ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 4e-10
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
4gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
5dbj|AK108265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 52 0.001
7gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ... 46 0.085
8gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.085
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.085
10dbj|AB114419.1| Oryza sativa (japonica cultivar-group) OsDRB2 mR... 46 0.085
11emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 46 0.085
12dbj|AK058662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.085
13dbj|AK058408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.085
14gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 44 0.33
15ref|NM_212270.1| Eremothecium gossypii AFR587Cp (AFR587C), mRNA 44 0.33
16gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.3
17ref|XM_844348.1| PREDICTED: Canis familiaris similar to interfer... 42 1.3
18gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.3
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20gb|AF449306.1| Aphanius asquamatus isolate A.asq28 16S ribosomal... 42 1.3
21gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
22dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.3
24emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.3
25gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.2
26gb|AC161202.15| Mus musculus chromosome 8, clone RP23-479K12, co... 40 5.2
27gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.2
28gb|AY297514.1| Sceloporus undulatus NADH dehydrogenase subunit 1... 40 5.2
29gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.2
30emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete ch... 40 5.2
31gb|BC044973.1| Xenopus laevis E74-like factor 1 (ets domain tran... 40 5.2
32emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.2
33gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, c... 40 5.2
34gb|AE005768.1| Caulobacter crescentus CB15 section 94 of 359 of ... 40 5.2
35gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
36gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, com... 40 5.2
37gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.2
38gb|M73782.1|CCRFLBF Caulobacter crescentus flagellar protein (fl... 40 5.2
39gb|AC008223.4|AC008223 Drosophila melanogaster, chromosome 3R, r... 40 5.2
40gb|AY078505.1| Edwardsiella tarda glutamate decarboxylase (gadB)... 40 5.2
41dbj|AB018970.2| Amphilophus citrinellus ND1, ND2 genes for NADH ... 40 5.2
42gb|AE004676.1| Pseudomonas aeruginosa PAO1, section 237 of 529 o... 40 5.2
43gb|AC010177.48| Homo sapiens 12 BAC RP11-162N7 (Roswell Park Can... 40 5.2
44dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46gb|AF025490.1| Flindersia brayleyana internal transcribed spacer... 40 5.2
47gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, com... 40 5.2
48gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82... 40 5.2
49dbj|AP004426.1| Diretmoides veriginae mitochondrial DNA, complet... 40 5.2
50gb|U07246.1|CCU07246 Cichlasoma citrinellum mitochondrion NADH d... 40 5.2
51gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.2
52gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, co... 40 5.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                          
Query: 178    gagctcacgctgctctaccgcccggccatcggcggcgcagccttggagctggccggccgc 237
              |||||||||||  |||||| |||||||||||||||||| ||  ||||||| | ||| || 
Sbjct: 772074 gagctcacgctcgtctacctcccggccatcggcggcgccgcgctggagctcggcgggcgg 772133

                                           
Query: 238    gcgctcccgccggccagccccgccgaggt 266
              |||||||||||||||   |||||||||||
Sbjct: 772134 gcgctcccgccggccgcgcccgccgaggt 772162



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    cggcgtacgccagcgcggaccgcgtctcggccgccgagggcgcgcgcttcgaggtgtacg 367
              |||||||||| ||||| ||||||||||  | ||||||||| |||||||||||||||||||
Sbjct: 772201 cggcgtacgcgagcgccgaccgcgtctgcgtcgccgagggggcgcgcttcgaggtgtacg 772260



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 111    gcgcctcgacgtgcgcgccttctacctccgcct 143
              ||||||||  || ||||||||||||||||||||
Sbjct: 772022 gcgcctcggtgtccgcgccttctacctccgcct 772054
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                          
Query: 178    gagctcacgctgctctaccgcccggccatcggcggcgcagccttggagctggccggccgc 237
              |||||||||||  |||||| |||||||||||||||||| ||  ||||||| | ||| || 
Sbjct: 772072 gagctcacgctcgtctacctcccggccatcggcggcgccgcgctggagctcggcgggcgg 772131

