ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (P... 30 1.4
2ARLY_ANSAN (P33110) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 27 9.2

>UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (Perlecan|
           homolog) (Uncoordinated protein 52)
          Length = 3375

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 108 AGGGKDDELADLVRRIVDVLSRYSDRLPFDLDRQ 209
           +G G  D+ AD++ R  D+  +Y  R PF  DR+
Sbjct: 816 SGNGNSDQSADVILRGNDIALQYKHREPFYADRE 849



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>ARLY_ANSAN (P33110) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL) (Delta crystallin)
          Length = 466

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 120 KDDELADLVRRIVDVLSRYSDRL---PFDLDRQKLRSLTTLAAIAI 248
           +D E    V+R ++VL   S  L   P D+DR+ LRS    A+I++
Sbjct: 182 RDSERLGEVKRRINVLPLGSGALAGNPLDIDREMLRSELDFASISL 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,693,340
Number of Sequences: 219361
Number of extensions: 262630
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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