| Clone Name | bast46b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full insert sequence Length = 3673 Score = 345 bits (174), Expect = 7e-92 Identities = 362/422 (85%), Gaps = 2/422 (0%) Strand = Plus / Plus Query: 7 aatctcgaaggctgcaatactcggcattgcgctgggtgggcttgttatccttctgatgat 66 |||||| |||||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 2093 aatctcaaaggctgcaatacttggaattgccgtgggtgggcttgttatcctcctgatgat 2152 Query: 67 tttggtagctgtatgcaggccgcacagccctcctgttttcaaagatgtctctgttagcaa 126 || ||||| || |||||||| || || || ||||||||||||||||||||||||||||| Sbjct: 2153 cttagtagcggtctgcaggcctcatagtccacctgttttcaaagatgtctctgttagcaa 2212 Query: 127 accagtgagcaatg-tccccccaagctagtgatacttaatatgaacatggccctccatgt 185 |||||||||||||| |||||||||||| || || ||| |||||||| | |||| | ||| Sbjct: 2213 accagtgagcaatgttccccccaagctggttatccttcatatgaacctttcccttcttgt 2272 Query: 186 atatgaagacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatgg 245 ||| || || ||||||| ||||||||| ||| |||||||||| |||||||||||||| || Sbjct: 2273 atacgaggatataatgacgatgactgaaaacctgagtgagaagtacatcattgggtacgg 2332 Query: 246 ggcatcaagcactgtttacaaatgtgttttgaagaattgcagaccggtggcaatcaaaaa 305 ||||| ||||| | ||| |||||||||| |||||| ||| ||| |||||| | ||||| Sbjct: 2333 agcatccagcac-ggttataaatgtgtttcgaagaaccgcaaaccagtggcagtaaaaaa 2391 Query: 306 gctgtatgcccagtacccgcaaagcctgaaggaatttcaaactgagcttgagactgtcgg 365 ||| |||||||| || || || ||| | ||||||||| ||||||||||||||||||| || Sbjct: 2392 gctatatgcccactatccacagagcttcaaggaatttgaaactgagcttgagactgttgg 2451 Query: 366 cagtatcaaacaccggaatttagtgagccttcaaggatactccctatcacctgttggaaa 425 || ||||||||||||||| |||| || ||||||||||| |||||||| ||||||||||| Sbjct: 2452 tagcatcaaacaccggaatctagtcagtcttcaaggatattccctatctcctgttggaaa 2511 Query: 426 tc 427 || Sbjct: 2512 tc 2513
>gb|AY106598.1| Zea mays PCO069596 mRNA sequence Length = 1273 Score = 327 bits (165), Expect = 2e-86 Identities = 335/388 (86%), Gaps = 4/388 (1%) Strand = Plus / Plus Query: 39 tgggtgggcttgttatccttctgatgattttggtagctgtatgcaggccgcacagccctc 98 ||||||| ||||||||||| |||||||| || ||||||||||||||||| ||| || | Sbjct: 98 tgggtggacttgttatcctcctgatgatcttagtagctgtatgcaggccacaccatccac 157 Query: 99 ctgttttcaaagatgtctctgttagcaaaccagtgagcaatg-tccccccaagctagtga 157 ||| ||| ||||||| | |||| ||||| ||||||||||||| ||| |||||||| |||| Sbjct: 158 ctgcttttaaagatgccactgtaagcaagccagtgagcaatggtccacccaagctggtga 217 Query: 158 tacttaatatgaacatggccctccatgtatatgaagacataatgaggatgactgagaact 217 | ||| ||||||||||||| || ||||| | ||| || |||||||||||||||||||||| Sbjct: 218 tccttcatatgaacatggctcttcatgtctttgatgatataatgaggatgactgagaact 277 Query: 218 tgagtgagaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttga 277 |||||||||||||||||||||| || ||||||||||| || ||||| ||||||||| | | Sbjct: 278 tgagtgagaaatacatcattggatacggggcatcaagtacagtttataaatgtgttctaa 337 Query: 278 agaattgcagaccggtggcaatcaaaaagctgtatgcccagtaccc-gcaaagcctgaag 336 ||||||||| ||| |||||||| ||||||||||||||||| ||||| ||| ||||| ||| Sbjct: 338 agaattgcaaaccagtggcaataaaaaagctgtatgcccactaccctgcagagccttaag 397 Query: 337 gaatttcaaactgagcttgagactgtcggcagtatcaaacaccggaatttagtgagcctt 396 |||||| |||||||||| |||||||| || || ||||||||||||||| |||| |||||| Sbjct: 398 gaatttgaaactgagctcgagactgttggtagcatcaaacaccggaatctagtcagcctt 457 Query: 397 --caaggatactccctatcacctgttgg 422 ||||| ||||| | ||||||||||| Sbjct: 458 gccaagggtactcgttgtcacctgttgg 485