                                           
Query: 238    gcgctcccgccggccagccccgccgaggt 266
              |||||||||||||||   |||||||||||
Sbjct: 772132 gcgctcccgccggccgcgcccgccgaggt 772160



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    cggcgtacgccagcgcggaccgcgtctcggccgccgagggcgcgcgcttcgaggtgtacg 367
              |||||||||| ||||| ||||||||||  | ||||||||| |||||||||||||||||||
Sbjct: 772199 cggcgtacgcgagcgccgaccgcgtctgcgtcgccgagggggcgcgcttcgaggtgtacg 772258



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 111    gcgcctcgacgtgcgcgccttctacctccgcct 143
              ||||||||  || ||||||||||||||||||||
Sbjct: 772020 gcgcctcggtgtccgcgccttctacctccgcct 772052
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                         
Query: 178   gagctcacgctgctctaccgcccggccatcggcggcgcagccttggagctggccggccgc 237
             |||||||||||  |||||| |||||||||||||||||| ||  ||||||| | ||| || 
Sbjct: 67619 gagctcacgctcgtctacctcccggccatcggcggcgccgcgctggagctcggcgggcgg 67678

                                          
Query: 238   gcgctcccgccggccagccccgccgaggt 266
             |||||||||||||||   |||||||||||
Sbjct: 67679 gcgctcccgccggccgcgcccgccgaggt 67707



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                         
Query: 308   cggcgtacgccagcgcggaccgcgtctcggccgccgagggcgcgcgcttcgaggtgtacg 367
             |||||||||| ||||| ||||||||||  | ||||||||| |||||||||||||||||||
Sbjct: 67746 cggcgtacgcgagcgccgaccgcgtctgcgtcgccgagggggcgcgcttcgaggtgtacg 67805



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 111   gcgcctcgacgtgcgcgccttctacctccgcct 143
             ||||||||  || ||||||||||||||||||||
Sbjct: 67567 gcgcctcggtgtccgcgccttctacctccgcct 67599
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16,
              complete sequence
          Length = 160053

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                          
Query: 178    gagctcacgctgctctaccgcccggccatcggcggcgcagccttggagctggccggccgc 237
              |||||||||||  |||||| |||||||||||||||||| ||  ||||||| | ||| || 
Sbjct: 157955 gagctcacgctcgtctacctcccggccatcggcggcgccgcgctggagctcggcgggcgg 158014

                                           
Query: 238    gcgctcccgccggccagccccgccgaggt 266
              |||||||||||||||   |||||||||||
Sbjct: 158015 gcgctcccgccggccgcgcccgccgaggt 158043



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                          
Query: 308    cggcgtacgccagcgcggaccgcgtctcggccgccgagggcgcgcgcttcgaggtgtacg 367
              |||||||||| ||||| ||||||||||  | ||||||||| |||||||||||||||||||
Sbjct: 158082 cggcgtacgcgagcgccgaccgcgtctgcgtcgccgagggggcgcgcttcgaggtgtacg 158141



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 111    gcgcctcgacgtgcgcgccttctacctccgcct 143
              ||||||||  || ||||||||||||||||||||
Sbjct: 157903 gcgcctcggtgtccgcgccttctacctccgcct 157935
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>dbj|AK108265.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B09, full
           insert sequence
          Length = 558

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 178 gagctcacgctgctctaccgcccggccatcggcggcgc 215
           |||||||||||  |||||| ||||||||||||||||||
Sbjct: 152 gagctcacgctcgtctacctcccggccatcggcggcgc 189



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 cgcgccttctacctccgcct 143
           ||||||||||||||||||||
Sbjct: 113 cgcgccttctacctccgcct 132
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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 170  cgccagcggagctcacgctgctctaccgcccggccatcggcggcgc 215
            |||| |||||||||||||||  ||||| |||||||||||| |||||
Sbjct: 7043 cgcccgcggagctcacgctggcctaccacccggccatcgggggcgc 7088
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>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 257    ccgccgaggtcgccctcgcccgc 279
              |||||||||||||||||||||||
Sbjct: 135611 ccgccgaggtcgccctcgcccgc 135633
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>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 257   ccgccgaggtcgccctcgcccgc 279
             |||||||||||||||||||||||
Sbjct: 11721 ccgccgaggtcgccctcgcccgc 11743
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 257      ccgccgaggtcgccctcgcccgc 279
                |||||||||||||||||||||||
Sbjct: 19416385 ccgccgaggtcgccctcgcccgc 19416407
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>dbj|AB114419.1| Oryza sativa (japonica cultivar-group) OsDRB2 mRNA for hypothetical
           protein, complete cds
          Length = 1665

