ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46c11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059832.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A09, full insert sequence Length = 1115 Score = 230 bits (116), Expect = 3e-57 Identities = 176/196 (89%) Strand = Plus / Plus Query: 170 ccgctactccgatcgcctccccttcgacctcgaccgccagaagcttcgctcgctaaccac 229 ||||||||||||||||||||| ||||||||||| |||||||| |||||||| | || || Sbjct: 140 ccgctactccgatcgcctcccgttcgacctcgatcgccagaaacttcgctcatttactac 199 Query: 230 acttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctctaga 289 |||||| |||||| | |||||| || | |||||||||||||||||||||||||||| ||| Sbjct: 200 acttgccgcaattacaatcacacttatctttgcctggaaactgttgagagctcctcaaga 259 Query: 290 gcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtagatc 349 |||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||||| Sbjct: 260 gcaacctcggaggccacgtagacgcgttgctccatcacctagcaacaccagcagtagatc 319 Query: 350 acggccaggtgctttg 365 |||||||||||||||| Sbjct: 320 acggccaggtgctttg 335
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 170 bits (86), Expect = 2e-39 Identities = 125/138 (90%) Strand = Plus / Plus Query: 228 acacttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctcta 287 |||||||| |||||| | |||||| || | |||||||||||||||||||||||||||| | Sbjct: 32034689 acacttgccgcaattacaatcacacttatctttgcctggaaactgttgagagctcctcaa 32034748 Query: 288 gagcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtaga 347 |||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||| Sbjct: 32034749 gagcaacctcggaggccacgtagacgcgttgctccatcacctagcaacaccagcagtaga 32034808 Query: 348 tcacggccaggtgctttg 365 |||||||||||||||||| Sbjct: 32034809 tcacggccaggtgctttg 32034826 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 |||||||| ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 32033543 gggggcgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 32033602 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 32033603 cgctactccgatcgcctcccgttcgacctcgatcgccag 32033641 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 5052495 cctctcccgctactccggtcgcctc 5052471 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 5043223 cctctcccgctactccggtcgcctc 5043199
>dbj|AK120653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157E15, full insert sequence Length = 1701 Score = 170 bits (86), Expect = 2e-39 Identities = 125/138 (90%) Strand = Plus / Plus Query: 228 acacttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctcta 287 |||||||| |||||| | |||||| || | |||||||||||||||||||||||||||| | Sbjct: 1404 acacttgccgcaattacaatcacacttatctttgcctggaaactgttgagagctcctcaa 1463 Query: 288 gagcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtaga 347 |||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||| Sbjct: 1464 gagcaacctcggaggccacgtagacgcgttgctccatcacctagcaacaccagcagtaga 1523 Query: 348 tcacggccaggtgctttg 365 |||||||||||||||||| Sbjct: 1524 tcacggccaggtgctttg 1541 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 |||||||| ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 258 gggggcgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 317 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 318 cgctactccgatcgcctcccgttcgacctcgatcgccag 356
>dbj|AK068625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K03, full insert sequence Length = 2268 Score = 170 bits (86), Expect = 2e-39 Identities = 125/138 (90%) Strand = Plus / Plus Query: 228 acacttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctcta 287 |||||||| |||||| | |||||| || | |||||||||||||||||||||||||||| | Sbjct: 1313 acacttgccgcaattacaatcacacttatctttgcctggaaactgttgagagctcctcaa 1372 Query: 288 gagcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtaga 347 |||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||| Sbjct: 1373 gagcaacctcggaggccacgtagacgcgttgctccatcacctagcaacaccagcagtaga 1432 Query: 348 tcacggccaggtgctttg 365 |||||||||||||||||| Sbjct: 1433 tcacggccaggtgctttg 1450 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 |||||||| ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 254 gggggcgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 313 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 314 cgctactccgatcgcctcccgttcgacctcgatcgccag 352
