ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast46a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467724.1| Oryza sativa (japonica cultivar-group), mRNA 357 2e-95
2dbj|AK068461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
4dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
5dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
6gb|AY110484.1| Zea mays CL5021_1 mRNA sequence 165 1e-37
7ref|XM_779534.1| PREDICTED: Strongylocentrotus purpuratus simila... 52 0.001
8gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 46 0.081
9dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
10gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.32
11ref|XM_793604.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.32
12gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 44 0.32
13gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 44 0.32
14gb|CP000133.1| Rhizobium etli CFN 42, complete genome 44 0.32
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
16gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.32
17gb|AE005076.1| Halobacterium sp. NRC-1 section 107 of 170 of the... 44 0.32
18dbj|AK108862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
19gb|BT017555.1| Zea mays clone EL01N0424H02.c mRNA sequence 42 1.3
20emb|BX321865.1| Nitrosomonas europaea ATCC 19718, complete genom... 42 1.3
21emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
22gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.3
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
25gb|AY105214.1| Zea mays PCO090639 mRNA sequence 42 1.3
26gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.3
27emb|AL606729.3|OSJN00107 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
28ref|NM_194860.1| Oryza sativa (japonica cultivar-group) putative... 40 5.0
29emb|AJ874500.1| Oryctolagus cuniculus microsatellite DNA, locus ... 40 5.0
30emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4,... 40 5.0
31gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
32gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.0
33gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
34gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.0
35emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.0
36emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.0
37emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
38emb|AJ491307.1|RRU491307 Rhodococcus ruber padh gene (partial), ... 40 5.0
39gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
40dbj|AB205130.1| Ketogulonicigenium vulgare sndH, deaD genes for ... 40 5.0
41gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.0
42gb|AF285783.1| Myxococcus xanthus hsfBA operon, complete sequenc... 40 5.0
43gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, c... 40 5.0
44gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.0
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
46dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
47dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
48dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.0
49dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.0
50dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
51dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
52dbj|AK063305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
53gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0 
>ref|XM_467724.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score =  357 bits (180), Expect = 2e-95
 Identities = 261/288 (90%)
 Strand = Plus / Plus

                                                                       
Query: 88  cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
           |||||||| ||||||||  |||||||||||||||||| |||| ||| ||||||||| |||
Sbjct: 65  cggcggcgacatggagggtggcggcgaggagttcgcgatcggggtgctgatctccgtgaa 124

                                                                       
Query: 148 gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 125 gaccaccctcggcgaggagttcgaaggccagatcgtctccttcgaccgcccgaccaacct 184

                                                                       
Query: 208 cctcgtcatccaggagggcgtgggcagggcggagaggggcgagcggcggaacgtgagggt 267
           ||||||||| ||||| |||||||| ||||| ||||| || |||||| |||||||| ||||
Sbjct: 185 cctcgtcattcaggaaggcgtggggagggcagagagaggtgagcggaggaacgtgcgggt 244

                                                                       
Query: 268 gctcaaggccaactacatccaggagttctccgtcgtcggcaagtacgacgacccgctcga 327
           ||||||||| |||||||||| |||||||||||| || ||||||  |||||||||||||||
Sbjct: 245 gctcaaggcgaactacatccgggagttctccgttgtaggcaaggccgacgacccgctcga 304

                                                           
Query: 328 cccggctggctgtgtgctcgacctcgccgccatccacgccagggagga 375
           |||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 305 cccggccggctgcgtgctcgacctcgccgccatccacgcccgggagga 352
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>dbj|AK068461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153P08, full
           insert sequence
          Length = 909

 Score =  357 bits (180), Expect = 2e-95
 Identities = 261/288 (90%)
 Strand = Plus / Plus

                                                                       
Query: 88  cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
           |||||||| ||||||||  |||||||||||||||||| |||| ||| ||||||||| |||
Sbjct: 65  cggcggcgacatggagggtggcggcgaggagttcgcgatcggggtgctgatctccgtgaa 124

