ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450293.1| Oryza sativa (japonica cultivar-group), mRNA Length = 957 Score = 295 bits (149), Expect = 7e-77 Identities = 314/369 (85%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 330 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 389 Query: 61 cctttagggatcatcaaatttgaggtgttcgaccgggaccggttcaagtacgacgacaag 120 || |||| |||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct: 390 ccagcaggggtcatcaaattcgaggtgttcgactgggaccggttcaagtacgacgataaa 449 Query: 121 atgggccacgccttcctcgacctgcagccgatggccgcggcgaccaagctgcagcgcgcg 180 ||||| ||||| || || || ||||||||| ||||||||||| | ||||||| ||| ||| Sbjct: 450 atggggcacgcgtttcttgagctgcagccggtggccgcggcggcgaagctgcggcgtgcg 509 Query: 181 ctcaagctcaccaagggggagaccaggctccggaaggtgcccccgaccgccgacaactgc 240 || ||| || | ||||||||||| |||||||||||| || | | || |||||||||| Sbjct: 510 ctgcggctgacgacgggggagaccaagctccggaaggttgccgccagcgtcgacaactgc 569 Query: 241 ctgctctccgacagcttcgtcacgtacgccgacggcgagatcgtgctcgactcccggctg 300 || | | |||||||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct: 570 ctcatgtgcgacagcttcgtgacgtacgccgacggtgagatcgtgctcgacgccaggctg 629 Query: 301 cggctgcgcgacgtcgagtccggggagctcttcatcaccgtcaagtggatcgaagccgac 360 ||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct: 630 cggctgcgcgacgtcgagtccggcgagctgttcgtcactgtcaagtggatcgatgcgaac 689 Query: 361 gccaagtga 369 ||||||||| Sbjct: 690 gccaagtga 698
>ref|XM_506640.1| PREDICTED Oryza sativa (japonica cultivar-group), B1080A02.31 mRNA Length = 1001 Score = 295 bits (149), Expect = 7e-77 Identities = 314/369 (85%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 345 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 404 Query: 61 cctttagggatcatcaaatttgaggtgttcgaccgggaccggttcaagtacgacgacaag 120 || |||| |||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct: 405 ccagcaggggtcatcaaattcgaggtgttcgactgggaccggttcaagtacgacgataaa 464 Query: 121 atgggccacgccttcctcgacctgcagccgatggccgcggcgaccaagctgcagcgcgcg 180 ||||| ||||| || || || ||||||||| ||||||||||| | ||||||| ||| ||| Sbjct: 465 atggggcacgcgtttcttgagctgcagccggtggccgcggcggcgaagctgcggcgtgcg 524 Query: 181 ctcaagctcaccaagggggagaccaggctccggaaggtgcccccgaccgccgacaactgc 240 || ||| || | ||||||||||| |||||||||||| || | | || |||||||||| Sbjct: 525 ctgcggctgacgacgggggagaccaagctccggaaggttgccgccagcgtcgacaactgc 584 Query: 241 ctgctctccgacagcttcgtcacgtacgccgacggcgagatcgtgctcgactcccggctg 300 || | | |||||||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct: 585 ctcatgtgcgacagcttcgtgacgtacgccgacggtgagatcgtgctcgacgccaggctg 644 Query: 301 cggctgcgcgacgtcgagtccggggagctcttcatcaccgtcaagtggatcgaagccgac 360 ||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct: 645 cggctgcgcgacgtcgagtccggcgagctgttcgtcactgtcaagtggatcgatgcgaac 704 Query: 361 gccaagtga 369 ||||||||| Sbjct: 705 gccaagtga 713