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 170 bits (86), Expect = 2e-39 Identities = 125/138 (90%) Strand = Plus / Plus Query: 228 acacttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctcta 287 |||||||| |||||| | |||||| || | |||||||||||||||||||||||||||| | Sbjct: 55396 acacttgccgcaattacaatcacacttatctttgcctggaaactgttgagagctcctcaa 55455 Query: 288 gagcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtaga 347 |||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||| Sbjct: 55456 gagcaacctcggaggccacgtagacgcgttgctccatcacctagcaacaccagcagtaga 55515 Query: 348 tcacggccaggtgctttg 365 |||||||||||||||||| Sbjct: 55516 tcacggccaggtgctttg 55533 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 |||||||| ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 54250 gggggcgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 54309 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 54310 cgctactccgatcgcctcccgttcgacctcgatcgccag 54348
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 155 bits (78), Expect = 1e-34 Identities = 123/138 (89%) Strand = Plus / Plus Query: 228 acacttgctgcaattgccatcacaattgtatttgcctggaaactgttgagagctcctcta 287 |||||||| |||||| | ||||| || | |||||||||||||||||||||||||||| | Sbjct: 18009 acacttgccgcaattacaatcacgcttatctttgcctggaaactgttgagagctcctcaa 18068 Query: 288 gagcaacctcggaggccacggagacgggatgctccatcttctagcaacacgagcagtaga 347 ||||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||| Sbjct: 18069 gagcaacctcggaggccacatagacgcgttgctccatcacctagcaacaccagcagtaga 18128 Query: 348 tcacggccaggtgctttg 365 |||||||||||||||||| Sbjct: 18129 tcacggccaggtgctttg 18146 Score = 109 bits (55), Expect = 7e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 ||||| || ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 16863 gggggtgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 16922 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 16923 cgctactccgatcgcctcccgttcgacctcgatcgccag 16961
>ref|XM_473989.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 513 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 111 gggggcggcaaggacgacgagctggccgatctggtgcgccgcatcgtcgacgtcctctcc 170 |||||||| ||||||||||||||||| ||||||||||| ||| | || |||| |||| || Sbjct: 52 gggggcgggaaggacgacgagctggctgatctggtgcggcgcctagtggacgccctcgcc 111 Query: 171 cgctactccgatcgcctccccttcgacctcgaccgccag 209 |||||||||||||||||||| ||||||||||| |||||| Sbjct: 112 cgctactccgatcgcctcccgttcgacctcgatcgccag 150
>ref|XM_450842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1543 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 61 cggcggcgatggcgtcggagtcgg 84 |||||||||||||||||||||||| Sbjct: 139 cggcggcgatggcgtcggagtcgg 116
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 61 cggcggcgatggcgtcggagtcgg 84 |||||||||||||||||||||||| Sbjct: 13124274 cggcggcgatggcgtcggagtcgg 13124297
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 61 cggcggcgatggcgtcggagtcgg 84 |||||||||||||||||||||||| Sbjct: 46364 cggcggcgatggcgtcggagtcgg 46387
>dbj|AK063271.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B11, full insert sequence Length = 1543 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 61 cggcggcgatggcgtcggagtcgg 84 |||||||||||||||||||||||| Sbjct: 139 cggcggcgatggcgtcggagtcgg 116
>gb|AY107690.1| Zea mays PCO082571 mRNA sequence Length = 577 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 55 tctcgtcggcggcgatggcgtcgg 78 |||||||||||||||||||||||| Sbjct: 130 tctcgtcggcggcgatggcgtcgg 107
>gb|BC066042.1| Mus musculus THAP domain containing 4, mRNA (cDNA clone MGC:90048 IMAGE:6413779), complete cds Length = 2134 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 96 gcggcggcgcgggccgggggcgg 118 ||||||||||||||||||||||| Sbjct: 31 gcggcggcgcgggccgggggcgg 9
