Clone Information

BLAST Search Result

Clone Name	bast46e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) ...	33	0.13
2	Y2590_MYCBO (P59983) Hypothetical protein Mb2590	32	0.37
3	Y2560_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637	32	0.37
4	WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)	27	0.57
5	WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-W...	27	0.57
6	CHE1_ANTPO (P05686) Chorion E1 protein precursor	31	0.83
7	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	30	1.1
8	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	27	1.2
9	SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precurs...	30	1.4
10	INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finge...	30	1.4
11	VRP1_YEAST (P37370) Verprolin	30	1.8
12	INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)	26	2.3
13	CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro...	24	2.4
14	WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei...	29	2.4
15	GTR1_DROME (Q8IRI6) Glucose transporter type 1	29	2.4
16	OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b...	29	2.4
17	CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro...	24	3.0
18	SNM1_ARATH (Q38961) DNA cross-link repair protein SNM1 (AtSNM1)	29	3.2
19	TMG2_HUMAN (O14669) Transmembrane gamma-carboxyglutamic acid pro...	29	3.2
20	IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2	29	3.2
21	FMOD_MOUSE (P50608) Fibromodulin precursor (FM) (Collagen-bindin...	29	3.2
22	SYFB_STAAU (Q9AGR3) Phenylalanyl-tRNA synthetase beta chain (EC ...	28	4.1
23	CD2L7_CAEEL (P46551) Putative cell division cycle 2-related prot...	28	4.1
24	CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel al...	28	4.1
25	NAS30_CAEEL (Q9N2V2) Zinc metalloproteinase nas-30 precursor (EC...	28	4.1
26	FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protei...	28	5.4
27	AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding f...	28	5.4
28	VASP_BOVIN (Q2TA49) Vasodilator-stimulated phosphoprotein (VASP)	28	5.4
29	MATB_NEUCR (P36981) Mating- type protein a-1 (Mt a-1)	28	5.4
30	SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs...	28	5.4
31	STRC_HUMAN (Q7RTU9) Stereocilin precursor	28	5.4
32	MYO3_YEAST (P36006) Myosin-3	28	5.4
33	EHMT2_HUMAN (Q96KQ7) Histone-lysine N-methyltransferase, H3 lysi...	28	5.4
34	VP39_NPVOP (P17500) Major capsid protein	28	7.0
35	DAAM2_HUMAN (Q86T65) Disheveled-associated activator of morphoge...	28	7.0
36	WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...	28	7.0
37	RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...	28	7.0
38	TEGU_EBV (P03186) Large tegument protein	28	7.0
39	CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding...	28	7.0
40	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	27	9.2
41	USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein ho...	27	9.2
42	CEP68_PONPY (Q5RCQ2) Centrosomal protein of 68 kDa (Cep68 protein)	27	9.2
43	ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3	27	9.2
44	IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 ...	27	9.2
45	RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X ...	27	9.2
46	ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr...	27	9.2
47	Y4NJ_RHISN (P55582) Hypothetical GMC-type oxidoreductase y4nJ	27	9.2
48	CEP68_HUMAN (Q76N32) Centrosomal protein of 68 kDa (Cep68 protein)	27	9.2
49	ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...	27	9.2
50	PCAF_HUMAN (Q92831) Histone acetyltransferase PCAF (EC 2.3.1.48)...	27	9.2
51	IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Ir...	27	9.2
52	FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead...	27	9.2
53	TFEB_HUMAN (P19484) Transcription factor EB	27	9.2
54	SMA3_CAEEL (P45896) Dwarfin sma-3 (MAD protein homolog 2)	27	9.2
55	FMOD_RAT (P50609) Fibromodulin precursor (FM) (Collagen-binding ...	27	9.2

>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 146 GAPPPPPCRRLCIVAFLVSPSSIHPSITSCLSARR 250
           GAPPPP C   C++  L SP+S+      CLS  R
Sbjct: 580 GAPPPPTCSIECLLCLLSSPNSL------CLSPNR 608