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 315 bits (159), Expect = 6e-83 Identities = 262/295 (88%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 129 cagtgagcaatg-tccccccaagctagtgatacttaatatgaacatggccctccatgtat 187 ||||||| |||| |||||||||||| ||||| ||| |||||||||||||||| ||||||| Sbjct: 3408 cagtgagaaatgctccccccaagctggtgatccttcatatgaacatggcccttcatgtat 3349 Query: 188 atgaagacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatgggg 247 | || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 3348 acgatgacataatgaggatgactgagaacttgagtgagaaatacatcattggatacgggg 3289 Query: 248 catcaagcactgtttacaaatgtgttttgaagaattgcagaccggtggcaatcaaaaagc 307 | ||||| || ||||| |||||||| | |||||||||| |||||||||||| ||||||| Sbjct: 3288 cgtcaagtacagtttataaatgtgtcctaaagaattgcaaaccggtggcaataaaaaagc 3229 Query: 308 tgtatgcccagtacccgcaaagcctgaaggaatttcaaactgagcttgagactgtcggca 367 |||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||| || | Sbjct: 3228 tgtatgcccactacccacagagccttaaggaatttgaaactgagcttgagactgttggta 3169 Query: 368 gtatcaaacaccggaatttagtgagccttcaaggatactccctatcacctgttgg 422 | ||||| ||||||||| |||| ||||||||||| ||||| ||||||||||||| Sbjct: 3168 gcatcaagcaccggaatctagtcagccttcaagggtactcattatcacctgttgg 3114 Score = 58.0 bits (29), Expect = 2e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 39 tgggtgggcttgttatccttctgatgattttggtagctgtatgcaggccgcacagccctc 98 ||||||| ||||||||||| ||||||| || |||||||| |||||||| || | || | Sbjct: 3724 tgggtggacttgttatcctcttgatgatcttagtagctgtttgcaggccacatcgtccac 3665 Query: 99 ctgttttcaaagatgtctctgttagcaaaccag 131 ||| ||| ||||||||| |||| ||||| |||| Sbjct: 3664 ctgcttttaaagatgtcactgtaagcaagccag 3632
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 230 bits (116), Expect = 3e-57 Identities = 255/300 (85%), Gaps = 1/300 (0%) Strand = Plus / Minus Query: 129 cagtgagcaatgt-ccccccaagctagtgatacttaatatgaacatggccctccatgtat 187 ||||||||||||| ||||||||||| || || ||| |||||||| | |||| | ||||| Sbjct: 5257195 cagtgagcaatgttccccccaagctggttatccttcatatgaacctttcccttcttgtat 5257136 Query: 188 atgaagacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatgggg 247 | || || ||||||| ||||||||| ||| |||||||||| |||||||||||||| || | Sbjct: 5257135 acgaggatataatgacgatgactgaaaacctgagtgagaagtacatcattgggtacggag 5257076 Query: 248 catcaagcactgtttacaaatgtgttttgaagaattgcagaccggtggcaatcaaaaagc 307 |||| ||||| ||||| |||||||||| |||||| ||| ||| |||||| | ||||||| Sbjct: 5257075 catccagcacggtttataaatgtgtttcgaagaaccgcaaaccagtggcagtaaaaaagc 5257016 Query: 308 tgtatgcccagtacccgcaaagcctgaaggaatttcaaactgagcttgagactgtcggca 367 | |||||||| || || || ||| | ||||||||| ||||||||||||||||||| || | Sbjct: 5257015 tatatgcccactatccacagagcttcaaggaatttgaaactgagcttgagactgttggta 5256956 Query: 368 gtatcaaacaccggaatttagtgagccttcaaggatactccctatcacctgttggaaatc 427 | ||||||||||||||| |||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 5256955 gcatcaaacaccggaatctagtcagtcttcaaggatattccctatctcctgttggaaatc 5256896 Score = 137 bits (69), Expect = 3e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 7 aatctcgaaggctgcaatactcggcattgcgctgggtgggcttgttatccttctgatgat 66 |||||| |||||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 5257493 aatctcaaaggctgcaatacttggaattgccgtgggtgggcttgttatcctcctgatgat 5257434 Query: 67 tttggtagctgtatgcaggccgcacagccctcctgttttcaaagatgtctctgttagcaa 126 || ||||| || |||||||| || || || ||||||||||||||||||||||||||||| Sbjct: 5257433 cttagtagcggtctgcaggcctcatagtccacctgttttcaaagatgtctctgttagcaa 5257374 Query: 127 accag 131 ||||| Sbjct: 5257373 accag 5257369 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 1609729 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 1609788 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 1609789 agcactgtctacaaatgtg 1609807