>dbj|AK104010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-C07, full insert sequence Length = 957 Score = 295 bits (149), Expect = 7e-77 Identities = 314/369 (85%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 330 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 389 Query: 61 cctttagggatcatcaaatttgaggtgttcgaccgggaccggttcaagtacgacgacaag 120 || |||| |||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct: 390 ccagcaggggtcatcaaattcgaggtgttcgactgggaccggttcaagtacgacgataaa 449 Query: 121 atgggccacgccttcctcgacctgcagccgatggccgcggcgaccaagctgcagcgcgcg 180 ||||| ||||| || || || ||||||||| ||||||||||| | ||||||| ||| ||| Sbjct: 450 atggggcacgcgtttcttgagctgcagccggtggccgcggcggcgaagctgcggcgtgcg 509 Query: 181 ctcaagctcaccaagggggagaccaggctccggaaggtgcccccgaccgccgacaactgc 240 || ||| || | ||||||||||| |||||||||||| || | | || |||||||||| Sbjct: 510 ctgcggctgacgacgggggagaccaagctccggaaggttgccgccagcgtcgacaactgc 569 Query: 241 ctgctctccgacagcttcgtcacgtacgccgacggcgagatcgtgctcgactcccggctg 300 || | | |||||||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct: 570 ctcatgtgcgacagcttcgtgacgtacgccgacggtgagatcgtgctcgacgccaggctg 629 Query: 301 cggctgcgcgacgtcgagtccggggagctcttcatcaccgtcaagtggatcgaagccgac 360 ||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct: 630 cggctgcgcgacgtcgagtccggcgagctgttcgtcactgtcaagtggatcgatgcgaac 689 Query: 361 gccaagtga 369 ||||||||| Sbjct: 690 gccaagtga 698
>dbj|AK061218.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E07, full insert sequence Length = 1001 Score = 295 bits (149), Expect = 7e-77 Identities = 314/369 (85%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 345 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 404 Query: 61 cctttagggatcatcaaatttgaggtgttcgaccgggaccggttcaagtacgacgacaag 120 || |||| |||||||||| |||||||||||| |||||||||||||||||||||| || Sbjct: 405 ccagcaggggtcatcaaattcgaggtgttcgactgggaccggttcaagtacgacgataaa 464 Query: 121 atgggccacgccttcctcgacctgcagccgatggccgcggcgaccaagctgcagcgcgcg 180 ||||| ||||| || || || ||||||||| ||||||||||| | ||||||| ||| ||| Sbjct: 465 atggggcacgcgtttcttgagctgcagccggtggccgcggcggcgaagctgcggcgtgcg 524 Query: 181 ctcaagctcaccaagggggagaccaggctccggaaggtgcccccgaccgccgacaactgc 240 || ||| || | ||||||||||| |||||||||||| || | | || |||||||||| Sbjct: 525 ctgcggctgacgacgggggagaccaagctccggaaggttgccgccagcgtcgacaactgc 584 Query: 241 ctgctctccgacagcttcgtcacgtacgccgacggcgagatcgtgctcgactcccggctg 300 || | | |||||||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct: 585 ctcatgtgcgacagcttcgtgacgtacgccgacggtgagatcgtgctcgacgccaggctg 644 Query: 301 cggctgcgcgacgtcgagtccggggagctcttcatcaccgtcaagtggatcgaagccgac 360 ||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct: 645 cggctgcgcgacgtcgagtccggcgagctgttcgtcactgtcaagtggatcgatgcgaac 704 Query: 361 gccaagtga 369 ||||||||| Sbjct: 705 gccaagtga 713
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 246 bits (124), Expect = 5e-62 Identities = 247/288 (85%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccggttcaagtacgacgacaagatgggccacgccttcctcgac 141 |||||||||||| |||||||||||||||||||||| || ||||| ||||| || || || Sbjct: 3898484 gaggtgttcgactgggaccggttcaagtacgacgataaaatggggcacgcgtttcttgag 3898543 Query: 142 ctgcagccgatggccgcggcgaccaagctgcagcgcgcgctcaagctcaccaagggggag 201 ||||||||| ||||||||||| | ||||||| ||| ||||| ||| || | ||||||| Sbjct: 3898544 ctgcagccggtggccgcggcggcgaagctgcggcgtgcgctgcggctgacgacgggggag 3898603 Query: 202 accaggctccggaaggtgcccccgaccgccgacaactgcctgctctccgacagcttcgtc 261 |||| |||||||||||| || | | || |||||||||||| | | |||||||||||| Sbjct: 3898604 accaagctccggaaggttgccgccagcgtcgacaactgcctcatgtgcgacagcttcgtg 