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>Y2590_MYCBO (P59983) Hypothetical protein Mb2590|
          Length = 325

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P  PG  A P   N  AGS     +GAPPPPP
Sbjct: 5   PEHPGNPADPQGGNQGAGSYPPPGYGAPPPPP 36

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>Y2560_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637|
          Length = 325

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P  PG  A P   N  AGS     +GAPPPPP
Sbjct: 5   PEHPGNPADPQGGNQGAGSYPPPGYGAPPPPP 36

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>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 26.9 bits (58), Expect(2) = 0.57
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172
           PPS G    P    H +G     A   GAPPPPP R
Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 313



 Score = 23.1 bits (48), Expect(2) = 0.57
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220
           APPPPP  R  +V     P+ ++P
Sbjct: 318 APPPPPPSRPGVVVPPPPPNRMYP 341

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>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 26.9 bits (58), Expect(2) = 0.57
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172
           PPS G    P    H +G     A   GAPPPPP R
Sbjct: 278 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 313



 Score = 23.1 bits (48), Expect(2) = 0.57
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220
           APPPPP  R  +V     P+ ++P
Sbjct: 318 APPPPPPSRPGVVVPPPPPNRMYP 341

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>CHE1_ANTPO (P05686) Chorion E1 protein precursor|
          Length = 169

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 28  LGSLASQPTPYGLLP--SLPRPPRQTRLHQPSCRL 126
           LGSL +QP  Y L+P  S+P  P  +     SCRL
Sbjct: 14  LGSLVAQPITYTLVPTSSIPSQPTTSNERNKSCRL 48

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 71   PPSPGPLAKPDSINHHAGSA----VAWIHGAPPPPPCRR 175
            PPSP   A P + +HH+  A    V  + GA PP P RR
Sbjct: 1380 PPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARR 1418

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 26.9 bits (58), Expect(2) = 1.2
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172
           PPS G    P    H +G     A   GAPPPPP R
Sbjct: 281 PPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSR 316



 Score = 21.9 bits (45), Expect(2) = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 149 APPPPPCRRLCIVAFLVSPSSIHP 220
           APPPPP  R  + A    P+ ++P
Sbjct: 321 APPPPPPSRPGVGAPPPPPNRMYP 344

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>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHG-------APPPPPCRR 175
           PP P P  KP          V+WIHG       AP PPP  R
Sbjct: 646 PPPPDPATKP---------KVSWIHGKHSAAAAAPSPPPAGR 678

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>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 74  PSPGPLAKPD----SINHHAG--SAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHPS 223
           PSPGPL  P     +   HA   +A+A   G PPPPP       A   +P + HP+
Sbjct: 46  PSPGPLPPPPPPALAERAHAALAAALACAPGPPPPPPPGPR--AAHFGNPEAAHPA 99

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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +2

Query: 41  LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIH---GAPPPPPCRRLCIVAFLVSPSS 211
           ++S  P++S PP PG +  P   +  AG      H    A   P            SPS+
Sbjct: 72  VSSKGPSMSAPPIPG-MGAPQLGDILAGGIPKLKHINNNASTKP------------SPSA 118

Query: 212 IHPSITSCLSARRFVVASY*VARDRMQDLFSVPSCFSSGEKQLPDAPASAAP 367
             P I   + +    VA+  +    +    +VPS  SS    +PD P+SAAP
Sbjct: 119 SAPPIPGAVPS----VAAPPIPNAPLSPAPAVPSIPSSSAPPIPDIPSSAAP 166

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>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 25.8 bits (55), Expect(2) = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 41  LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           LA+  P  + PP+    A   + N+  G+A +     PPPPP
Sbjct: 122 LATPAPFAASPPTSIANANNTNNNNALGAAGSLSSQPPPPPP 163