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 230 bits (116), Expect = 3e-57 Identities = 255/300 (85%), Gaps = 1/300 (0%) Strand = Plus / Minus Query: 129 cagtgagcaatgt-ccccccaagctagtgatacttaatatgaacatggccctccatgtat 187 ||||||||||||| ||||||||||| || || ||| |||||||| | |||| | ||||| Sbjct: 123917 cagtgagcaatgttccccccaagctggttatccttcatatgaacctttcccttcttgtat 123858 Query: 188 atgaagacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatgggg 247 | || || ||||||| ||||||||| ||| |||||||||| |||||||||||||| || | Sbjct: 123857 acgaggatataatgacgatgactgaaaacctgagtgagaagtacatcattgggtacggag 123798 Query: 248 catcaagcactgtttacaaatgtgttttgaagaattgcagaccggtggcaatcaaaaagc 307 |||| ||||| ||||| |||||||||| |||||| ||| ||| |||||| | ||||||| Sbjct: 123797 catccagcacggtttataaatgtgtttcgaagaaccgcaaaccagtggcagtaaaaaagc 123738 Query: 308 tgtatgcccagtacccgcaaagcctgaaggaatttcaaactgagcttgagactgtcggca 367 | |||||||| || || || ||| | ||||||||| ||||||||||||||||||| || | Sbjct: 123737 tatatgcccactatccacagagcttcaaggaatttgaaactgagcttgagactgttggta 123678 Query: 368 gtatcaaacaccggaatttagtgagccttcaaggatactccctatcacctgttggaaatc 427 | ||||||||||||||| |||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 123677 gcatcaaacaccggaatctagtcagtcttcaaggatattccctatctcctgttggaaatc 123618 Score = 137 bits (69), Expect = 3e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 7 aatctcgaaggctgcaatactcggcattgcgctgggtgggcttgttatccttctgatgat 66 |||||| |||||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 124215 aatctcaaaggctgcaatacttggaattgccgtgggtgggcttgttatcctcctgatgat 124156 Query: 67 tttggtagctgtatgcaggccgcacagccctcctgttttcaaagatgtctctgttagcaa 126 || ||||| || |||||||| || || || ||||||||||||||||||||||||||||| Sbjct: 124155 cttagtagcggtctgcaggcctcatagtccacctgttttcaaagatgtctctgttagcaa 124096 Query: 127 accag 131 ||||| Sbjct: 124095 accag 124091
>ref|XM_468076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1688 Score = 202 bits (102), Expect = 7e-49 Identities = 222/262 (84%) Strand = Plus / Plus Query: 166 atgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtgag 225 ||||||||||| ||| ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct: 290 atgaacatggcattccttgtgtacgaagatataatgaggatgactgaaaatttgagcgag 349 Query: 226 aaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaattgc 285 || ||||| || |||||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct: 350 aagtacattatcgggtatggggcatcaagcacagtgtacaaatgtgtactgaagaactgc 409 Query: 286 agaccggtggcaatcaaaaagctgtatgcccagtacccgcaaagcctgaaggaatttcaa 345 | ||||| ||||| ||||| ||||||| || ||||| || |||||||||||||| | Sbjct: 410 aagccggttgcaataaaaaaattgtatgctcactacccacagagcctgaaggaattcgag 469 Query: 346 actgagcttgagactgtcggcagtatcaaacaccggaatttagtgagccttcaaggatac 405 ||||||||||||||||| || |||||||| ||||||||| | || ||||||||||| || Sbjct: 470 actgagcttgagactgttggaagtatcaagcaccggaatcttgtcagccttcaagggtat 529 Query: 406 tccctatcacctgttggaaatc 427 ||||||||||||| ||| |||| Sbjct: 530 tccctatcacctgctgggaatc 551 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 tgggcttgttatccttctgatgat 66 ||||||||||||||| |||||||| Sbjct: 148 tgggcttgttatcctgctgatgat 171
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 202 bits (102), Expect = 7e-49 Identities = 222/262 (84%) Strand = Plus / Plus Query: 166 atgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtgag 225 ||||||||||| ||| ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct: 32906019 atgaacatggcattccttgtgtacgaagatataatgaggatgactgaaaatttgagcgag 32906078 Query: 226 aaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaattgc 285 || ||||| || |||||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct: 32906079 aagtacattatcgggtatggggcatcaagcacagtgtacaaatgtgtactgaagaactgc 32906138 Query: 286 agaccggtggcaatcaaaaagctgtatgcccagtacccgcaaagcctgaaggaatttcaa 345 | ||||| ||||| ||||| ||||||| || ||||| || |||||||||||||| | Sbjct: 32906139 aagccggttgcaataaaaaaattgtatgctcactacccacagagcctgaaggaattcgag 32906198 Query: 346 actgagcttgagactgtcggcagtatcaaacaccggaatttagtgagccttcaaggatac 405 ||||||||||||||||| || |||||||| ||||||||| | || ||||||||||| || Sbjct: 32906199 actgagcttgagactgttggaagtatcaagcaccggaatcttgtcagccttcaagggtat 32906258 Query: 406 tccctatcacctgttggaaatc 427 ||||||||||||| ||| |||| Sbjct: 32906259 tccctatcacctgctgggaatc 32906280 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 tgggcttgttatccttctgatgat 66 ||||||||||||||| |||||||| Sbjct: 32905683 tgggcttgttatcctgctgatgat 32905706
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 202 bits (102), Expect = 7e-49 Identities = 222/262 (84%) Strand = Plus / Plus Query: 166 atgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtgag 225 ||||||||||| ||| ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct: 60760 atgaacatggcattccttgtgtacgaagatataatgaggatgactgaaaatttgagcgag 60819 Query: 226 aaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaattgc 285 || ||||| || |||||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct: 60820 aagtacattatcgggtatggggcatcaagcacagtgtacaaatgtgtactgaagaactgc 60879 Query: 286 agaccggtggcaatcaaaaagctgtatgcccagtacccgcaaagcctgaaggaatttcaa 345 | ||||| ||||| ||||| ||||||| || ||||| || |||||||||||||| | Sbjct: 60880 aagccggttgcaataaaaaaattgtatgctcactacccacagagcctgaaggaattcgag 60939 Query: 346 actgagcttgagactgtcggcagtatcaaacaccggaatttagtgagccttcaaggatac 405 ||||||||||||||||| || |||||||| ||||||||| | || ||||||||||| || Sbjct: 60940 actgagcttgagactgttggaagtatcaagcaccggaatcttgtcagccttcaagggtat 60999 Query: 406 tccctatcacctgttggaaatc 427 ||||||||||||| ||| |||| Sbjct: 61000 tccctatcacctgctgggaatc 61021 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 tgggcttgttatccttctgatgat 66 ||||||||||||||| |||||||| Sbjct: 60424 tgggcttgttatcctgctgatgat 60447
>dbj|AK060260.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-H01, full insert sequence Length = 1688 Score = 202 bits (102), Expect = 7e-49 Identities = 222/262 (84%) Strand = Plus / Plus Query: 166 atgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtgag 225 ||||||||||| ||| ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct: 290 atgaacatggcattccttgtgtacgaagatataatgaggatgactgaaaatttgagcgag 349 Query: 226 aaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaattgc 285 || ||||| || |||||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct: 350 aagtacattatcgggtatggggcatcaagcacagtgtacaaatgtgtactgaagaactgc 409 Query: 286 agaccggtggcaatcaaaaagctgtatgcccagtacccgcaaagcctgaaggaatttcaa 345 | ||||| ||||| ||||| ||||||| || ||||| || |||||||||||||| | Sbjct: 410 aagccggttgcaataaaaaaattgtatgctcactacccacagagcctgaaggaattcgag 469 Query: 346 actgagcttgagactgtcggcagtatcaaacaccggaatttagtgagccttcaaggatac 405 ||||||||||||||||| || |||||||| ||||||||| | || ||||||||||| || Sbjct: 470 actgagcttgagactgttggaagtatcaagcaccggaatcttgtcagccttcaagggtat 529 Query: 406 tccctatcacctgttggaaatc 427 ||||||||||||| ||| |||| Sbjct: 530 tccctatcacctgctgggaatc 551 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 tgggcttgttatccttctgatgat 66 ||||||||||||||| |||||||| Sbjct: 148 tgggcttgttatcctgctgatgat 171