                                                                       
Query: 148 gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 125 gaccaccctcggcgaggagttcgaaggccagatcgtctccttcgaccgcccgaccaacct 184

                                                                       
Query: 208 cctcgtcatccaggagggcgtgggcagggcggagaggggcgagcggcggaacgtgagggt 267
           ||||||||| ||||| |||||||| ||||| ||||| || |||||| |||||||| ||||
Sbjct: 185 cctcgtcattcaggaaggcgtggggagggcagagagaggtgagcggaggaacgtgcgggt 244

                                                                       
Query: 268 gctcaaggccaactacatccaggagttctccgtcgtcggcaagtacgacgacccgctcga 327
           ||||||||| |||||||||| |||||||||||| || ||||||  |||||||||||||||
Sbjct: 245 gctcaaggcgaactacatccgggagttctccgttgtaggcaaggccgacgacccgctcga 304

                                                           
Query: 328 cccggctggctgtgtgctcgacctcgccgccatccacgccagggagga 375
           |||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 305 cccggccggctgcgtgctcgacctcgccgccatccacgcccgggagga 352
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  186 bits (94), Expect = 3e-44
 Identities = 142/158 (89%)
 Strand = Plus / Minus

                                                                            
Query: 218      caggagggcgtgggcagggcggagaggggcgagcggcggaacgtgagggtgctcaaggcc 277
                ||||| |||||||| ||||| ||||| || |||||| |||||||| ||||||||||||| 
Sbjct: 31077397 caggaaggcgtggggagggcagagagaggtgagcggaggaacgtgcgggtgctcaaggcg 31077338

                                                                            
Query: 278      aactacatccaggagttctccgtcgtcggcaagtacgacgacccgctcgacccggctggc 337
                |||||||||| |||||||||||| || ||||||  ||||||||||||||||||||| |||
Sbjct: 31077337 aactacatccgggagttctccgttgtaggcaaggccgacgacccgctcgacccggccggc 31077278

                                                      
Query: 338      tgtgtgctcgacctcgccgccatccacgccagggagga 375
                || ||||||||||||||||||||||||||| |||||||
Sbjct: 31077277 tgcgtgctcgacctcgccgccatccacgcccgggagga 31077240



 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                            
Query: 88       cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
                |||||||| ||||||||  |||||||||||||||||| |||| ||| ||||||||| |||
Sbjct: 31077659 cggcggcgacatggagggtggcggcgaggagttcgcgatcggggtgctgatctccgtgaa 31077600

                                                                            
Query: 148      gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
                |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 31077599 gaccaccctcggcgaggagttcgaaggccagatcgtctccttcgaccgcccgaccaacct 31077540

                         
Query: 208      cctcgtcat 216
                |||||||||
Sbjct: 31077539 cctcgtcat 31077531



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 73      cccacccaccgccgccggcggcg 95
               |||||||||||||||||||||||
Sbjct: 4416076 cccacccaccgccgccggcggcg 4416054
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>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0516G10
          Length = 148937

 Score =  186 bits (94), Expect = 3e-44
 Identities = 142/158 (89%)
 Strand = Plus / Minus

                                                                          
Query: 218    caggagggcgtgggcagggcggagaggggcgagcggcggaacgtgagggtgctcaaggcc 277
              ||||| |||||||| ||||| ||||| || |||||| |||||||| ||||||||||||| 
Sbjct: 132353 caggaaggcgtggggagggcagagagaggtgagcggaggaacgtgcgggtgctcaaggcg 132294

                                                                          
Query: 278    aactacatccaggagttctccgtcgtcggcaagtacgacgacccgctcgacccggctggc 337
              |||||||||| |||||||||||| || ||||||  ||||||||||||||||||||| |||
Sbjct: 132293 aactacatccgggagttctccgttgtaggcaaggccgacgacccgctcgacccggccggc 132234