>gb|DQ372711.1| Azoarcus communis strain MUL2G9 hypothetical proteins, phosphoribosylglycinamide formyltransferase, hypothetical protein, sigma-54 dependent transcriptional activator, acyl-CoA synthetase, acetone carboxylase gamma subunit, acetone carboxylase alpha subunit, acetone carboxylase beta subunit, catalase/peroxidase, putative SAM-dependent methyltransferase, putative Fe-S oxidoreductase, putative acyl dehydratase, hypothetical proteins, putative endonuclease, hypothetical protein, and putative integrase/recombinase genes, complete cds; class 1 integron, complete sequence; putative transposase and DNA gyrase subunit B genes, complete cds; and DNA polymerase subunit B gene, partial cds Length = 36164 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 55 tctcgtcggcggcgatggcgtcg 77 ||||||||||||||||||||||| Sbjct: 33155 tctcgtcggcggcgatggcgtcg 33177
>gb|AC162891.6| Mus musculus chromosome 1, clone RP24-263F3, complete sequence Length = 148545 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 96 gcggcggcgcgggccgggggcgg 118 ||||||||||||||||||||||| Sbjct: 69317 gcggcggcgcgggccgggggcgg 69295
>gb|AC068987.38| Homo sapiens 12 BAC RP11-923I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75663 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcg 117 ||||||||||||||||||||||| Sbjct: 25274 ggcggcggcgcgggccgggggcg 25252
>ref|NM_015650.2| Homo sapiens TNF receptor-associated factor 3 interacting protein 1 (TRAF3IP1), mRNA Length = 2568 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccgggggcggc 119 ||||||||||||||||||| |||||| Sbjct: 124 cggcggcggcgcgggccggcggcggc 149
>gb|AF242456.1| Homo sapiens interleukin 13 receptor alpha 1-binding protein-1 mRNA, complete cds Length = 2568 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccgggggcggc 119 ||||||||||||||||||| |||||| Sbjct: 124 cggcggcggcgcgggccggcggcggc 149
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence Length = 113210 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 236 tgcaattgccatcacaattgtatttg 261 |||||||| ||||||||||||||||| Sbjct: 3738 tgcaattgacatcacaattgtatttg 3763
>emb|BX571859.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 1/17 Length = 349483 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 tgcctggaaactgttgagagct 281 |||||||||||||||||||||| Sbjct: 106444 tgcctggaaactgttgagagct 106465
>ref|NM_205202.1| Gallus gallus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 (B4GALT1), mRNA Length = 2279 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 88 cgtccccggcggcggcgcgggccggg 113 ||||||||||||||||||||| |||| Sbjct: 7 cgtccccggcggcggcgcggggcggg 32
>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence Length = 107180 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 236 tgcaattgccatcacaattgtatttg 261 |||||||| ||||||||||||||||| Sbjct: 96742 tgcaattgacatcacaattgtatttg 96767
>gb|U19890.1|GGU19890 Gallus gallus beta-1,4-galactosyltransferase (CKI) mRNA, complete cds Length = 2279 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 88 cgtccccggcggcggcgcgggccggg 113 ||||||||||||||||||||| |||| Sbjct: 7 cgtccccggcggcggcgcggggcggg 32
>ref|NM_195831.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.15), mRNA Length = 645 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 350 tggtgcgccgcctcgtcgccgtcctctcc 378
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 ggcggcgcgggccgggggcgg 118 ||||||||||||||||||||| Sbjct: 35227 ggcggcgcgggccgggggcgg 35207
>gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosome 12, complete sequence Length = 187877 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccggggg 115 ||||||||||||||||||||| Sbjct: 87554 ggcggcggcgcgggccggggg 87534
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 28768 cctctcccgctactccggtcgcctc 28744 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 19496 cctctcccgctactccggtcgcctc 19472
>gb|BC065576.1| Rattus norvegicus vesicle-associated membrane protein, associated protein B and C, mRNA (cDNA clone MGC:72459 IMAGE:5598396), complete cds Length = 2173 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcggc 119 ||||||||||||||| ||||||||| Sbjct: 169 ggcggcggcgcgggcggggggcggc 145
>gb|AE005950.1| Caulobacter crescentus CB15 section 276 of 359 of the complete genome Length = 12754 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 agctggccgatctggtgcgcc 150 ||||||||||||||||||||| Sbjct: 7293 agctggccgatctggtgcgcc 7313