>dbj|AP004503.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034a, complete sequence Length = 83232 Score = 105 bits (53), Expect = 1e-19 Identities = 206/257 (80%) Strand = Plus / Minus Query: 151 ctagtgatacttaatatgaacatggccctccatgtatatgaagacataatgaggatgact 210 |||||||| ||| ||||||| ||||| || ||||| ||||| || || |||||||||||| Sbjct: 74419 ctagtgattcttcatatgaatatggcgcttcatgtgtatgacgatatcatgaggatgact 74360 Query: 211 gagaacttgagtgagaaatacatcattgggtatggggcatcaagcactgtttacaaatgt 270 || || |||||||||| || || ||||| || ||||||||||| || |||||||||||| Sbjct: 74359 gaaaatctgagtgagaagtatataattggatacggggcatcaagtacagtttacaaatgt 74300 Query: 271 gttttgaagaattgcagaccggtggcaatcaaaaagctgtatgcccagtacccgcaaagc 330 ||| | |||||||||| || ||||| ||||| | ||| || | || ||||| ||| || Sbjct: 74299 gttcttaagaattgcaagccagtggccatcaagaggctctactctcactacccacaatgc 74240 Query: 331 ctgaaggaatttcaaactgagcttgagactgtcggcagtatcaaacaccggaatttagtg 390 |||| |||||| | || || |||||||| || || || || |||||||| ||| | || Sbjct: 74239 ttgaaagaatttgagaccgaacttgagacagttggaagcattaaacaccgcaatctggtc 74180 Query: 391 agccttcaaggatactc 407 || |||||||| ||||| Sbjct: 74179 agtcttcaaggctactc 74163
>ref|NM_128190.2| Arabidopsis thaliana ER (ERECTA) AT2G26330 (ER) mRNA, complete cds Length = 3191 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 1965 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 2024 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 2025 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 2084 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 2085 gtaaaccggt 2094
>gb|AY035110.1| Arabidopsis thaliana putative receptor protein kinase, ERECTA (At2g26330) mRNA, complete cds Length = 3192 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 1965 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 2024 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 2025 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 2084 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 2085 gtaaaccggt 2094
>gb|AC004484.3| Arabidopsis thaliana chromosome 2 clone T1D16 map B68, complete sequence Length = 82212 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 10699 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 10758 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 10759 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 10818 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 10819 gtaaaccggt 10828
>dbj|AK221886.1| Arabidopsis thaliana mRNA for putative receptor-like protein kinase, partial cds, clone: RAFL22-23-M12 Length = 1508 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 286 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 345 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 346 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 405 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 406 gtaaaccggt 415
>dbj|D83257.1|ATHER Arabidopsis thaliana DNA for receptor protein kinase, complete cds Length = 9295 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 6129 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 6188 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 6189 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 6248 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 6249 gtaaaccggt 6258
>gb|U47029.1|ATU47029 Arabidopisis thaliana ERECTA mRNA, complete cds Length = 3176 Score = 99.6 bits (50), Expect = 7e-18 Identities = 110/130 (84%) Strand = Plus / Plus Query: 164 atatgaacatggccctccatgtatatgaagacataatgaggatgactgagaacttgagtg 223 ||||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||| Sbjct: 1939 atatgaacatggcactccacgtttacgaggatatcatgagaatgacagagaatctaagtg 1998 Query: 224 agaaatacatcattgggtatggggcatcaagcactgtttacaaatgtgttttgaagaatt 283 |||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct: 1999 agaagtatatcattgggcacggagcatcaagcactgtatacaaatgtgttttgaagaatt 2058 Query: 284 gcagaccggt 293 | | |||||| Sbjct: 2059 gtaaaccggt 2068
