ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast46b05 |
|---|---|
| Clone Library Name | barley_pub |
>SIP11_ARATH (Q9M8W5) Probable aquaporin SIP1.1 (Small basic intrinsic protein| 1.1) Length = 240 Score = 107 bits (266), Expect = 2e-23 Identities = 59/137 (43%), Positives = 75/137 (54%) Frame = +2 Query: 86 VTFLWVLCVSTLGASTAAVTTYLSLHEGIHYXXXXXXXXXXXXXXXXXXXXXXXGGASFN 265 +TF WV+ +T G TAA+ +S + G ASFN Sbjct: 14 MTFSWVVLSATFGIQTAAI---ISAGDFQAITWAPLVILTSLIFVYVSIFTVIFGSASFN 70 Query: 266 PTGVAAFYAAGLTSPSLFSIALRLPXXXXXXXXXXXXISELMPEQYKHMLGGPSLKVDPH 445 PTG AAFY AG+ +LFS+A+RLP I E +PE+YKHM+GGPSL+VD H Sbjct: 71 PTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSLQVDVH 130 Query: 446 TGAAAEGVLTFVITFAV 496 TGA AE +L+F ITFAV Sbjct: 131 TGAIAETILSFGITFAV 147
>SIP12_ARATH (Q9FK43) Probable aquaporin SIP1.2 (Small basic intrinsic protein| 1.2) Length = 243 Score = 97.8 bits (242), Expect = 1e-20 Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Frame = +2 Query: 86 VTFLWVLCVSTLGASTAAVTTYLSLHEGIHYXXXXXXXXXXXXXXXXXXXXXXXGGASFN 265 +TFLWV+ +T G TAA+ + + H GGASFN Sbjct: 13 ITFLWVILSATFGIQTAAIVSAVGFHGITWAPLVISTLVVFVSISIFTVIGNVLGGASFN 72 Query: 266 PTGVAAFYAAGLTSPSLFSIALRLPXXXXXXXXXXXXISELMPEQYKHMLGG-PSLKVDP 442 P G AAFY AG++S SLFS+A+R P I E++PE+YK +GG PSL+ Sbjct: 73 PCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKYKTRIGGKPSLQFGA 132 Query: 443 HTGAAAEGVLTFVITFAV 496 H GA +E VL+F +TF V Sbjct: 133 HNGAISEVVLSFSVTFLV 150
>SIP21_ARATH (Q9M1K3) Probable aquaporin SIP2.1 (Small basic intrinsic protein| 2.1) Length = 237 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/78 (34%), Positives = 35/78 (44%) Frame = +2 Query: 251 GASFNPTGVAAFYAAGLTSPSLFSIALRLPXXXXXXXXXXXXISELMPEQYKHMLGGPSL 430 G +NP A +G S +FS+ +R+P I + PE K GP L Sbjct: 65 GGLYNPLTALAAGVSGGFSSFIFSVFVRIPVEVIGSILAVKHIIHVFPEIGK----GPKL 120 Query: 431 KVDPHTGAAAEGVLTFVI 484 V H GA EG+LTF I Sbjct: 121 NVAIHHGALTEGILTFFI 138
>CEA6_ECOLI (P17999) Colicin-E6 (EC 3.1.-.-) (Ribonuclease)| Length = 551 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 496 DGKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGG 347 DG G +P+GGG+G GIH GS GH G G ++ G G Sbjct: 35 DGSGWSSENNPWGGGSGSGIHWGGGS--------GHGNGGGNGNSGGGSG 76
>CEA3_ECOLI (P00646) Colicin-E3 (EC 3.1.-.-) (Colicin-E3 A chain)| (Ribonuclease) Length = 551 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 496 DGKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGG 347 DG G +P+GGG+G GIH GS GH G G ++ G G Sbjct: 35 DGSGWSSENNPWGGGSGSGIHWGGGS--------GHGNGGGNGNSGGGSG 76
>CEA2_ECOLI (P04419) Colicin-E2 (EC 3.1.-.-)| Length = 581 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 496 DGKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGG 347 DG G +P+GGG+G GIH GS GH G G ++ G G Sbjct: 35 DGSGWSSENNPWGGGSGSGIHWGGGS--------GHGNGGGNGNSGGGSG 76
>CEA7_ECOLI (Q47112) Colicin-E7 (EC 3.1.-.-)| Length = 576 Score = 33.9 bits (76), Expect = 0.25 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -3 Query: 496 DGKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHG 356 DG G +P+GGG+G G+H GS GH G G S++ G Sbjct: 35 DGSGWSSENNPWGGGSGSGVHWGGGS--------GHGNGGGNSNSGG 73
>CEA9_ECOLI (P09883) Colicin-E9 (EC 3.1.-.-)| Length = 582 Score = 32.7 bits (73), Expect = 0.56 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 496 DGKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQS-SAHGSGG 347 DG G +P+GGG+G GIH GS G+ G+G S G+GG Sbjct: 35 DGSGWSSENNPWGGGSGSGIHWGGGSGR------GNGGGNGNSGGGSGTGG 79