>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence Length = 161479 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 58669 tggtgcgccgcctcgtcgccgtcctctcc 58641
>gb|AC018943.10| Homo sapiens, clone RP11-24D15, complete sequence Length = 152779 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggggcggc 119 |||||||| |||||||||||||||| Sbjct: 134119 ggcggcggggcgggccgggggcggc 134143
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 9307748 tggtgcgccgcctcgtcgccgtcctctcc 9307776 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 4017224 cggcggcggcgcgggccggg 4017243
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 14438037 cctctcccgctactccggtcgcctc 14438061 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 14431685 cctctcccgctactccggtcgcctc 14431709 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 14425333 cctctcccgctactccggtcgcctc 14425357 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggcggcaaggacgacgagct 133 |||||||||||||||||||| Sbjct: 18966669 ggcggcaaggacgacgagct 18966688
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 5876 cctctcccgctactccggtcgcctc 5900 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 27725349 cggcggcggcgcgggccggg 27725368 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 24022008 ggcggcgatggcgtcggagt 24021989
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 15667450 cctctcccgctactccggtcgcctc 15667426 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 29553960 ggcggcgatggcgtcggagt 29553979 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 cggcggcgcgggccgggggcggcaagga 124 |||||||||||| || |||||||||||| Sbjct: 19188220 cggcggcgcggggcgagggcggcaagga 19188247
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 25591 tggtgcgccgcctcgtcgccgtcctctcc 25619
>ref|NM_021847.2| Rattus norvegicus vesicle-associated membrane protein, associated protein B and C (Vapb), mRNA Length = 2173 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcggc 119 ||||||||||||||| ||||||||| Sbjct: 169 ggcggcggcgcgggcggggggcggc 145
>gb|AC022188.13| Homo sapiens chromosome 15, clone RP11-8P11, complete sequence Length = 140176 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcggc 119 |||||||| |||||||||||||||| Sbjct: 67987 ggcggcggggcgggccgggggcggc 67963
>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence Length = 191996 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 ccccggcggcggcgcgggccg 111 ||||||||||||||||||||| Sbjct: 164548 ccccggcggcggcgcgggccg 164568
>dbj|AP006751.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1460A05 Length = 143371 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 5876 cctctcccgctactccggtcgcctc 5900
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 105347 cctctcccgctactccggtcgcctc 105323
>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01 Length = 140261 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 32905 cctctcccgctactccggtcgcctc 32929 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 26553 cctctcccgctactccggtcgcctc 26577 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 20201 cctctcccgctactccggtcgcctc 20225
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0670E08 Length = 133106 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 82320 cctctcccgctactccggtcgcctc 82344 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 75968 cctctcccgctactccggtcgcctc 75992 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cctctcccgctactccgatcgcctc 188 ||||||||||||||||| ||||||| Sbjct: 69616 cctctcccgctactccggtcgcctc 69640
>dbj|AK062808.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D08, full insert sequence Length = 643 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 130 tggtgcgccgcctcgtcgccgtcctctcc 158
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gcggcggcgcgggccgggggc 116 ||||||||||||||||||||| Sbjct: 1678702 gcggcggcgcgggccgggggc 1678682
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgacgtcctctcc 170 ||||||||||| |||||| |||||||||| Sbjct: 9312887 tggtgcgccgcctcgtcgccgtcctctcc 9312915 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 4018045 cggcggcggcgcgggccggg 4018064