>ref|XM_550586.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2943 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 1933 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 1992 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 1993 agcactgtctacaaatgtg 2011
>gb|AY332474.1| Oryza sativa (japonica cultivar-group) transmembrane protein kinase (PK3) mRNA, complete cds Length = 3184 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 2046 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 2105 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 2106 agcactgtctacaaatgtg 2124
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 12891 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 12950 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 12951 agcactgtctacaaatgtg 12969
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0538C01 Length = 155643 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 138453 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 138512 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 138513 agcactgtctacaaatgtg 138531
>dbj|AK064052.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E11, full insert sequence Length = 1881 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 193 gacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatggggcatca 252 ||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct: 413 gacatcatgaggctgacagagaatttgagcgagaaatacatcattggctatggcgcctca 472 Query: 253 agcactgtttacaaatgtg 271 |||||||| |||||||||| Sbjct: 473 agcactgtctacaaatgtg 491
>gb|AC171265.5| Medicago truncatula clone mth2-2j17, complete sequence Length = 117361 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 148 aagctagtgatacttaatatgaacatggccctccatgtatatgaagacataatgaggatg 207 ||||||||||| ||| ||||||||||||| || ||||| || || || || ||||||||| Sbjct: 27433 aagctagtgattcttcatatgaacatggcacttcatgtgtacgacgatatcatgaggatg 27492 Query: 208 actgagaacttgagtgagaa 227 ||||| ||| |||||||||| Sbjct: 27493 actgaaaacctgagtgagaa 27512
>gb|AY182166.1| Elaeis guineensis clone Rlk-OPmf receptor-like protein kinase mRNA, partial cds Length = 2450 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 186 atatgaagacataatgaggatgactgagaacttgagtgagaaatacatcattgggtatgg 245 ||||||||| || |||||||| || || || |||||||||||||| || || || ||||| Sbjct: 1158 atatgaagatattatgaggatcacagaaaatttgagtgagaaatatattataggctatgg 1217 Query: 246 ggcatcaagcactgtttacaaatgtgt 272 || |||||||| || || |||||||| Sbjct: 1218 tgcttcaagcacggtctataaatgtgt 1244
>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207306 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 122 agcaaaccagtgagcaatgtcccccca 148 |||||||||||||||| |||||||||| Sbjct: 44786 agcaaaccagtgagcagtgtcccccca 44760
>ref|NM_120800.3| Arabidopsis thaliana ERL2 (ERECTA-LIKE 2); kinase AT5G07180 (ERL2) mRNA, complete cds Length = 3305 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 222 tgagaaatacatcattgggtatggggcatcaagcactgtttacaa 266 |||||||||||||||||| || || || || ||||| |||||||| Sbjct: 2141 tgagaaatacatcattggatacggtgcttctagcacagtttacaa 2185
>gb|AY244746.1| Arabidopsis thaliana ERECTA-like kinase 2 (ERL2) mRNA, ERL2-erl2 allele, complete cds Length = 3089 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 222 tgagaaatacatcattgggtatggggcatcaagcactgtttacaa 266 |||||||||||||||||| || || || || ||||| |||||||| Sbjct: 2141 tgagaaatacatcattggatacggtgcttctagcacagtttacaa 2185
>gb|AC021028.12| Homo sapiens chromosome 10 clone RP11-137H2, complete sequence Length = 161803 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 atgactgagaacttgagtgag 225 ||||||||||||||||||||| Sbjct: 121996 atgactgagaacttgagtgag 121976