 Score = 21.9 bits (45), Expect(2) = 2.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 156 HHPRAAAYV**PSLLAHRPSIPPSP 230
           HHP        P + A  PS+PP P
Sbjct: 184 HHPN-------PFVAASAPSLPPPP 201

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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 24.3 bits (51), Expect(2) = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 28  LGSLASQPTPYGLLPSLPRPP 90
           +  L   P   GLLP+ PRPP
Sbjct: 504 INPLPKPPPGVGLLPTPPRPP 524



 Score = 23.5 bits (49), Expect(2) = 2.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P  PGP A P S N         + G PPPPP
Sbjct: 521 PRPPGPQA-PTSPNGRP------MQGGPPPPP 545

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>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 50  LRPTVSCPPSPGPLAKPDS-INHHAGSAVAWIHGAPPPPPCRR 175
           L P    PP+P P+  P S +N   G +   +  APPPPP R+
Sbjct: 217 LHPGREGPPAPPPVKPPPSPVNIRTGPSGQSL--APPPPPYRQ 257

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>GTR1_DROME (Q8IRI6) Glucose transporter type 1|
          Length = 656

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 34  SLASQPTPYGLLPSLPRPPRQTRLHQP 114
           S+++   P+G LP LP P R T++ QP
Sbjct: 25  SISNDQDPFGQLPPLPPPLRSTQVLQP 51

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>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)|
           (L(1)omb) (Protein bifid)
          Length = 972

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCIVAFLV-SPSSIHPSI 226
           P  P  L  P   +H         H APPPPP      +A L  SP+  HP +
Sbjct: 213 PAGPTGLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHPGL 265

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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 24.3 bits (51), Expect(2) = 3.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 28  LGSLASQPTPYGLLPSLPRPP 90
           +  L   P   GLLP+ PRPP
Sbjct: 503 INPLPKPPPGVGLLPTPPRPP 523



 Score = 23.1 bits (48), Expect(2) = 3.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P  PGP A P S N         + G PPPPP
Sbjct: 520 PRPPGPPA-PTSPNGRP------MQGGPPPPP 544

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>SNM1_ARATH (Q38961) DNA cross-link repair protein SNM1 (AtSNM1)|
          Length = 484

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 110 NHHAGSAVAWIHGAPPPPPCR----RLCIVAFLVSPSSIHP 220
           +H+ G   AW HG   P  C     RL  ++  V+PSSIHP
Sbjct: 180 DHYIGLTKAWSHG---PIYCSSLTSRLLRLSLSVNPSSIHP 217

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>TMG2_HUMAN (O14669) Transmembrane gamma-carboxyglutamic acid protein 2|
           precursor (Proline-rich Gla protein 2) (Proline-rich
           gamma-carboxyglutamic acid protein 2)
          Length = 202

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 41  LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPP 163
           L  L P    PP P P   P    +    A + +H APPPP
Sbjct: 156 LNPLGPPTPLPPPPPP--PPGLPTYEQALAASGVHDAPPPP 194

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>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPP 163
           PP+P P A P S++   G AV    G P PP
Sbjct: 195 PPAPRPSASPSSMSPRPGGAVG--GGGPRPP 223

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>FMOD_MOUSE (P50608) Fibromodulin precursor (FM) (Collagen-binding 59 kDa|
           protein) (Keratan sulfate proteoglycan fibromodulin)
           (KSPG fibromodulin)
          Length = 376

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 29  WVR*LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCR 172
           W++ L + + T   P  P P    +   +      A+ +GAPPPP  R
Sbjct: 27  WIQYLRNQQSTYYDPYDPYPYEPSEPYPYGVEEGPAYAYGAPPPPEPR 74

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>SYFB_STAAU (Q9AGR3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 800

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 185 VAFLVSPSSIHPSITSCLSARRFVVASY*VAR-DRMQDLFSVPSC-FSSGEKQLPD 346
           +  L+  S  H S+   L      VASY VAR ++   LF + +  F++GE +LPD
Sbjct: 540 IDLLMPMSEAHASLRQSLLPHLIEVASYNVARKNKDVKLFEIGNVFFANGEGELPD 595