                                                    
Query: 338    tgtgtgctcgacctcgccgccatccacgccagggagga 375
              || ||||||||||||||||||||||||||| |||||||
Sbjct: 132233 tgcgtgctcgacctcgccgccatccacgcccgggagga 132196



 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                          
Query: 88     cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
              |||||||| ||||||||  |||||||||||||||||| |||| ||| ||||||||| |||
Sbjct: 132615 cggcggcgacatggagggtggcggcgaggagttcgcgatcggggtgctgatctccgtgaa 132556

                                                                          
Query: 148    gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
              |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 132555 gaccaccctcggcgaggagttcgaaggccagatcgtctccttcgaccgcccgaccaacct 132496

                       
Query: 208    cctcgtcat 216
              |||||||||
Sbjct: 132495 cctcgtcat 132487
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>dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585G03
          Length = 173649

 Score =  186 bits (94), Expect = 3e-44
 Identities = 142/158 (89%)
 Strand = Plus / Minus

                                                                         
Query: 218   caggagggcgtgggcagggcggagaggggcgagcggcggaacgtgagggtgctcaaggcc 277
             ||||| |||||||| ||||| ||||| || |||||| |||||||| ||||||||||||| 
Sbjct: 66621 caggaaggcgtggggagggcagagagaggtgagcggaggaacgtgcgggtgctcaaggcg 66562

                                                                         
Query: 278   aactacatccaggagttctccgtcgtcggcaagtacgacgacccgctcgacccggctggc 337
             |||||||||| |||||||||||| || ||||||  ||||||||||||||||||||| |||
Sbjct: 66561 aactacatccgggagttctccgttgtaggcaaggccgacgacccgctcgacccggccggc 66502

                                                   
Query: 338   tgtgtgctcgacctcgccgccatccacgccagggagga 375
             || ||||||||||||||||||||||||||| |||||||
Sbjct: 66501 tgcgtgctcgacctcgccgccatccacgcccgggagga 66464



 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                         
Query: 88    cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
             |||||||| ||||||||  |||||||||||||||||| |||| ||| ||||||||| |||
Sbjct: 66883 cggcggcgacatggagggtggcggcgaggagttcgcgatcggggtgctgatctccgtgaa 66824

                                                                         
Query: 148   gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
             |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 66823 gaccaccctcggcgaggagttcgaaggccagatcgtctccttcgaccgcccgaccaacct 66764

                      
Query: 208   cctcgtcat 216
             |||||||||
Sbjct: 66763 cctcgtcat 66755
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>gb|AY110484.1| Zea mays CL5021_1 mRNA sequence
          Length = 743

 Score =  165 bits (83), Expect = 1e-37
 Identities = 123/138 (89%)
 Strand = Plus / Plus

                                                                       
Query: 88  cggcggcgccatggaggtcggcggcgaggagttcgcggtcggcgtggtgatctccgcgaa 147
           |||||||| ||||||||  || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 43  cggcggcggcatggaggctggtggcgaggagttcgcgatcggcgtggtgatctccgcgaa 102

                                                                       
Query: 148 gaccaccctcggggaggagttcgagggccagatcgtctccttcgaccgcccgagcaacct 207
           |||||||||     ||||||||||||||||||||||| |||||||||||||   ||||||
Sbjct: 103 gaccaccctnnnnnaggagttcgagggccagatcgtcgccttcgaccgcccctccaacct 162

                             
Query: 208 cctcgtcatccaggaggg 225
           |||||| |||||||||||
Sbjct: 163 cctcgttatccaggaggg 180



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 262 gagggtgctcaaggccaactacatccaggagttctccgt 300
           |||||| ||||| || |||||||||| ||||||||||||
Sbjct: 217 gagggtcctcaaagcgaactacatccgggagttctccgt 255
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>ref|XM_779534.1| PREDICTED: Strongylocentrotus purpuratus similar to calcium response
            factor (LOC579416), mRNA
          Length = 2493