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 257 ccgccgaggtcgccctcgcccgc 279
           |||||||||||||||||||||||
Sbjct: 390 ccgccgaggtcgccctcgcccgc 412
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 266     tcgccctcgcccgcgtgcgcggc 288
               |||||||||||||||||||||||
Sbjct: 3287704 tcgccctcgcccgcgtgcgcggc 3287682
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>dbj|AK058662.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G05, full
           insert sequence
          Length = 1762

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 257 ccgccgaggtcgccctcgcccgc 279
           |||||||||||||||||||||||
Sbjct: 425 ccgccgaggtcgccctcgcccgc 447
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>dbj|AK058408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C03, full
           insert sequence
          Length = 1683

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 257 ccgccgaggtcgccctcgcccgc 279
           |||||||||||||||||||||||
Sbjct: 438 ccgccgaggtcgccctcgcccgc 460
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 342     cgagggcgcgcgcttcgaggtg 363
               ||||||||||||||||||||||
Sbjct: 1495659 cgagggcgcgcgcttcgaggtg 1495638
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>ref|NM_212270.1| Eremothecium gossypii AFR587Cp (AFR587C), mRNA
          Length = 2322

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 342 cgagggcgcgcgcttcgaggtg 363
           ||||||||||||||||||||||
Sbjct: 606 cgagggcgcgcgcttcgaggtg 627
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 250     gccagccccgccgaggtcgccctcg 274
               |||||| ||||||||||||||||||
Sbjct: 3149184 gccagcgccgccgaggtcgccctcg 3149208
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>ref|XM_844348.1| PREDICTED: Canis familiaris similar to interferon regulatory factor 2
            binding protein 2 (LOC488961), mRNA
          Length = 2928

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 93   gccgcggccccggacacggcg 113
            |||||||||||||||||||||
Sbjct: 1271 gccgcggccccggacacggcg 1251
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 258     cgccgaggtcgccctcgcccg 278
               |||||||||||||||||||||
Sbjct: 3159267 cgccgaggtcgccctcgcccg 3159287
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 229      gccggccgcgcgctcccgccg 249
                |||||||||||||||||||||
Sbjct: 30788311 gccggccgcgcgctcccgccg 30788331



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 138     ccgcctatcctcctcatcac 157
               ||||||||||||||||||||
Sbjct: 9162471 ccgcctatcctcctcatcac 9162452
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>gb|AF449306.1| Aphanius asquamatus isolate A.asq28 16S ribosomal RNA gene, partial
            sequence; tRNA-Leu gene, complete sequence; NADH subunit
            1 gene, complete cds; tRNA-Ile, tRNA-Gln, and tRNA-Met
            genes, complete sequence; NADH subunit 2 gene, complete
            cds; tRNA-Trp, tRNA-ALa, tRNA-Asn, tRNA-Cys, and tRNA-Tyr
            genes, complete sequence; and cytochrome oxidase subunit
            I gene, partial cds; mitochondrial genes for
            mitochondrial products
          Length = 3018

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 129  cttctacctccgcctatcctcctca 153
            |||||||||||||||||||| ||||
Sbjct: 2428 cttctacctccgcctatcctactca 2452
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 226     ctggccggccgcgcgctcccgccgg 250
               |||||||||| ||||||||||||||
Sbjct: 3594346 ctggccggcctcgcgctcccgccgg 3594370



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 267     cgccctcgcccgcgtgcgcggcgcc 291
               ||||||| |||||||||||||||||
Sbjct: 2582591 cgccctctcccgcgtgcgcggcgcc 2582615



