||||| Sbjct: 89908 tgctcctcgcgtgcggcggc 89927
>gb|DQ198146.1| Bacteriophage 700P1 putative tape measure protein, hypothetical phage-associated protein, putative tape measure protein, hypothetical phage-associated protein, putative tail components, putative tail-host specificity protein, putative structual protein, hypothetical phage-associated proteins, and lysin genes, complete cds Length = 12959 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 gctttctgcctagctctgtcttgc 29 ||||||| |||||||||||||||| Sbjct: 1012 gctttctccctagctctgtcttgc 989
>gb|AE004441.1| Pseudomonas aeruginosa PAO1, section 2 of 529 of the complete genome Length = 12213 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 acctgccctacggcatcgacttcg 372 |||||||| ||||||||||||||| Sbjct: 11766 acctgcccgacggcatcgacttcg 11743
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggcggcctcctccacggcg 113 |||||||||||||||||||| Sbjct: 3021310 tggcggcctcctccacggcg 3021291
>gb|AY190948.1| Drosophila pseudoobscura clone DPSF01_06_H12 (D1436) genomic sequence Length = 43025 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 acaacggcaacaacaacgac 323 |||||||||||||||||||| Sbjct: 28948 acaacggcaacaacaacgac 28929
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 atggcggcctcctccacggcgacg 116 ||||||||||||||| |||||||| Sbjct: 5268015 atggcggcctcctcctcggcgacg 5268038
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tgctcctcgcgtgcggcggc 149 |||||||||||||||||||| Sbjct: 2546026 tgctcctcgcgtgcggcggc 2546045
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0409A07 Length = 146663 Score = 40.1 bits (20), Expect = 5.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 266 ggtgccggccatgttcgtgttcggcgactccctgacggacaacggcaacaacaacgacct 325 ||||||| | |||| | |||||||||||||| ||| ||| ||||||||||||| |||| Sbjct: 112796 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactacct 112855
>dbj|AK108662.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F04, full insert sequence Length = 830 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggacaacggcaacaacaacg 321 |||||||||||||||||||| Sbjct: 417 ggacaacggcaacaacaacg 436
>dbj|AK063332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A03, full insert sequence Length = 1349 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 ggacaacggcaacaacaacgacct 325 ||||||||||||||||||| |||| Sbjct: 212 ggacaacggcaacaacaaccacct 235
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ccaactacctgccctacggc 362 |||||||||||||||||||| Sbjct: 658106 ccaactacctgccctacggc 658087 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,210,735 Number of Sequences: 3902068 Number of extensions: 2210735 Number of successful extensions: 48892 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47505 Number of HSP's gapped (non-prelim): 1351 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