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 269  ctcaaggccaactacatccaggagttctccgtcg 302
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 1279 ctcaaggtcaactacttccaggagttctccgtcg 1312
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 222   agggcgtgggcagggcggagaggggcg 248
             ||||||||||||||||| |||||||||
Sbjct: 77284 agggcgtgggcagggcgaagaggggcg 77258
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>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544B02
          Length = 156339

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 73    cccacccaccgccgccggcggcg 95
             |||||||||||||||||||||||
Sbjct: 99640 cccacccaccgccgccggcggcg 99618
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>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 88    cggcggcgccatggaggtcggcggcg 113
             |||||||||||||||| |||||||||
Sbjct: 59898 cggcggcgccatggagctcggcggcg 59873
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>ref|XM_793604.1| PREDICTED: Strongylocentrotus purpuratus similar to calcium response
            factor (LOC594155), partial mRNA
          Length = 2547

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 269  ctcaaggccaactacatccaggagttctcc 298
            ||||||| ||||||| ||||||||||||||
Sbjct: 1486 ctcaaggtcaactacttccaggagttctcc 1515
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 317     gacccgctcgacccggctggct 338
               ||||||||||||||||||||||
Sbjct: 1780576 gacccgctcgacccggctggct 1780555
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 317    gacccgctcgacccggctggct 338
              ||||||||||||||||||||||
Sbjct: 334082 gacccgctcgacccggctggct 334061
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 105     tcggcggcgaggagttcgcggt 126
               ||||||||||||||||||||||
Sbjct: 2450336 tcggcggcgaggagttcgcggt 2450315
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 88       cggcggcgccatggaggtcggcggcg 113
                |||||||||||||||| |||||||||
Sbjct: 17683140 cggcggcgccatggagctcggcggcg 17683115



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 76       acccaccgccgccggcggcg 95
                ||||||||||||||||||||
Sbjct: 27065328 acccaccgccgccggcggcg 27065309
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 106     cggcggcgaggagttcgcggtc 127
               ||||||||||||||||||||||
Sbjct: 3994098 cggcggcgaggagttcgcggtc 3994077



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 106     cggcggcgaggagttcgcggt 126
               |||||||||||||||||||||
Sbjct: 3056856 cggcggcgaggagttcgcggt 3056876



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 105     tcggcggcgaggagttcgcggtcg 128
               |||||||||||||| |||||||||
Sbjct: 3887749 tcggcggcgaggaggtcgcggtcg 3887726
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>gb|AE005076.1| Halobacterium sp. NRC-1 section 107 of 170 of the complete genome
          Length = 12928

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 115  ggagttcgcggtcggcgtggtg 136
            ||||||||||||||||||||||
Sbjct: 5378 ggagttcgcggtcggcgtggtg 5399
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>dbj|AK108862.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B10, full
           insert sequence
          Length = 1079

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  cggcggcgccatggaggtcggcggcg 113
           |||||||||||||||| |||||||||
Sbjct: 37  cggcggcgccatggagctcggcggcg 62
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>gb|BT017555.1| Zea mays clone EL01N0424H02.c mRNA sequence
          Length = 827

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 91  cggcgccatggaggtcggcggcgag 115
           ||||||| |||||||||||||||||
Sbjct: 272 cggcgccgtggaggtcggcggcgag 248
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>emb|BX321865.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 10/10
          Length = 66094

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 171   agggccagatcgtctccttcgaccg 195
             |||||||||||||| ||||||||||
Sbjct: 18249 agggccagatcgtcaccttcgaccg 18273
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>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20,
              complete sequence
          Length = 145825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     cctcactccggccacctcctc 73
              |||||||||||||||||||||
Sbjct: 140758 cctcactccggccacctcctc 140738



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     cctcactccggccacctcctc 73
              |||||||||||||||||||||
Sbjct: 140594 cctcactccggccacctcctc 140574
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 105     tcggcggcgaggagttcgcgg 125
               |||||||||||||||||||||
Sbjct: 2982935 tcggcggcgaggagttcgcgg 2982915
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       cctcactccggccacctcctc 73
                |||||||||||||||||||||
Sbjct: 16180008 cctcactccggccacctcctc 16179988