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     tcgcccgcgtgcgcggcgcc 291
               ||||||||||||||||||||
Sbjct: 3400345 tcgcccgcgtgcgcggcgcc 3400364



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ggcgcctcgacgtgcgcgcc 129
              ||||||||||||||||||||
Sbjct: 383975 ggcgcctcgacgtgcgcgcc 383956
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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0487D09
          Length = 161531

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    gccggccgcgcgctcccgccg 249
              |||||||||||||||||||||
Sbjct: 128458 gccggccgcgcgctcccgccg 128478
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 247     ccggccagccccgccgaggtc 267
               |||||||||||||||||||||
Sbjct: 4065581 ccggccagccccgccgaggtc 4065561
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gcttcgaggtgtacgacggga 373
              |||||||||||||||||||||
Sbjct: 909148 gcttcgaggtgtacgacggga 909168



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gcttcgaggtgtacgacggga 373
              |||||||||||||||||||||
Sbjct: 907445 gcttcgaggtgtacgacggga 907465
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    ccgccgaggtcgccctcgcc 276
              ||||||||||||||||||||
Sbjct: 142163 ccgccgaggtcgccctcgcc 142182
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>gb|AC161202.15| Mus musculus chromosome 8, clone RP23-479K12, complete sequence
          Length = 175459

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gcgccgcggccccggacacg 110
             ||||||||||||||||||||
Sbjct: 91326 gcgccgcggccccggacacg 91345
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 242     tcccgccggccagccccgcc 261
               ||||||||||||||||||||
Sbjct: 1028400 tcccgccggccagccccgcc 1028381
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>gb|AY297514.1| Sceloporus undulatus NADH dehydrogenase subunit 1 (ND1) gene, partial
            cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete
            sequence; NADH dehydrogenase subunit 2 (ND2) gene,
            complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asx, tRNA-Cys, and
            tRNA-Tyr genes, complete sequence; and cytochrome oxidase
            subunit I (COI) gene, partial cds; mitochondrial genes
            for mitochondrial products
          Length = 1740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 129  cttctacctccgcctatcctcctcatca 156
            |||||||||||||||| ||| |||||||
Sbjct: 1168 cttctacctccgcctaacctactcatca 1195
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    cggcgcctcgacgtgcgcgccttc 132
              ||||||||||||||||||| ||||
Sbjct: 678507 cggcgcctcgacgtgcgcgacttc 678530
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>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    tcggccgccgagggcgcgcg 353
              ||||||||||||||||||||
Sbjct: 168933 tcggccgccgagggcgcgcg 168952
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>gb|BC044973.1| Xenopus laevis E74-like factor 1 (ets domain transcription factor),
            mRNA (cDNA clone MGC:52937 IMAGE:4930183), complete cds
          Length = 3273

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ctcagcggcaatgtgcagag 64
            ||||||||||||||||||||
Sbjct: 1789 ctcagcggcaatgtgcagag 1808
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    cgtgcgcggcgccaaggacg 298
              ||||||||||||||||||||
Sbjct: 136272 cgtgcgcggcgccaaggacg 136253
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>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence
          Length = 171605

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 232    ggccgcgcgctcccgccggccagccccg 259
              |||||||||||| |||||||| ||||||
Sbjct: 118353 ggccgcgcgctctcgccggcccgccccg 118326
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>gb|AE005768.1| Caulobacter crescentus CB15 section 94 of 359 of the complete genome
          Length = 11751

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  cgccgaggtcgccctcgccc 277
            ||||||||||||||||||||
Sbjct: 2823 cgccgaggtcgccctcgccc 2804
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    ccggccagccccgccgaggtcgcc 270
              ||||||||||| ||||||||||||
Sbjct: 252788 ccggccagcccggccgaggtcgcc 252811
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>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence
          Length = 173919

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 232    ggccgcgcgctcccgccggccagccccg 259
              |||||||||||| |||||||| ||||||
Sbjct: 106949 ggccgcgcgctctcgccggcccgccccg 106976
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     ccgcccggccatcggcggcg 214
               ||||||||||||||||||||
Sbjct: 1824028 ccgcccggccatcggcggcg 1824009
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>gb|M73782.1|CCRFLBF Caulobacter crescentus flagellar protein (flbF) gene, complete cds
          Length = 3297