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.3 bits (72), Expect = 0.73 Identities = 17/51 (33%), Positives = 20/51 (39%) Frame = -3 Query: 493 GKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGGLR 341 G+ G + G G G S+EH H G G SS HG G R Sbjct: 447 GRSSSSGPYVSGSGYSSGFGHHESSSEHSSGYTQHGSGSGHSSGHGQHGSR 497
>NIFS_RHISN (P55690) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase| metalloclusters biosynthesis protein nifS) Length = 387 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -3 Query: 469 HPFGGGAGVG-IHLERGSAEHVLVLLGHQLGDGQSSAHGSGGL 344 H F G GVG ++++RG H L+ GHQ D ++ + G+ Sbjct: 202 HKFHGPKGVGALYIKRGVPFHALIKGGHQERDRRAGTENTPGI 244
>KCNC4_HUMAN (Q03721) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (KSHIIIC) Length = 635 Score = 29.6 bits (65), Expect = 4.7 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = -3 Query: 472 EHPFGGGAGVGIHLERGSAEHVLVL--LG-HQLGDGQSSAHGSGGLR 341 E P GGG+G G E G E L L LG H+ G G + GSGG R Sbjct: 162 ESPDGGGSGAGPSDEAGDDERELALQRLGPHEGGAGHGA--GSGGCR 206
>KCNC4_RAT (Q63734) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (Raw3) Length = 625 Score = 29.3 bits (64), Expect = 6.2 Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = -3 Query: 472 EHPFGGGAGVGIHLERGSAEHVLVL--LG-HQLGDGQSSAHGSGGLR 341 E P GGG G G E G E L L LG H+ G G + GSGG R Sbjct: 163 ESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGSGPGA--GSGGCR 207
>CU22_TENMO (P26968) Adult-specific cuticular protein ACP-22 precursor| Length = 199 Score = 29.3 bits (64), Expect = 6.2 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = -3 Query: 490 KGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGG 347 +G + G H +GGG G G E G EH L G +LG G G GG Sbjct: 54 RGIEIGRH-YGGGGGGGGEGEEGR-EHELRGGGLELGGGGGGGGGGGG 99
>GRP1_PETHY (P09789) Glycine-rich cell wall structural protein 1 precursor| Length = 384 Score = 29.3 bits (64), Expect = 6.2 Identities = 19/49 (38%), Positives = 21/49 (42%) Frame = -3 Query: 493 GKGDDEGEHPFGGGAGVGIHLERGSAEHVLVLLGHQLGDGQSSAHGSGG 347 G G G H G G GVGI + G GH +G G S G GG Sbjct: 337 GGGGIGGGHGGGFGVGVGIGIGVGVGAGA----GHGVGVGSGSGSGGGG 381
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 29.3 bits (64), Expect = 6.2 Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = -3 Query: 472 EHPFGGGAGVGIHLERGSAEHVLVL--LG-HQLGDGQSSAHGSGGLR 341 E P GGG G G E G E L L LG H+ G G + GSGG R Sbjct: 166 ESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGSGPGA--GSGGCR 210
>GLPD_SYNY3 (P74257) Glycerol-3-phosphate dehydrogenase (EC 1.1.99.5)| Length = 553 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 442 GIHLERGSAEHVLVLLGHQLGDGQSSAHGS 353 G HLER S +H+ L G + GD + HG+ Sbjct: 432 GNHLERHSIQHLFCLYGARAGDILALVHGA 461
>GLYA_BACHD (Q9K6G4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 28.9 bits (63), Expect = 8.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 377 ISELMPEQYKHMLGGPSLKVDPHTGAAAEGVLTFVI 484 + +L ++ K + GG + V PH+GA A + F I Sbjct: 70 VEDLARDRAKEIFGGEHVNVQPHSGAQANMAVYFTI 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.127 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,023,565 Number of Sequences: 219361 Number of extensions: 488050 Number of successful extensions: 2301 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2289 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