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       cctcactccggccacctcctc 73
                |||||||||||||||||||||
Sbjct: 16179844 cctcactccggccacctcctc 16179824



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       cctcccacccaccgccgccg 89
                ||||||||||||||||||||
Sbjct: 19377114 cctcccacccaccgccgccg 19377095
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 77      cccaccgccgccggcggcgcc 97
               |||||||||||||||||||||
Sbjct: 7853772 cccaccgccgccggcggcgcc 7853752
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>gb|AY105214.1| Zea mays PCO090639 mRNA sequence
          Length = 919

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 91  cggcgccatggaggtcggcggcgag 115
           ||||||| |||||||||||||||||
Sbjct: 298 cggcgccgtggaggtcggcggcgag 274
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 106     cggcggcgaggagttcgcggt 126
               |||||||||||||||||||||
Sbjct: 4035520 cggcggcgaggagttcgcggt 4035500



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caccgccgccggcggcgcca 98
              ||||||||||||||||||||
Sbjct: 597531 caccgccgccggcggcgcca 597550
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>emb|AL606729.3|OSJN00107 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06,
             complete sequence
          Length = 187154

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    cctcactccggccacctcctc 73
             |||||||||||||||||||||
Sbjct: 24925 cctcactccggccacctcctc 24905



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    cctcactccggccacctcctc 73
             |||||||||||||||||||||
Sbjct: 24761 cctcactccggccacctcctc 24741
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>ref|NM_194860.1| Oryza sativa (japonica cultivar-group) putative proline-rich
           protein (OSJNBa0031A07.8), mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 86  gccggcggcgccatggaggtcggcggcg 113
           |||||||||||| ||||||||| |||||
Sbjct: 300 gccggcggcgccgtggaggtcgtcggcg 273
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>emb|AJ874500.1| Oryctolagus cuniculus microsatellite DNA, locus OCU-INRACCDDV0160,
           clone LBAB-159G02
          Length = 494

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  ctccggccacctcctcccac 77
           ||||||||||||||||||||
Sbjct: 436 ctccggccacctcctcccac 417
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>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end
          Length = 225394

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     tccggccacctcctcccacccacc 82
              |||| |||||||||||||||||||
Sbjct: 172105 tccgcccacctcctcccacccacc 172082
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>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0007P22, complete sequence
          Length = 148068

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 34/38 (89%), Gaps = 3/38 (7%)
 Strand = Plus / Plus

                                                   
Query: 78    ccaccgccgccggcggcgccatggaggtcggcggcgag 115
             ||||||||||||||||||   | |||||||||||||||
Sbjct: 80488 ccaccgccgccggcggcg---tagaggtcggcggcgag 80522
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     tcggcggcgaggagttcgcg 124
               ||||||||||||||||||||
Sbjct: 3350641 tcggcggcgaggagttcgcg 3350622
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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    acccaccgccgccggcggcg 95
             ||||||||||||||||||||
Sbjct: 71910 acccaccgccgccggcggcg 71891
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 166     gttcgagggccagatcgtctccttcgac 193
               ||||||||||||||||||  ||||||||
Sbjct: 3326152 gttcgagggccagatcgtggccttcgac 3326125
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>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16
          Length = 349746

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    tcggcggcgaggagttcgcg 124
              ||||||||||||||||||||
Sbjct: 329804 tcggcggcgaggagttcgcg 329785
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>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ggcggcgaggagttcgcggt 126
              ||||||||||||||||||||
Sbjct: 240529 ggcggcgaggagttcgcggt 240510
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>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    cctcccacccaccgccgccg 89
             ||||||||||||||||||||
Sbjct: 28367 cctcccacccaccgccgccg 28348
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>emb|AJ491307.1|RRU491307 Rhodococcus ruber padh gene (partial), sadh gene and sudh gene
          Length = 2537