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  cgccgaggtcgccctcgccc 277
            ||||||||||||||||||||
Sbjct: 2929 cgccgaggtcgccctcgccc 2910
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>gb|AC008223.4|AC008223 Drosophila melanogaster, chromosome 3R, region 95A-95A, BAC clone
             BACR16I18, complete sequence
          Length = 161278

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   cgtcgacgccgccagcggag 180
             ||||||||||||||||||||
Sbjct: 59611 cgtcgacgccgccagcggag 59592
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>gb|AY078505.1| Edwardsiella tarda glutamate decarboxylase (gadB) gene, complete
           cds
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cacgtcgacgccgccagcgg 178
           ||||||||||||||||||||
Sbjct: 947 cacgtcgacgccgccagcgg 966
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>dbj|AB018970.2| Amphilophus citrinellus ND1, ND2 genes for NADH dehydrogenase subunit
            1, NADH dehydrogenase subunit 2, partial and complete cds
          Length = 1486

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cttctacctccgcctatcct 148
            ||||||||||||||||||||
Sbjct: 1169 cttctacctccgcctatcct 1188
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>gb|AE004676.1| Pseudomonas aeruginosa PAO1, section 237 of 529 of the complete genome
          Length = 14928

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 274   gcccgcgtgcgcggcgccaaggacgacg 301
             |||||| ||||||||||||||| |||||
Sbjct: 14480 gcccgcctgcgcggcgccaaggccgacg 14507
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>gb|AC010177.48| Homo sapiens 12 BAC RP11-162N7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 56051

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gccccggcgtacgccagcgc 323
            ||||||||||||||||||||
Sbjct: 2508 gccccggcgtacgccagcgc 2489
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>dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0026F09
          Length = 124371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ccgcctatcctcctcatcac 157
             ||||||||||||||||||||
Sbjct: 65234 ccgcctatcctcctcatcac 65215
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>dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0049K19
          Length = 131932

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ccgcctatcctcctcatcac 157
             ||||||||||||||||||||
Sbjct: 22189 ccgcctatcctcctcatcac 22170
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>gb|AF025490.1| Flindersia brayleyana internal transcribed spacer 1, complete
           sequence
          Length = 305

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ccgcggccccggacacggcg 113
           ||||||||||||||||||||
Sbjct: 229 ccgcggccccggacacggcg 248
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>gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, complete sequence
          Length = 174834

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    ctggccggccgcgcgctcccgccg 249
              |||||| |||||||||||||||||
Sbjct: 103438 ctggcctgccgcgcgctcccgccg 103415
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>gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82 of 118 of the complete
              sequence
          Length = 244356

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    cgtcgacgccgccagcggag 180
              ||||||||||||||||||||
Sbjct: 108854 cgtcgacgccgccagcggag 108835
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>dbj|AP004426.1| Diretmoides veriginae mitochondrial DNA, complete genome except for
            D-loop
          Length = 16120

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cttctacctccgcctatcct 148
            ||||||||||||||||||||
Sbjct: 4903 cttctacctccgcctatcct 4922
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>gb|U07246.1|CCU07246 Cichlasoma citrinellum mitochondrion NADH dehydrogenase subunit 2
           gene, complete cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 cttctacctccgcctatcct 148
           ||||||||||||||||||||
Sbjct: 870 cttctacctccgcctatcct 889
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 159     cacgtcgacgccgccagcgg 178
               ||||||||||||||||||||
Sbjct: 4727119 cacgtcgacgccgccagcgg 4727138
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>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence
          Length = 204013

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     gcgccgcggccccggacacg 110
              ||||||||||||||||||||
Sbjct: 162314 gcgccgcggccccggacacg 162333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,043,431
Number of Sequences: 3902068
Number of extensions: 2043431
Number of successful extensions: 52742
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49817
Number of HSP's gapped (non-prelim): 2925
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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