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>CD2L7_CAEEL (P46551) Putative cell division cycle 2-related protein kinase 7|
           (EC 2.7.11.22)
          Length = 730

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 50  LRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           + P    PP+P  +  P    H A +A   +   PPPPP
Sbjct: 218 MTPPPRPPPAPFSIPPPSVDIHFAATASFSLSSIPPPPP 256

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>CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel alpha-1E subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.3)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 6)
            (Brain calcium channel II) (BII)
          Length = 2312

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
 Frame = +2

Query: 47   SLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCI----VAFLVSPSSI 214
            S R     PP P PL    S+  HAGS      G+    P     +         S +S 
Sbjct: 2154 SRRQLPPVPPKPRPLLSYSSLIRHAGSISPPADGSEEGSPLTSQALESNNACLTESSNSP 2213

Query: 215  HPSITSCLSARRFVVASY 268
            HP  +   S +R++   Y
Sbjct: 2214 HPQQSQHASPQRYISEPY 2231

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>NAS30_CAEEL (Q9N2V2) Zinc metalloproteinase nas-30 precursor (EC 3.4.24.21)|
           (Nematode astacin 30)
          Length = 746

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 89  LAKPDSINHHAGSAVAWIHGAPPPPP 166
           L+  + +++     + WI G PPPPP
Sbjct: 592 LSNANIVDYEVSYKLQWIQGTPPPPP 617

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>FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protein 3)|
          Length = 338

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = +2

Query: 74  PSPGPLAKPDSINHHAGSAVA------WIHGAPPPPP 166
           P PGPLA+   +    GSA A      W+   PPPPP
Sbjct: 230 PGPGPLAE---VRDLPGSAPAKEDGFSWLLPPPPPPP 263

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>AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
          Length = 646

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCR 172
           PP P P A   ++N+ AGS    +    PPPP R
Sbjct: 589 PPPPPPPAPAPAVNNPAGS----VRKVAPPPPKR 618

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>VASP_BOVIN (Q2TA49) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 382

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P    PP PGP   P   +    +A     G PPP P
Sbjct: 174 PPPGPPPPPGPPPPPGLSSSGVSAATQGAGGGPPPAP 210

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>MATB_NEUCR (P36981) Mating- type protein a-1 (Mt a-1)|
          Length = 382

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
 Frame = +2

Query: 71  PPSPGP---LAKPDSIN---HHAGSAVAWIHGA--------PPPPPCRRLCIVAFLVSP 205
           PP+P P      PD +    H+  + +A +  A        PPPPP R L +  +L+ P
Sbjct: 316 PPNPNPHLDFVHPDGMEAVVHNVQNMIAQVQEANEAAALTLPPPPPLRLLSLRLWLMIP 374

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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHG---------APPPPP 166
           PP P P  KP          V+WIHG         AP PPP
Sbjct: 654 PPPPDPATKP---------KVSWIHGKHSAAAAGRAPSPPP 685

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>STRC_HUMAN (Q7RTU9) Stereocilin precursor|
          Length = 1775

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 AVAWIHGAPPPPPCRRLCIVAFLVSPSSIHPS 223
           A+ ++ G+PPPPP    C+   +  P +  PS
Sbjct: 304 ALGFLSGSPPPPPALLHCLSTGVPLPRASQPS 335

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>MYO3_YEAST (P36006) Myosin-3|
          Length = 1273

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 62   VSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
            VS PPS G     + +     +A A I   PPPPP
Sbjct: 1083 VSMPPSKGVEKNKEPLKETTATATANIPIPPPPPP 1117

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>EHMT2_HUMAN (Q96KQ7) Histone-lysine N-methyltransferase, H3 lysine-9 specific 3|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Euchromatic histone-lysine
           N-methyltransferase 2) (HLA-B-associated transcript 8)
           (Protein G9a)
          Length = 1210