3898663 Query: 262 acgtacgccgacggcgagatcgtgctcgactcccggctgcggctgcgcgacgtcgagtcc 321 |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 3898664 acgtacgccgacggtgagatcgtgctcgacgccaggctgcggctgcgcgacgtcgagtcc 3898723 Query: 322 ggggagctcttcatcaccgtcaagtggatcgaagccgacgccaagtga 369 || ||||| ||| |||| |||||||||||||| || ||||||||||| Sbjct: 3898724 ggcgagctgttcgtcactgtcaagtggatcgatgcgaacgccaagtga 3898771 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 3897829 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 3897888 Query: 61 cctttagggatcatcaaatt 80 || |||| |||||||||| Sbjct: 3897889 ccagcaggggtcatcaaatt 3897908
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 246 bits (124), Expect = 5e-62 Identities = 247/288 (85%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccggttcaagtacgacgacaagatgggccacgccttcctcgac 141 |||||||||||| |||||||||||||||||||||| || ||||| ||||| || || || Sbjct: 138000 gaggtgttcgactgggaccggttcaagtacgacgataaaatggggcacgcgtttcttgag 138059 Query: 142 ctgcagccgatggccgcggcgaccaagctgcagcgcgcgctcaagctcaccaagggggag 201 ||||||||| ||||||||||| | ||||||| ||| ||||| ||| || | ||||||| Sbjct: 138060 ctgcagccggtggccgcggcggcgaagctgcggcgtgcgctgcggctgacgacgggggag 138119 Query: 202 accaggctccggaaggtgcccccgaccgccgacaactgcctgctctccgacagcttcgtc 261 |||| |||||||||||| || | | || |||||||||||| | | |||||||||||| Sbjct: 138120 accaagctccggaaggttgccgccagcgtcgacaactgcctcatgtgcgacagcttcgtg 138179 Query: 262 acgtacgccgacggcgagatcgtgctcgactcccggctgcggctgcgcgacgtcgagtcc 321 |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 138180 acgtacgccgacggtgagatcgtgctcgacgccaggctgcggctgcgcgacgtcgagtcc 138239 Query: 322 ggggagctcttcatcaccgtcaagtggatcgaagccgacgccaagtga 369 || ||||| ||| |||| |||||||||||||| || ||||||||||| Sbjct: 138240 ggcgagctgttcgtcactgtcaagtggatcgatgcgaacgccaagtga 138287 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 137345 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 137404 Query: 61 cctttagggatcatcaaatt 80 || |||| |||||||||| Sbjct: 137405 ccagcaggggtcatcaaatt 137424
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 246 bits (124), Expect = 5e-62 Identities = 247/288 (85%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccggttcaagtacgacgacaagatgggccacgccttcctcgac 141 |||||||||||| |||||||||||||||||||||| || ||||| ||||| || || || Sbjct: 29996 gaggtgttcgactgggaccggttcaagtacgacgataaaatggggcacgcgtttcttgag 30055 Query: 142 ctgcagccgatggccgcggcgaccaagctgcagcgcgcgctcaagctcaccaagggggag 201 ||||||||| ||||||||||| | ||||||| ||| ||||| ||| || | ||||||| Sbjct: 30056 ctgcagccggtggccgcggcggcgaagctgcggcgtgcgctgcggctgacgacgggggag 30115 Query: 202 accaggctccggaaggtgcccccgaccgccgacaactgcctgctctccgacagcttcgtc 261 |||| |||||||||||| || | | || |||||||||||| | | |||||||||||| Sbjct: 30116 accaagctccggaaggttgccgccagcgtcgacaactgcctcatgtgcgacagcttcgtg 30175 Query: 262 acgtacgccgacggcgagatcgtgctcgactcccggctgcggctgcgcgacgtcgagtcc 321 |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 30176 acgtacgccgacggtgagatcgtgctcgacgccaggctgcggctgcgcgacgtcgagtcc 30235 Query: 322 ggggagctcttcatcaccgtcaagtggatcgaagccgacgccaagtga 369 || ||||| ||| |||| |||||||||||||| || ||||||||||| Sbjct: 30236 ggcgagctgttcgtcactgtcaagtggatcgatgcgaacgccaagtga 30283 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 1 gtcatcaacagttgcctcaatccagtttggaacgaggagatggtcttctccgtcaaggaa 60 ||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||| Sbjct: 29341 gtcatcaacagctgcctaaacccagtttggaacgaagagatgtccttctccatcgaagaa 29400 Query: 61 cctttagggatcatcaaatt 80 || |||| |||||||||| Sbjct: 29401 ccagcaggggtcatcaaatt 29420