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 250  gcggcggaacgtgagggtgc 269
            ||||||||||||||||||||
Sbjct: 1939 gcggcggaacgtgagggtgc 1958
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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    acccaccgccgccggcggcg 95
             ||||||||||||||||||||
Sbjct: 96412 acccaccgccgccggcggcg 96393
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>dbj|AB205130.1| Ketogulonicigenium vulgare sndH, deaD genes for L-sorbosone
            dehydrogenase, ATP-dependent RNA helicase-like protein,
            complete cds
          Length = 3408

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcaacctcctcgtcatccag 220
            ||||||||||||||||||||
Sbjct: 2005 gcaacctcctcgtcatccag 1986
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     ggcggcgaggagttcgcggt 126
               ||||||||||||||||||||
Sbjct: 3715698 ggcggcgaggagttcgcggt 3715717
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>gb|AF285783.1| Myxococcus xanthus hsfBA operon, complete sequence; branching
           enzyme GlgB gene, partial cds; and unknown genes
          Length = 8785

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 ggcggcgaggagttcgcggt 126
           ||||||||||||||||||||
Sbjct: 250 ggcggcgaggagttcgcggt 269
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>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence
          Length = 134553

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 86    gccggcggcgccatggaggtcggcggcg 113
             |||||||||||| ||||||||| |||||
Sbjct: 49607 gccggcggcgccgtggaggtcgtcggcg 49634
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 342     tgctcgacctcgccgccatc 361
               ||||||||||||||||||||
Sbjct: 2597127 tgctcgacctcgccgccatc 2597108
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 34/38 (89%), Gaps = 3/38 (7%)
 Strand = Plus / Minus

                                                      
Query: 78       ccaccgccgccggcggcgccatggaggtcggcggcgag 115
                ||||||||||||||||||   | |||||||||||||||
Sbjct: 22372328 ccaccgccgccggcggcg---tagaggtcggcggcgag 22372294
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 86      gccggcggcgccatggaggtcggcggcg 113
               |||||||||||| ||||||||| |||||
Sbjct: 2961185 gccggcggcgccgtggaggtcgtcggcg 2961212
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 76       acccaccgccgccggcggcg 95
                ||||||||||||||||||||
Sbjct: 24119250 acccaccgccgccggcggcg 24119231
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 273     aggccaactacatccaggagttct 296
               ||||| ||||||||||||||||||
Sbjct: 4068764 aggccgactacatccaggagttct 4068741
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      ccaccgccgccggcggcgcc 97
               ||||||||||||||||||||
Sbjct: 1692176 ccaccgccgccggcggcgcc 1692157
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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    acccaccgccgccggcggcg 95
             ||||||||||||||||||||
Sbjct: 52708 acccaccgccgccggcggcg 52689
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     acccaccgccgccggcggcg 95
              ||||||||||||||||||||
Sbjct: 128943 acccaccgccgccggcggcg 128924
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>dbj|AK063305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F09, full
           insert sequence
          Length = 2022

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  cctcccacccaccgccgccg 89
           ||||||||||||||||||||
Sbjct: 404 cctcccacccaccgccgccg 385
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 86      gccggcggcgccatggaggtcggcggcg 113
               |||||||||||| ||||||||| |||||
Sbjct: 2961106 gccggcggcgccgtggaggtcgtcggcg 2961133
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 34/38 (89%), Gaps = 3/38 (7%)
 Strand = Plus / Minus

                                                      
Query: 78       ccaccgccgccggcggcgccatggaggtcggcggcgag 115
                ||||||||||||||||||   | |||||||||||||||
Sbjct: 22682239 ccaccgccgccggcggcg---tagaggtcggcggcgag 22682205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,757,860
Number of Sequences: 3902068
Number of extensions: 2757860
Number of successful extensions: 71759
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69043
Number of HSP's gapped (non-prelim): 2711
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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