>dbj|AB019147.1| Mus musculus gene for zinc finger transcription factor Sp4, partial cds Length = 4515 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccggggg 115 ||||||||||||||||||||| Sbjct: 3702 ggcggcggcgcgggccggggg 3682
>dbj|AB044709.1| Gryllus bimaculatus mRNA for hedgehog protein, partial cds Length = 2963 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 ccccggcggcggcgcgggccgggggcggc 119 |||||| ||||||||| |||||||||||| Sbjct: 1190 ccccgggggcggcgcgcgccgggggcggc 1162
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 gcggcggcgcgggccgggggcggc 119 ||||||| |||||||||||||||| Sbjct: 3365893 gcggcggggcgggccgggggcggc 3365870 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggg 114 |||||||||||||||||||| Sbjct: 1754452 ggcggcggcgcgggccgggg 1754471
>ref|XM_482244.1| Oryza sativa (japonica cultivar-group), mRNA Length = 453 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggcggcaaggacgacgagct 133 |||||||||||||||||||| Sbjct: 162 ggcggcaaggacgacgagct 181
>ref|XM_463959.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1015 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 218 tccccggcggcggcgcgggc 199
>ref|XM_506700.1| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.6 mRNA Length = 1096 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 218 tccccggcggcggcgcgggc 199
>ref|NM_191707.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3102 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 252 ggcggcgatggcgtcggagt 271
>ref|NM_186777.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cgtcggcggcgatggcgtcg 77 |||||||||||||||||||| Sbjct: 458 cgtcggcggcgatggcgtcg 477
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||| ||||||||||||| Sbjct: 1166601 ggcggcggcgggggccgggggcgg 1166578
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 2606 gcggcgcgggccgggggcgg 2625
>ref|XM_585626.2| PREDICTED: Bos taurus similar to basic helix-loop-helix domain containing, class B, 4 (LOC539207), mRNA Length = 669 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggg 114 |||||||||||||||||||| Sbjct: 233 ggcggcggcgcgggccgggg 252
>ref|XM_610315.2| PREDICTED: Bos taurus hypothetical LOC531813 (LOC531813), mRNA Length = 2977 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cggcggcggcgcgggccgggggcg 117 ||||||||||||||| |||||||| Sbjct: 188 cggcggcggcgcggggcgggggcg 165
>gb|AC145984.3| Pan troglodytes BAC clone RP43-17F10 from 7, complete sequence Length = 186825 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||||||| ||||||||| Sbjct: 16122 ggcggcggcgcgggtcgggggcgg 16145
>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence Length = 207264 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccgggggcg 117 ||||||||||| |||||||||||| Sbjct: 145472 cggcggcggcgggggccgggggcg 145495
>gb|AY564222.1| Homo sapiens parkin (PARK2) gene, PARK2-t/c allele, exon 1 and partial sequence Length = 312 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cggcggcgcgggccgggggcggca 120 |||||||||||||||||| ||||| Sbjct: 255 cggcggcgcgggccggggacggca 232
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tctcgtcggcggcgatggcg 74 |||||||||||||||||||| Sbjct: 3353130 tctcgtcggcggcgatggcg 3353149
>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 133233 gcggcgcgggccgggggcgg 133252
>gb|AY495085.1| Oryza sativa (indica cultivar-group) glycine dehydrogenase P protein (GDC) mRNA, complete cds Length = 2679 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 246 ggcggcgatggcgtcggagt 265
>ref|XM_994384.1| PREDICTED: Mus musculus similar to Actin, cytoplasmic 2 (Gamma-actin) (LOC672560), mRNA Length = 2442 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||||||||| ||||||| Sbjct: 372 ggcggcggcgcgggccaggggcgg 395
>ref|XM_847119.1| PREDICTED: Canis familiaris similar to Oligodendrocyte transcription factor 1 (Oligo1) (LOC487736), mRNA Length = 990 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 863 tccccggcggcggcgcgggc 882
>gb|AC004595.1| Homo sapiens BAC clone CTB-23M10 from 7, complete sequence Length = 136170 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||||||| ||||||||| Sbjct: 18677 ggcggcggcgcgggtcgggggcgg 18654
