ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UCRQ_YEAST (P08525) Ubiquinol-cytochrome c reductase complex ubi... 28 6.8
2MURE_LEIXX (Q6AE59) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 28 6.8
3GDF11_MOUSE (Q9Z1W4) Growth/differentiation factor 11 precursor ... 27 8.8

>UCRQ_YEAST (P08525) Ubiquinol-cytochrome c reductase complex|
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 11 kDa
           protein) (Complex III subunit VIII)
          Length = 94

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 74  YWWVNNPTLGEFCFTMIGRADIE 6
           YWW N     EF ++  GR ++E
Sbjct: 68  YWWKNGNEYNEFLYSKAGREELE 90



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>MURE_LEIXX (Q6AE59) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 514

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 158 RHRVLGFQPDQ*GKTNLSHDGL 93
           RHRV G + D  G TNLSHD L
Sbjct: 204 RHRVDGIEFDVAGFTNLSHDHL 225



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>GDF11_MOUSE (Q9Z1W4) Growth/differentiation factor 11 precursor (GDF-11) (Bone|
           morphogenetic protein 11)
          Length = 405

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 390 EAAEGRHLASSRTTRSDGDGGESAQRQAVQAP 295
           EAAEG   A++    + G GGE + R A  AP
Sbjct: 23  EAAEGPAAAAAAAAAAAGVGGERSSRPAPSAP 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,837,416
Number of Sequences: 219361
Number of extensions: 552327
Number of successful extensions: 1226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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