>gb|AY110895.1| Zea mays CL37048_1 mRNA sequence Length = 560 Score = 145 bits (73), Expect = 1e-31 Identities = 211/257 (82%) Strand = Plus / Minus Query: 82 gaggtgttcgaccgggaccggttcaagtacgacgacaagatgggccacgccttcctcgac 141 |||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 363 gaggtgttcgactgggaccggttcaagtacgacgacaagatgggccaggctttcctggac 304 Query: 142 ctgcagccgatggccgcggcgaccaagctgcagcgcgcgctcaagctcaccaagggggag 201 |||||||| |||| ||||| |||||||||| | | ||||| |||||| || ||| Sbjct: 303 ctgcagcctgtggcggcggcaaccaagctgcggagggcgctgcggctcacagctggcgag 244 Query: 202 accaggctccggaaggtgcccccgaccgccgacaactgcctgctctccgacagcttcgtc 261 |||| || ||||| ||| |||| |||||||||||| |||||||| || |||||||| Sbjct: 243 accaacctgcggaaagtgaacccggacgccgacaactgtctgctctcagatagcttcgtg 184 Query: 262 acgtacgccgacggcgagatcgtgctcgactcccggctgcggctgcgcgacgtcgagtcc 321 ||||||||| |||| ||| ||| | | || | ||||||||||||| || ||||||||| Sbjct: 183 acgtacgccaacggggaggtcgcgatagatgctaggctgcggctgcgtgaggtcgagtcc 124 Query: 322 ggggagctcttcatcac 338 || ||||| ||| |||| Sbjct: 123 ggcgagctgttcgtcac 107
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 cgtgctcgactcccggctgcggc 304 ||||||||||||||||||||||| Sbjct: 766169 cgtgctcgactcccggctgcggc 766191 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 acgccgacggcgagatcgtg 285 |||||||||||||||||||| Sbjct: 3295676 acgccgacggcgagatcgtg 3295695
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 134 tcctcgacctgcagccgatggccgcgg 160 ||||||||||||||||||| ||||||| Sbjct: 3022268 tcctcgacctgcagccgatcgccgcgg 3022242
>gb|AF076240.1|AF076240 Rhizobium leguminosarum plasmid pSyma MocC (mocC), putative NADH-inositol dehydrogenase MocA (mocA), putative rhizopine periplasmic transport protein MocB precursor (mocB), putative regulatory protein MocR (mocR), putative hydrocarbon oxygenase MocD (mocD), putative Rieske-like ferredoxin MocE (mocE), and putative ferredoxin reductase MocF (mocF) genes, complete cds; and unknown genes Length = 11166 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 cgcgctcaagctcaccaagggggag 201 ||||||||||||| ||||||||||| Sbjct: 5484 cgcgctcaagctcgccaagggggag 5460
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 atcatcaaatttgaggtgttc 90 ||||||||||||||||||||| Sbjct: 24641880 atcatcaaatttgaggtgttc 24641860
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A06 Length = 92836 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 atcatcaaatttgaggtgttc 90 ||||||||||||||||||||| Sbjct: 14184 atcatcaaatttgaggtgttc 14164
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 cgccgacggcgagatcgtgct 287 ||||||||||||||||||||| Sbjct: 3768936 cgccgacggcgagatcgtgct 3768916
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 ccaagctgcagcgcgcgctca 184 ||||||||||||||||||||| Sbjct: 1205873 ccaagctgcagcgcgcgctca 1205853
>ref|XM_477223.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1648 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 1286 gaggtgttcgaccgggaccg 1305