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence Length = 180378 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ttgccatcacaattgtattt 260 |||||||||||||||||||| Sbjct: 136942 ttgccatcacaattgtattt 136961
>ref|XM_572203.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH00090) partial mRNA Length = 5123 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||| ||||||||||||| Sbjct: 721 ggcggcggcgggggccgggggcgg 744
>gb|AC122367.4| Mus musculus BAC clone RP23-449L24 from chromosome 12, complete sequence Length = 200004 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ccggcggcggcgcgggccgggggc 116 |||||||||||||||| ||||||| Sbjct: 59556 ccggcggcggcgcgggacgggggc 59533
>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete sequence Length = 197576 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 167876 gcggcgcgggccgggggcgg 167857
>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland Research Institute) complete sequence Length = 227741 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggcggcgcgggccgggggc 116 |||||||||||||||||||| Sbjct: 21399 cggcggcgcgggccgggggc 21380
>gb|AY346327.1| Oryza sativa (japonica cultivar-group) glycine dehydrogenase P protein mRNA, complete cds Length = 3102 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 252 ggcggcgatggcgtcggagt 271
>emb|AL603788.4| Human DNA sequence from clone RP11-211O7 on chromosome 6 Contains the 5' end of the PARK2 gene for Parkinson disease (autosomal recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP) and the 5' end of the gene for a novel protein (FLJ32724). Contains a CpG island, complete sequence Length = 29881 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 cggcggcgcgggccgggggcggca 120 |||||||||||||||||| ||||| Sbjct: 513 cggcggcgcgggccggggacggca 536
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 gatctggtgcgccgcatcgtcgac 161 ||||||||||||||| |||||||| Sbjct: 1664393 gatctggtgcgccgcctcgtcgac 1664416
>emb|AL355296.12| Human DNA sequence from clone RP11-510H23 on chromosome 6 Contains parts of 3 novel genes and a CpG island, complete sequence Length = 159110 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 gcggcggcgcgggccgggggcggc 119 |||||||||||||||| ||||||| Sbjct: 95003 gcggcggcgcgggccgcgggcggc 95026
>emb|AL161772.17| Human DNA sequence from clone RP11-172H24 on chromosome 13 Contains the 3' end of the gene for polycystic kidney disease, autosomal recessive (Probe hTg737) (TG737), a novel pseudogene (FLJ124251 and FLJ14793), the 5' end of the IL17D gene for interleukin 17D and a CpG island, complete sequence Length = 125579 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccgggggcg 117 ||||||||||| |||||||||||| Sbjct: 116269 cggcggcggcgggggccgggggcg 116292
>emb|AL138916.14| Human DNA sequence from clone RP11-497D6 on chromosome 6q24.2-25.2 Contains the 3' end of the C6orf103 gene for chromosome 6 open reading frame 103, a novel pseudogene, a novel gene and the 3' end of a novel gene, complete sequence Length = 183115 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ttgccatcacaattgtattt 260 |||||||||||||||||||| Sbjct: 54179 ttgccatcacaattgtattt 54198
>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains three novel genes, the OTX3 gene for orthodenticle homolog 3 (Drosophila) and a CpG island, complete sequence Length = 105345 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggg 114 |||||||||||||||||||| Sbjct: 39343 ggcggcggcgcgggccgggg 39324
>gb|AC012180.6| Homo sapiens chromosome 16 clone RP11-31I10, complete sequence Length = 69437 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 8490 gcggcgcgggccgggggcgg 8471
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tctcgtcggcggcgatggcg 74 |||||||||||||||||||| Sbjct: 76084 tctcgtcggcggcgatggcg 76065
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccccggcggcggcgcgggcc 110 |||||||||||||||||||| Sbjct: 284471 ccccggcggcggcgcgggcc 284490
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 125 cgacgagctggccgatctggtgcgccgcatcg 156 ||||||||||||||| |||||||| |||||| Sbjct: 301978 cgacgagctggccgacgtggtgcgcggcatcg 301947
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccccggcggcggcgcgggcc 110 |||||||||||||||||||| Sbjct: 8188 ccccggcggcggcgcgggcc 8207