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAK--PDSINHHAGSAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHPSIT 229
           P  +  P+P PL++  P   +    SA    HG P  PPC  L        PS   P+  
Sbjct: 557 PAGTAAPAPPPLSQDVPGRADTSQPSARMRGHGEPRRPPCDPLADTIDSSGPSLTLPN-G 615

Query: 230 SCLSA 244
            CLSA
Sbjct: 616 GCLSA 620

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>VP39_NPVOP (P17500) Major capsid protein|
          Length = 351

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 299 FSVPSCFSSGEKQLPDAPASAAPA 370
           F VP   ++ E Q P APA AAPA
Sbjct: 320 FGVPQAVNNLEAQAPAAPAPAAPA 343

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>DAAM2_HUMAN (Q86T65) Disheveled-associated activator of morphogenesis 2|
          Length = 1068

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/65 (29%), Positives = 22/65 (33%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHPSITSC 235
           P   CPP P P   P               G PP PP    C+   L  P   +PS    
Sbjct: 548 PFACCPPPPPPPLPP---------------GGPPTPPGAPPCLGMGLPLPQDPYPSSDVP 592

Query: 236 LSARR 250
           L  +R
Sbjct: 593 LRKKR 597

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>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAV--AWIHGAPPPPPCR 172
           PPS G    P    H++G     A   GAPPPPP R
Sbjct: 281 PPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSR 316

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>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 71  PPSP-GPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           PPSP GP   P +     GS      GAPPPPP
Sbjct: 97  PPSPPGPPLPPSTAPSLGGS------GAPPPPP 123

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
 Frame = +2

Query: 41  LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWI--------HGAPPPPPCRRLCIVAFL 196
           L   +PT S  P+P PL         A  A + +           P PPP ++L   A  
Sbjct: 557 LPQQQPTPSAAPAPSPLLPQQQPPPSAARAPSPLPPQQQPLPSATPAPPPAQQLPPSATT 616

Query: 197 VSPSSIHP 220
           + P   HP
Sbjct: 617 LEPEKNHP 624

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>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 2)
           (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
           (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
 Frame = +2

Query: 44  ASLRPTVSCPPSPGPLAK-------PDSINHHAGSAVAWIHGAPPPP---PCR 172
           +S RP +S P   GP  +       P S + H G+    +  APPPP   PC+
Sbjct: 139 SSRRPLLSSPSWGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKPCK 191

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 47  SLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRR 175
           S+ P ++    P PL  P S    A  A       PPPPP RR
Sbjct: 279 SMNPAINSTSKP-PLPPPSSRVSAAALAANKKRPPPPPPPSRR 320

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>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ|
           domain-containing protein)
          Length = 910

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 56  PTVSCPPS-PGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           P+V+ P   P P   P S  H + S+  W+   PPP P
Sbjct: 568 PSVNSPSKVPAPPVLPSS-GHVSSSSSPWVQRTPPPIP 604

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>CEP68_PONPY (Q5RCQ2) Centrosomal protein of 68 kDa (Cep68 protein)|
          Length = 751

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 79  PRPPRQTRLHQPSCRLRCCMDPWRSXXXXXXXXMYSSLP 195
           PRP R+ R  Q + R  C    W+S         Y +LP
Sbjct: 442 PRPEREKRTSQSARRPTCTESRWKSEEEVESDDEYLALP 480

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>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAKPD 103
           P   CPP PGP A P+
Sbjct: 111 PAAPCPPPPGPAAAPE 126

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>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1)
          Length = 712

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCRRLCIVA 190
           P    PP P P   P S      S+V+ + GA P P C  LC ++
Sbjct: 164 PASLWPPPPSPA--PSSTKPGPESSVSLLQGARPFPFCWPLCEIS 206

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>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 71  PPSPGPLAKPDSINHHAGSAVAWIHGAPPPPP 166
           PPSP  L  P S     G +     GAPPPPP
Sbjct: 97  PPSPPGLPLPPSSAPTLGGS-----GAPPPPP 123