>emb|AL133284.13| Human DNA sequence from clone RP11-67K19 on chromosome 9q33.1-34.11 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634), the TRIM32 gene for tripartite motif-containing 32, and a novel gene, complete sequence Length = 155466 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 cctgaaggaatttcaaactga 350 ||||||||||||||||||||| Sbjct: 75720 cctgaaggaatttcaaactga 75740
>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project) Length = 104607 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 222 tgagaaatacatcattgggtatggggcatcaagcactgtttacaa 266 |||||||||||||||||| || || || || ||||| |||||||| Sbjct: 33156 tgagaaatacatcattggatacggtgcttctagcacagtttacaa 33112
>emb|BX323018.8| Zebrafish DNA sequence from clone DKEYP-77B4 in linkage group 25, complete sequence Length = 136045 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 ccatgtatatgaagacataat 200 ||||||||||||||||||||| Sbjct: 69094 ccatgtatatgaagacataat 69114
>gb|AC012305.7| Homo sapiens BAC clone RP11-84G18 from 2, complete sequence Length = 190385 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 gcacagccctcctgttttcaa 108 ||||||||||||||||||||| Sbjct: 154190 gcacagccctcctgttttcaa 154170
>ref|NM_119033.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT4G28890 mRNA, complete cds Length = 1388 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 1238 tctctgttagcaaaccattgagca 1215
>ref|NM_194931.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0004E08.12), mRNA Length = 3468 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 actgagaacttgagtgagaaatacatcattgg 239 ||||| |||| ||||||||||||| ||||||| Sbjct: 2593 actgataactggagtgagaaatacgtcattgg 2624
>gb|BT020178.1| Arabidopsis thaliana At4g28890 mRNA, complete cds Length = 1161 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 1115 tctctgttagcaaaccattgagca 1092
>gb|BT015731.1| Arabidopsis thaliana At4g28890 mRNA, complete cds Length = 1321 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 1207 tctctgttagcaaaccattgagca 1184
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 actgagaacttgagtgagaaatacatcattgg 239 ||||| |||| ||||||||||||| ||||||| Sbjct: 73295 actgataactggagtgagaaatacgtcattgg 73326
>gb|U88171.1| Caenorhabditis elegans cosmid F25F8, complete sequence Length = 28466 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 actgtttacaaatgtgttttgaag 279 ||||||| |||||||||||||||| Sbjct: 3864 actgtttccaaatgtgttttgaag 3887
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 aagatgtctctgttagcaaa 127 |||||||||||||||||||| Sbjct: 28703 aagatgtctctgttagcaaa 28722
>gb|AC113311.9| Mus musculus chromosome 1, clone RP23-440J24, complete sequence Length = 260120 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ctgagaacttgagtgagaaa 228 |||||||||||||||||||| Sbjct: 239104 ctgagaacttgagtgagaaa 239123
>gb|AC122059.1| Mus musculus BAC clone RP24-468J3 from 1, complete sequence Length = 162681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ctgagaacttgagtgagaaa 228 |||||||||||||||||||| Sbjct: 125485 ctgagaacttgagtgagaaa 125466
>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence Length = 171537 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gttttcaaagatgtctctgt 120 |||||||||||||||||||| Sbjct: 28799 gttttcaaagatgtctctgt 28780
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 177218 tctctgttagcaaaccattgagca 177241
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 9594 tctctgttagcaaaccattgagca 9617
>emb|AL031746.9|PFMAL1P3 Plasmodium falciparum DNA from MAL1P3 Length = 67970 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 tttacaaatgtgttttgaagaatt 283 ||||||||| |||||||||||||| Sbjct: 47941 tttacaaatatgttttgaagaatt 47964