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 125 cgacgagctggccgatctggtgcgccgcatcg 156 ||||||||||||||| |||||||| |||||| Sbjct: 66646 cgacgagctggccgacgtggtgcgcggcatcg 66615
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ccccggcggcggcgcgggcc 110 |||||||||||||||||||| Sbjct: 319262 ccccggcggcggcgcgggcc 319243
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 gatctggtgcgccgcatcgtcgac 161 |||||||||||| ||||||||||| Sbjct: 122144 gatctggtgcgcggcatcgtcgac 122167
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cggcgcgggccgggggcggc 119 |||||||||||||||||||| Sbjct: 26385 cggcgcgggccgggggcggc 26366
>emb|AL031718.11|HS371H6 Human DNA sequence from clone LA16-371H6 on chromosome 16 Contains part of the gene for KIAA0516 protein, part of a gene similar to NDP kinase, ESTs, an STS and 2 CpG Islands, complete sequence Length = 20612 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 5788 gcggcgcgggccgggggcgg 5769
>gb|AE006639.1| Homo sapiens 16p13.3 sequence section 7 of 8 Length = 270150 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 162866 gcggcgcgggccgggggcgg 162847
>gb|AY117133.1| Saccharopolyspora erythraea methylmalonyl-CoA mutase operon, partial sequence Length = 5894 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggtgcgccgcatcgtcgacg 162 |||||||||||||||||||| Sbjct: 5292 ggtgcgccgcatcgtcgacg 5311
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggg 114 |||||||||||||||||||| Sbjct: 4828980 ggcggcggcgcgggccgggg 4828961
>dbj|AB108321.1| Phleum pratense DNA, SSR, microsatellite B02-F09 Length = 451 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 gtctcgtcggcggcgatggcgtcg 77 ||||||||||||||||||| |||| Sbjct: 98 gtctcgtcggcggcgatggtgtcg 121
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0089D15, from Chromosome 10, complete sequence Length = 164679 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 14053 cggcggcggcgcgggccggg 14072
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ccggcggcggcgcgggccgggggc 116 ||||||||||||||| |||||||| Sbjct: 470755 ccggcggcggcgcggcccgggggc 470732
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccggcggcggcgcgggccgg 112 |||||||||||||||||||| Sbjct: 1289822 ccggcggcggcgcgggccgg 1289841 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tggtgcgccgcatcgtcgac 161 |||||||||||||||||||| Sbjct: 305287 tggtgcgccgcatcgtcgac 305306
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 1477776 tccccggcggcggcgcgggc 1477795
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgtcggcggcgatggcgtcg 77 |||||||||||||||||||| Sbjct: 7818272 cgtcggcggcgatggcgtcg 7818253
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tctcgtcggcggcgatggcg 74 |||||||||||||||||||| Sbjct: 3353241 tctcgtcggcggcgatggcg 3353260
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 1344894 tccccggcggcggcgcgggc 1344875
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 cggcggcgcgggccgggggcggcaagga 124 |||||||||||| || |||||||||||| Sbjct: 153637 cggcggcgcggggcgagggcggcaagga 153664
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1619_F12 Length = 133028 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 cggcggcgcgggccgggggcggcaagga 124 |||||||||||| || |||||||||||| Sbjct: 7841 cggcggcgcggggcgagggcggcaagga 7868
>gb|AC073046.7| Homo sapiens BAC clone RP11-51I5 from 2, complete sequence Length = 173658 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 165188 cggcggcggcgcgggccggg 165207
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 23780 ggcggcgatggcgtcggagt 23799
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 120234 ggcggcgatggcgtcggagt 120253
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggcggcaaggacgacgagct 133 |||||||||||||||||||| Sbjct: 51589 ggcggcaaggacgacgagct 51608
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 26166 tccccggcggcggcgcgggc 26147
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 74604 cggcggcggcgcgggccggg 74623
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 27858 cggcggcggcgcgggccggg 27877
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggcggcgatggcgtcggagt 81 |||||||||||||||||||| Sbjct: 31701 ggcggcgatggcgtcggagt 31682