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccggctgcggctgcgcgacg 313 |||||||||||||||||||| Sbjct: 1290768 ccggctgcggctgcgcgacg 1290787
>ref|XM_756814.1| Ustilago maydis 521 hypothetical protein (UM05760.1) partial mRNA Length = 4302 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 cgcgctcaagctcaccaaggggga 200 |||||||||||||| ||||||||| Sbjct: 3682 cgcgctcaagctcaacaaggggga 3705
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccggctgcggctgcgcgacg 313 |||||||||||||||||||| Sbjct: 257493 ccggctgcggctgcgcgacg 257512
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccggctgcggctgcgcgacg 313 |||||||||||||||||||| Sbjct: 305652 ccggctgcggctgcgcgacg 305671
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 agccgatggccgcggcgacc 165 |||||||||||||||||||| Sbjct: 62370 agccgatggccgcggcgacc 62351
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gccgatggccgcggcgacca 166 |||||||||||||||||||| Sbjct: 581978 gccgatggccgcggcgacca 581959
>gb|AC130527.4| Mus musculus BAC clone RP23-56C10 from chromosome 1, complete sequence Length = 233538 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gagaccaggctccggaaggt 218 |||||||||||||||||||| Sbjct: 107647 gagaccaggctccggaaggt 107628
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 8001272 gaggtgttcgaccgggaccg 8001253 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 7945488 gaggtgttcgaccgggaccg 7945507
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgccgacggcgagatcgtgc 286 |||||||||||||||||||| Sbjct: 2509740 cgccgacggcgagatcgtgc 2509759
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ccgacagcttcgtcacgtac 267 |||||||||||||||||||| Sbjct: 7319659 ccgacagcttcgtcacgtac 7319640 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 gccgacggcgagatcgtgctcgac 291 |||||||||||| ||||||||||| Sbjct: 740435 gccgacggcgaggtcgtgctcgac 740458
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 39469 gaggtgttcgaccgggaccg 39450
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 117631 gaggtgttcgaccgggaccg 117612 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 61847 gaggtgttcgaccgggaccg 61866
>ref|XM_565398.1| Anopheles gambiae str. PEST ENSANGP00000026033 (ENSANGG00000021971), partial mRNA Length = 1233 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 135 cctcgacctgcagccgatggccgcggcg 162 |||||||||||||| |||||||| |||| Sbjct: 426 cctcgacctgcagcagatggccgtggcg 453
>dbj|AK064151.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E05, full insert sequence Length = 1648 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gaggtgttcgaccgggaccg 101 |||||||||||||||||||| Sbjct: 1286 gaggtgttcgaccgggaccg 1305
>gb|AD000020.1|MSGY348 Mycobacterium tuberculosis sequence from clone y348 Length = 40056 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccggctgcggctgcgcgacg 313 |||||||||||||||||||| Sbjct: 22798 ccggctgcggctgcgcgacg 22817 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,053,356 Number of Sequences: 3902068 Number of extensions: 3053356 Number of successful extensions: 67798 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66472 Number of HSP's gapped (non-prelim): 1312 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