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>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 125 SAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHP 220
           S   W  G PPPPP  R      L++ S+ HP
Sbjct: 433 SQAVWSQGPPPPPPYGR------LLANSNAHP 458

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>Y4NJ_RHISN (P55582) Hypothetical GMC-type oxidoreductase y4nJ|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 59  TVSCPPSPGPLAKPDSINHHAGSAVAW 139
           TV+   +PGPL +P  I    G A+ W
Sbjct: 134 TVNASLTPGPLGRPTDILRLGGEALGW 160

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>CEP68_HUMAN (Q76N32) Centrosomal protein of 68 kDa (Cep68 protein)|
          Length = 757

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 79  PRPPRQTRLHQPSCRLRCCMDPWRSXXXXXXXXMYSSLP 195
           PRP R+ R  Q + R  C    W+S         Y +LP
Sbjct: 448 PRPEREKRTSQSARRPTCTESRWKSEEEVESDDEYLALP 486

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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 125 SAVAWIHGAPPPPPCRRLCIVAFLVSPSSIHP 220
           S   W  G PPPPP  R      L++ S+ HP
Sbjct: 434 SQAVWSQGPPPPPPYGR------LLANSNAHP 459

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>PCAF_HUMAN (Q92831) Histone acetyltransferase PCAF (EC 2.3.1.48)|
           (P300/CBP-associated factor) (P/CAF) (Histone acetylase
           PCAF)
          Length = 832

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 123 PA*WLMESGLARGPGEGGQETVGRRLAS*RTQPRWK 16
           PA  +  +G A GPG GG   +  + A  R+ PR K
Sbjct: 54  PATAVAAAGTAEGPGGGGSARIAVKKAQLRSAPRAK 89

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>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 68  CPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCR 172
           CPP PGP+         AG A+     +P P P R
Sbjct: 358 CPPCPGPI---------AGQALGGSRASPAPAPSR 383

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>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
 Frame = +2

Query: 56  PTVSCPPSPGPLAKPDSINHHAGSAVA-----WIHGAPPPPP 166
           P    PP P P   P    HH  +A A       HGA  PPP
Sbjct: 277 PAAPPPPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPP 318

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>TFEB_HUMAN (P19484) Transcription factor EB|
          Length = 476

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 149 APPPPPCRRLCIVAFLVSPSSIHPSITSCLSARRFVVASY*VARDRMQDLFSVPSCFSSG 328
           +PPP P   L + ++L +P+S H   +     R ++  +Y        + F+     + G
Sbjct: 61  SPPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETY-------GNKFAAHISPAQG 113

Query: 329 EKQLPDAPASAAPATRSG 382
               P  P +A+P  R+G
Sbjct: 114 S---PKPPPAASPGVRAG 128

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>SMA3_CAEEL (P45896) Dwarfin sma-3 (MAD protein homolog 2)|
          Length = 393

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 65  SCPPSPGPLAKPDSINHHAGSAVAWIHGAPPP 160
           S  PSP P++ P++I   +GS+ A    +P P
Sbjct: 141 SSMPSPQPISSPNTIWQSSGSSTASCASSPSP 172

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>FMOD_RAT (P50609) Fibromodulin precursor (FM) (Collagen-binding 59 kDa|
           protein) (Keratan sulfate proteoglycan fibromodulin)
           (KSPG fibromodulin)
          Length = 376

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 29  WVR*LASLRPTVSCPPSPGPLAKPDSINHHAGSAVAWIHGAPPPPPCR 172
           W++ L + + T   P    P    D   +      A+ +GAPPPP  R
Sbjct: 27  WLQYLRNQQSTYYDPYDTYPYETSDPYPYEVEEGPAYAYGAPPPPEPR 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,257,100
Number of Sequences: 219361
Number of extensions: 1015695
Number of successful extensions: 4065
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 3553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4005
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result