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0523A04 Length = 149049 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgtcggcggcgatggcgtcg 77 |||||||||||||||||||| Sbjct: 67270 cgtcggcggcgatggcgtcg 67251
>dbj|AK121533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030P21, full insert sequence Length = 817 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tctcgtcggcggcgatggcg 74 |||||||||||||||||||| Sbjct: 82 tctcgtcggcggcgatggcg 101
>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05, complete sequence Length = 171022 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 47630 cggcggcggcgcgggccggg 47611
>dbj|AK111124.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C05, full insert sequence Length = 486 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 190 cggcggcggcgcgggccggg 171
>emb|AJ336368.1|HSA336368 Homo sapiens genomic sequence surrounding NotI site, clone NL6-IJ10R Length = 403 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 20 cggcggcggcgcgggccggg 39
>emb|AJ335204.1|HSA335204 Homo sapiens genomic sequence surrounding NotI site, clone NL6-AM11C Length = 707 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 20 cggcggcggcgcgggccggg 39
>dbj|AK101502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E02, full insert sequence Length = 1014 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 217 tccccggcggcggcgcgggc 198
>dbj|AK071006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078I12, full insert sequence Length = 1096 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 218 tccccggcggcggcgcgggc 199
>dbj|AK061605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C05, full insert sequence Length = 785 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tctcgtcggcggcgatggcg 74 |||||||||||||||||||| Sbjct: 77 tctcgtcggcggcgatggcg 96
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ccgtctcgtcggcggcgatg 71 |||||||||||||||||||| Sbjct: 525496 ccgtctcgtcggcggcgatg 525477
>gb|AE001826.1| Deinococcus radiodurans R1 plasmid MP1, complete sequence Length = 177466 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggg 114 |||||||||||||||||||| Sbjct: 111939 ggcggcggcgcgggccgggg 111920
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tccccggcggcggcgcgggc 109 |||||||||||||||||||| Sbjct: 39085 tccccggcggcggcgcgggc 39066
>gb|U80813.1|HSU80813 Human nucleoside diphosphate kinase homolog (DR-nm23) gene, complete sequence Length = 3100 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcggcgcgggccgggggcgg 118 |||||||||||||||||||| Sbjct: 1743 gcggcgcgggccgggggcgg 1762
>gb|U18765.1|CRU18765 Chlamydomonas reinhardtii isocitrate lyase mRNA, complete cds Length = 1950 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgcgggccggg 113 |||||||||||||||||||| Sbjct: 1346 cggcggcggcgcgggccggg 1365
>gb|U08850.1|RSU08850 Rhodococcus sp. IGTS8 sox dibenzothiophene desulfurization operon (soxA, soxB, and soxC) genes, complete cds, and IS1166 transposase genes, complete cds Length = 9762 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cgcccgtctcgtcggcggcg 68 |||||||||||||||||||| Sbjct: 7294 cgcccgtctcgtcggcggcg 7275
>emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chromosome 11, complete sequence Length = 207991 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||||||||| ||||||| Sbjct: 10479 ggcggcggcgcgggccaggggcgg 10456
>gb|L21996.1|MUSGA Mouse cytoplasmic gamma-actin gene, exons 1-6 Length = 4609 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ggcggcggcgcgggccgggggcgg 118 |||||||||||||||| ||||||| Sbjct: 783 ggcggcggcgcgggccaggggcgg 806
>dbj|AP001576.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1F5 Length = 105199 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 cggcggcgcgggccgggggcggca 120 |||||||||||||||||| ||||| Sbjct: 103712 cggcggcgcgggccggggacggca 103735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,722,722 Number of Sequences: 3902068 Number of extensions: 2722722 Number of successful extensions: 75657 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72343 Number of HSP's gapped (non-prelim): 3314 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