>emb|BX539326.7| Zebrafish DNA sequence from clone DKEY-64H4 in linkage group 17, complete sequence Length = 143577 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 acaaatgtgttttgaagaat 282 |||||||||||||||||||| Sbjct: 136616 acaaatgtgttttgaagaat 136597
>gb|AC183604.3| Pan troglodytes BAC clone CH251-346L15 from chromosome 1, complete sequence Length = 143809 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gttttcaaagatgtctctgt 120 |||||||||||||||||||| Sbjct: 143049 gttttcaaagatgtctctgt 143030
>gb|AC183284.3| Pan troglodytes BAC clone CH251-413D13 from chromosome 7, complete sequence Length = 171441 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gttttcaaagatgtctctgt 120 |||||||||||||||||||| Sbjct: 13262 gttttcaaagatgtctctgt 13281
>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence Length = 184007 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 gttttcaaagatgtctctgt 120 |||||||||||||||||||| Sbjct: 30038 gttttcaaagatgtctctgt 30019
>gb|DQ059125.1| Arabidopsis thaliana RING finger family protein (At4g28890) mRNA, complete cds Length = 1299 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 1253 tctctgttagcaaaccattgagca 1230
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 actgagaacttgagtgagaaatacatcattgg 239 ||||| |||| ||||||||||||| ||||||| Sbjct: 3482166 actgataactggagtgagaaatacgtcattgg 3482197
>emb|BX828195.1|CNS0A3T9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH62ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1379 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 tctctgttagcaaaccagtgagca 137 ||||||||||||||||| |||||| Sbjct: 1237 tctctgttagcaaaccattgagca 1214
>emb|BX294384.19| Mouse DNA sequence from clone RP24-230A23 on chromosome X, complete sequence Length = 133152 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gtttacaaatgtgttttgaa 278 |||||||||||||||||||| Sbjct: 95715 gtttacaaatgtgttttgaa 95696
>gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q11.23-q21.1, complete sequence Length = 128959 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gttttcaaagatgtctctgt 120 |||||||||||||||||||| Sbjct: 105103 gttttcaaagatgtctctgt 105122
>gb|AC157656.3| Mus musculus BAC clone RP23-406A5 from chromosome 13, complete sequence Length = 189500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tgagaaatacatcattgggt 241 |||||||||||||||||||| Sbjct: 27643 tgagaaatacatcattgggt 27624
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 actgagaacttgagtgagaaatacatcattgg 239 ||||| |||| ||||||||||||| ||||||| Sbjct: 3482087 actgataactggagtgagaaatacgtcattgg 3482118
>emb|CT030663.7| Mouse DNA sequence from clone RP23-233E5 on chromosome 12, complete sequence Length = 121803 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 acatggccctccatgtatat 189 |||||||||||||||||||| Sbjct: 88601 acatggccctccatgtatat 88620
>gb|AC154684.2| Mus musculus BAC clone RP23-143E1 from 12, complete sequence Length = 219213 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 acatggccctccatgtatat 189 |||||||||||||||||||| Sbjct: 214549 acatggccctccatgtatat 214568
>gb|AC150285.2| Mus musculus BAC clone RP23-340J3 from 7, complete sequence Length = 182333 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 acatggccctccatgtatat 189 |||||||||||||||||||| Sbjct: 153262 acatggccctccatgtatat 153281 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,750,962 Number of Sequences: 3902068 Number of extensions: 3750962 Number of successful extensions: 74007 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73846 Number of HSP's gapped (non-prelim): 155 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)